rfc3 (rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679)



Basic Information


Item Value
gene id rfc3
gene name rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13319875 ~ 13323889 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043250735.1
AGGTGttactgccatctagtggtatACTTTTATATCATCTGCATGATTCAGACTTGGCCATGAAGATTTAACAGCTTGAATgaaatacagtacatatactACACATTTGTAGCAtactattttacataaaataaacactaaatgaAGTATTGTATAATAGTAGAAGTCGTGACAGGTCTTAAATTTAGTctactattattaaaattagagttagtagtttctttttttttttttgtaatcaattaaaacatacattttcaacattttcccAGGCATCATTGAACCATGTGTTCCTCTCGAGCTGTATGCATCCAAACAAACATATACAAGGTTTTACAAATACACAGTGTAAACCACAATTACCTTCACCTGTGttagaattatatatacatatatataattttttttttttggttttgggaatTGTAATAATTTCAACAATTCAACGTGTGTTGGCAAGACCGCAGAGCTTAGGCCTATTGCTAAAATTCCTTAACTACAATGCAAGAATACTTCTGTTATTTGAAAAGCATTCCTTAGATACCATAGGTATAAGAATGCAGGTATCTTATCAGCTAACACTTCACTAATCTGTCTTACTCATTCTCATCTTATCTCATACATCTCATACTATTTAATAGAGGTTCTGCAgtaaacaaaaatctaataaaataaagtaaaagctAAAACTAACAAACGTGCATATTGTATTATGTTTTCCCTGTACAGTAGCCTATGTGTAGCCTTGTGTgctttaatttcacaaaatatctCATATGTACAGACAAAAATGTAATGGAGATACAGTTCATTTTGAGATAAACATCAGTGCAGGGACAGTGGGAGTACAGCTTGGAAAGACATCTACAAAATATTCAGTATTGTCAAGGAACCtctgtcaataataataataacaaattaataaaatgtaaaaaaatcttgcaTACCTAGGCAACAGACTTATAGGCAAAATGAAACGCTAACACTTCTTACGGAGGGGCctgttttatatcatattttgtatttgataaattgaaattaaaaaatgaaagaaatgggTCTGGAACAACGTGAACAAATCTAACGGCCTACATAAACTAAACTGCTCGTATACTGGCCATAGATTATAACGCgttgttaattttttaatgttaatattgttaaGCTTTGAATGTTAATTCAACCTGTCTAAAAGCCTTTTTCTATTGTGGTTTTATATCTTGTAGTGTCTCATAATTTGTCTATAAGCATCATTTGAACACAATAAAGCTatgaattatgtaaaaaaaataataattctaatcaAATGCGTTTATATAATTCCTAAACAACGTATTAGTGCAATGTGTTGAGTTTATCAAACGCGAAAGCCCTTGTCCCTCGTCGTTCCCCGTAGCTGCAGCTCTGACAGCGCACTGCGCGGGTTTACTCTTCGCGGGAGCAGGCGGCTCACAataacattgcatttattttacagaggCGCGATATTCTTATCATTCATCGGAGAAAATGAGTTTATGGGTTGATAAGTACAGGCCATCGTCTTTGGCTAAACTTGACTACCACAAGGAGCAAGCAAACCAGCTCAAAAATCTGGTGCAGTGTGGTGATTTTCCTCACTTGTTGGTTTATGGACCGTCTGGTGCTGGTAAGAAAACCCGGATCATGTGTTTGCTCAGAGAGCTGTACGGTCCCGGGGTCGAGAAACTGAGGATTGAACACCAGTCCATCACgACTCCATCTAAAAAGAAGCTTGAAATCAACACAATTGCCAGCAACTACCATCTAGAGGTGAATCCAAGTGATGCTGGGAACAGTGACCGTGTGGTCATTCAGGAGCTGATCAAAACTGTTGCCCAGTCTCAGCAGATTCAGTCCAGTGCTCAAAGGGAGTTCAAAGTCGTGCTGCTGACAGAGGTGGACCGTCTCACTAAAGACGCCCAGCATGCCTTGCGCCGTACGATGGAGAAGTACATGTCCACTTGTCGACTGATTTTGTGCTGTAACTCCACCTCAAAAGTGATCGCCCCTATCAGGAGCAGGTGTCTGGCTGTGAGGGTCCCCCTGCCAAGTGTGGAAGAGGTGTGCAGTGTTCTGTCAGGCGTGTGCAGGAAGGAGGGTCTGCTGCTTCCTCCTGAACTGGCCAAACAGGTCGCTGAAAAATCTGGCCGTAACCTCCGGAAAGCCCTGCTGATGTGTGAGGCCTGCAGAGTTCAACAATATCCATTCTCTCCAGACCAGGACATCCCTGAGACAGACTGGGAGGTTTACCTCAGAGAGACTGCTAACGCTATAGTCAGCCAGCAGAGCCCTCAAAGactTTTGGAGGTTCGGGCACGATTGTATGAACTTCTGACTCACTGCATCCCAGCAGAAGTCATCATGAAGGGCCTGGTGACAGAGTTGCTAAGTAACTGTGATGGACACCTTAAGGCTGATGTGGCTCAGATGGCAGCATACTACGAGCACAGACTGCAGCTTGGCAGCAAAGCAGTCTACCACCTGGAGGCCTTTGTAGCTAAATTTATGGCCATCTACAAGAAGTTTATGGAAGATGGACTTGACAACTTTATGTTCTGAGCTACTGTTACCTAAAAGAATAagatatattaattaaatgtttctttttcataataaaagcaaTTCCATCAAATGTC

