lpar1 (lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242)


Basic Information

Item Value
gene id lpar1
gene name lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2829977 ~ 2850728 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250737.1
CAGCGTCTCAGTGCTACAGTTGTTCTCAGAGTAACGGGACAGAGGTGAATTATTCCGGCTCGCATGCGCGCAACCGCtgggaaataaaatgaattttccaAACGGCCGTGGACTAAACAAAGCTAAACTACAATCGAGCCATCTGTCCTAACAAGACGCGAccgtgtcatttttatttgactttttttggaGTTACTCGTGAGTTCGGAATAACTTTGTTGGATTTCACTGCCGCTGCTGCAAAAACATAACCTTTCAGGATGGATGACGGACAATGCTACTACAATGAAACCATAGCCTTTTTTTACAATCGTAGTCAGAAGTATCTGGCCACAGAATGGAATGCTGTAAGCAAGCTAGTGATGGGACTTGGGATtacagtttgtatttttattatgctggCTAACTTGCTCGTGATGGTGGCTATATACATCAACCGCCGATTTCACTTTCCAATCTACTATCTAATGGCTAACCTCGCAGCTGCGGATTTCTTTGCGGGACTTGCCTATTTCTACTTGATGTTTAACACGGGACCCAATACGAGAAGGCTAACAGTCAGCACGTGGTTGCTTCGCCAAGGCCTCATTGATACAAGCCTTACAGCCTCAGTTGCCAACTTGTTAGCCATAGCCATTGAGCGCCACATAACTGTGTTTCGCATGCAGCTCCATACCCGCATGAGCAATCGACGAGTAGTTGTAGTTATTGTCATCATCTGGACCATGTCGATCATCATGGGCGCCATTCCTAGCGTGGGCTGGAACTGCATCTGTGCTATAGATACTTGCTCCAACATGGCTCCCCTCTACAGCAACTCCTACTTGGGCTTCTGGGCGATCTTCAACCTGGTGACCTTTGTGGTCATGGTCGTTCTATACGCCCACATATTTATGTACGTACGTCAGCGAACCATGAGGATGTCCCGGCACAGCTCTGGTCAGCGGCGGAACCGGGACACTATGATGAGCTTGCTGAAAACGGTCGTGATTGTTTTGGgtgcTTTCATTGTGTGCTGGACGCCCGGTTTGGTGCTTCTCCTGCTGGACGTGGTCTGCGCCAACTGCAATGTCCTGACCTACGAGAAATTCTTCCTTCTTTTAGCGGAATTCAACTCGGCCATGAACCCTATCATATACTCCTACCGGGACAAGGAGATGAGCGTCACGTTCAAGCAGATCCTGTGCTGCCAGCGGCAGGAGAATGTGAACGGTACGGCAGAGGGTTCGGACCGGTCTGCGTCCTCCATCAACCACACGGTCCTGAGCGGGGCGCACCATAACGACCATTCAGTGGTCTGAGGTTCAACACGGGCCGGGATCTACTGAGCACGAGTAAGAAGAGACTGtgaaaaaaggcatttttatcGGCAAAAGACTTGTGGTTATGAGGTTTTCTGAGTTCTTTATGAAGTTTTGACATGATAGTGAACTATTTAAAGGCTAATCCAAGTGGATTTAAATAGCCAGTTTAAAGCAAATTGTATTTGTTCCCGAAAAAAATGGATGAGTCTTTTGGATCGTTGTAATTTTTTTGGCCAGATTGTTGTAAATCGAggagttatctgtttttttgtgtgcgttgTACAGCGGGTGTTGAAGTGAACGGTGTGGTGAAGTTTCCAGTAAAACTCTCCATCGGTTTGCACTAGAAAGAAAGTGTGCATGTAAGGGACCACTGGGAAATAATTTTGGTGAACTGGGCGAAGTacttgattttattcgctttttgttttcttttgcactGCAGGTTCGTCCCTATGATACCAAGCTTCCAtcaaaagataaaagataaaaatattttttccttttatgctctctaaggctgcatttattcaaaaatacagcaaaaaaaattatgcgaAAACTGATGCACAGCCACACAAAATGTAAGGTTCGTAAAAGTAAAGagataagaaataaatacattatattttattcagcgtGTATGCTGATGTTTATAATGATTCGACagattcttttttaaataaatctattcGTGATCCTATTAATGCGGCATTTGTGAACGTATGGGTCATACTTCATGAGAGCAGAATGGTTTAGAATGTAGTTGAATGCTTACGTTTGAATTTGTCAAATTAAAGGACAAGGACCATGAAATATTGATGTAAAGCTGGGTAAACACATACCTCAGTGAAATAGTGTCATTTACTCAACTTTCTCattcctgacacacacacaaattgatAATATCATTCCCAATAATTGTCAAGTGGGATCAACGCCTGTGCCTGTGTTTAAGGTATTATGTACACTAAATAATAGTACAAATTAAGTCTATTTTATGAATGTCCAATTTGTGGCCCAAGAACTGACTGATTTATGGAAGTGATGTAACATACTTTGTGTCGTGGCCTTACTCAAAATCAGATGTCAAcatgtttaaaatcattttgaaattacAGTTCAACGTGATGGAAATTCAGTGATCCAAAATAATTGTACTTCATATACCACCGTGTGtacgtatgtatataatatgtgtatatattcatatgttaGTCAAAAAGggaatgtttattgtttaaagttAAACATCTGAAACCAAggtataggtatttttaaatattgcttctGTTCTGAATGCCTTCTTCAAAATTTAATTCAGTATACAAAATAACATTGTTGGCCAAACAGGGAAGGACAAGTGTTTTTGGTACATTGACGTACAGTGGCCTTACAAAAGTATTTggacatttaaattacatttcaatgttAAACATGAGACTTTTTGAAAACTGAATGCTATACTGCTTTTGCGAACGTCCCGGATCCACTAAAATCATGTTAGCACCAGCTGATTAAACTCTCAGAAATGTTATCCGATGCATATTTAGTGAACGCACCTTGTAAATGCTCAAACACTTGTCAGGCCACTGTAGGAAAGTACAACTTGactgtaatatgtaatatactaTAATGCTAACATCTGtgaatttaacagttttatatgGTGTATTGTTCACGAGAGGGAAAGTTTCTCAGGAAATAACCTCCAGTTTAAAACAGATGTATTTTGTACCCTATGACATTTTGACAGTATTCTTTAATGTTTCTTCGTGTTTGAAATAGCTTTGTGTGTAAAGACAATGAATCCACTTTGATATGGCTAAAATTTGAAGATTTGCACACTTGGAAAAATGGAGGGGTTTTGGCTGAGATgctatatttctaaaaacatatCAGTATTATGACTAGTCAATACTAACATTCTCCGACACTTTACAGTGAGAACATGCATCGATTCACTGTGGGAGTTCGATTTTCCGTTCGTGTTATTTGTCTTACCAGGAAAACGACCTATAAACctctttatttttgcattaaccGAGCAGCAAATGTTCCAGCCCTGTTTTCAAGTCTTGCTCTGTTGCGAAAGCGGGTTTGAAGCAGTCCAGTGCTCCAAACAACGTCCGTCCAGAAAAGACAGCTGTGCTCGACGGGTCATGGGCCATAGGTTCATTCTAGGTTGAAAAATTACAGTGTGTTTCCTTTTACATTTCAACAAATGTGACCATTTCAGAAAATATACTTGTTCCCTTATGAAGTCTGTATGGTAACATTCGCTTAACAATGTCATGCAATTAGTGAAccttcttaaaataaatctgtataTGAGTTGAA

Function

symbol description
lpar1 Enables lysophosphatidic acid receptor activity. Acts upstream of or within cartilage development; hemangioblast cell differentiation; and vasculature development. Predicted to be located in cell surface; endosome; and membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in several structures, including cardiovascular system; mesoderm; musculature system; nervous system; and pleuroperitoneal region. Orthologous to human LPAR1 (lysophosphatidic acid receptor 1).

NR:

description
lysophosphatidic acid receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0070915 lysophosphatidic acid receptor activity molecular_function

KEGG:

id description
K04289 LPAR1, EDG2; lysophosphatidic acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250737.1 True 3644 mRNA 0.40 3 2829977 2850728

Neighbor

gene id symbol gene type direction distance location
musk musk,LOC107653500 coding downstream 20991 2796845 ~ 2808986 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding downstream 33753 2789553 ~ 2796224 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding downstream 42200 2782151 ~ 2787777 (-)
sigmar1 sigmar1,LOC107653128,LOC107573076 coding downstream 466413 2360768 ~ 2363564 (-)
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding downstream 469844 2351663 ~ 2360133 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding upstream 47623 2898351 ~ 2964433 (-)
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding upstream 316995 3167723 ~ 3216811 (-)
LOC122352385 LOC101886557 coding upstream 408949 3259677 ~ 3260615 (-)
snx30 snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846 coding upstream 723568 3574296 ~ 3586506 (-)
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding upstream 739539 3590267 ~ 3594821 (-)
G74436 NA non-coding downstream 48461 2780642 ~ 2781516 (-)
G74367 NA non-coding downstream 369825 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 375115 2453158 ~ 2454862 (-)
G74345 NA non-coding downstream 479311 2350461 ~ 2350666 (-)
G74346 NA non-coding downstream 480286 2349335 ~ 2349691 (-)
G74455 NA non-coding upstream 38717 2889445 ~ 2889948 (-)
G74459 NA non-coding upstream 198504 3049232 ~ 3049518 (-)
G74533 NA non-coding upstream 459059 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 599809 3450537 ~ 3454994 (-)
G74551 NA non-coding upstream 736707 3587435 ~ 3587894 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 62782 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 632548 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 983075 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1341969 1483399 ~ 1488008 (-)
G74031 NA other downstream 1356099 1466751 ~ 1473878 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 486611 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 750884 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1054886 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2168579 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3687394 6538122 ~ 6540973 (-)

Expression


Co-expression Network