Function


symbol description
rfc3 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin musculature. Orthologous to human RFC3 (replication factor C subunit 3).

NR:

description
PREDICTED: replication factor C subunit 3 isoform X1

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10756 RFC3_5; replication factor C subunit 3/5

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043250735.1 True 2657 mRNA 0.39 9 13319875 13323889
Loading

Neighbor


gene id symbol gene type direction distance location
zar1l zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757 coding downstream 8800 13309532 ~ 13311075 (-)
hunk hunk,LOC107686151,LOC107728887,LOC107734458,LOC107577711,LOC107691675,LOC107588971 coding downstream 133684 13178586 ~ 13186191 (-)
eva1c LOC107686146,LOC107588947,LOC107728854,LOC107734450,LOC107691670,LOC107577635 coding downstream 150660 13164709 ~ 13169215 (-)
si:dkey-18a10.3 LOC107588952,LOC107686147,LOC107735317 coding downstream 158356 13156144 ~ 13161519 (-)
il2rga LOC107728855,LOC107686149,LOC107589463 coding downstream 163787 13151955 ~ 13156088 (-)
ccdc169 LOC107686219,LOC107728839,LOC107589822 coding upstream 209862 13533751 ~ 13537968 (-)
ccna1 ccna1,LOC107728895,LOC107686159 coding upstream 220155 13544044 ~ 13546323 (-)
smad9 smad9,LOC107728873 coding upstream 234589 13558478 ~ 13565616 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding upstream 242655 13566544 ~ 13571292 (-)
supt20 supt20h,supt20,LOC107728858,LOC107589048,LOC107697409 coding upstream 250542 13574431 ~ 13588126 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding downstream 4301 13313194 ~ 13315574 (-)
G77208 NA non-coding downstream 108929 13210616 ~ 13210946 (-)
G77153 NA non-coding downstream 216816 13021653 ~ 13103059 (-)
G77157 NA non-coding downstream 284290 13033741 ~ 13035585 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding downstream 439140 12796664 ~ 12880735 (-)
G77245 NA non-coding upstream 4753 13328642 ~ 13328893 (-)
G77284 NA non-coding upstream 162378 13486267 ~ 13488833 (-)
LOC122352841 NA non-coding upstream 224365 13548254 ~ 13556657 (-)
G77294 NA non-coding upstream 231667 13555556 ~ 13556192 (-)
G77315 NA non-coding upstream 346083 13669972 ~ 13670446 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 530780 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 550458 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1734915 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 2112623 11176569 ~ 11207252 (-)
G76625 NA other downstream 2281144 11017110 ~ 11038731 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 168384 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 214267 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 319295 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 482215 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 878373 14202262 ~ 14204127 (-)

Expression


rfc3(rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
End of interactive chart.

rfc3(rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679) Expression in each Bioproject

Bar chart with 2 bars.
rfc3(rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network