cldn7b (cldn7b,LOC107586151,LOC107676017,LOC107678043,LOC107720692,LOC107552057)


Basic Information

Item Value
gene id cldn7b
gene name cldn7b,LOC107586151,LOC107676017,LOC107678043,LOC107720692,LOC107552057
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7539280 ~ 7544064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250744.1
GCTCGCTTCATATTCAAGGTGCGGCTTCGCTCAACAGGTGTCTGAGTCAGGGCAACGGCTCTTAAcggattgttttttttgttaatttaactTCAAAGGATTTTGAATCAGAGCTCGTTCGGAAAGCGATCCGTAACTGTTTGCTGAACTGCTGCTTTTAGACATAGTTTATCTTTTCAGTTAATTGCGAGAAGATGGCAAATAAAGGACTGCAGCTCCTGGGATTTACTCTGTCGCTTTTGGGCTTGATCGGGCTCATCGTTGGCACAATCTTACCTCAGTGGAAGATGTCCGCCTACGTTGGAGATAACATAATCACAGCCATAGCGATGTATCAAGGACTTTGGATGTCGTGCGCTTTCCAGAGCACCGGGCAAATGCAGTGCAAGGTGTACGACTCCATCCTACAACTCGATAGTTCTCTCCAGGCAACTCGTGCCCTGATGATCGTAGCAATCCTCCTCTCGGTGGCAGGACTGGGTGTGGCCAGCATGGGCATGAAATGCACTAACTGTGGTGGCGATGACAAGGTCAAAAAGTCCCGCATTGCCATGACAGGCGGCATAATCCTCATTGTTGGAGCCCTCTGTAGCATCGTCGCCTGTGGCTGGTTTACGAATCAAATCGTCCGGGACTTCTACAACCCCTTCACGCCAGTCAACACAAAgTACGAGTTCGGTGCAGCCATTTTCATCGCCTGGGCAGGTGCGTTCTTGGACGTAATGGGTGGAGGCATGTTGGCCGCTTCCTGCCCAAAGGGTAAATCATCTCCCAAGTACCCCAAGTCCTCCAGACCCCCCAGCAGCAGCAAGGAGTACGTTTGAGCCATGGCGGCAGCTTACAAGCTGGAGAAGATCATGAGAATCACAGAGCATCTGTAGAAGTTTCCCTAGTCAGCTGATCTCAGATCTGTTTAGGTTATAATTTCTTGTATTGTGTTCCACTTAGAATAGAACAAATGGCTAAGATCAGTGACCCTGGGAAATTTTTACTCGTGCTCCAATACAGCAGCCCACCTCAGAAAAAGAGGtcacttctgtttctttcttttgataaGCAccaagtctgtttttttttcccttttataaATCCTGTTACTGATGTGGGTTTGGAAAGAGGGGGTTCTTCCCCAGTATGTTCCTCATTTCATAAGACTGCCATGTTTAGTGAACCATTAAAGAAAGAGGCATGCTCAGGGAAAAATCATCACTTGTACCACTCATTAGCACACAATTTCTATTGTAAAGCCATGTCCTGACCTCAACTGTCTTGCTTGCTTTGTGCCAGACACTGAGGTGAATGACAAGaacaactttttttagtttttatttctttttaagagCCAAAGCCAACATGCAAATTTCTGGTCCACTTTGCTGCATAAAGGCAGGTGACTGACGTACCAGACCTTctctttttaaacattacttCACTTTATACAAATCATCTGAGGGAAGTTTTTGAAAGGAAGTAGTAAAGTACTGAACTACTGAAAGTGAACTGTAATTGAATCAAGTGGTATGTTGATGGAATTTGTCTGAAAATGCTGGCATGCTTAGAGAGCTAGACTGAAACTAGGTGGATAAACAAAAGCTTCACTTGGTTTGGGTGAGGCTAAAGCTAAAGAAACGAAAGCACTAAacctaaaatcagttttttttgggTGGGTTAATCAAAGAAACTTACTTAATTGAATGTTATTTATGCAAAGTGAATTTTTTTAGTTGCTTTTGCGCTCCAGCTTCTCAGTGCCCTTCCTACACAGCCTCGCAatcaatttgtacatattttacgaggtggaTATCATACAACCTCATGGGTAGGCTTAGGGACGGGGTTAGCTGTAGGTCATTCgtacaaatgcatacaaattgTCAACTCATGCGTACTATTCAGCAAAAATCCTATGAATACGTACGAGTGAAATTGTACAACTTAGCCACCTTgtcaaatatttatgatttgCAGTAGGATCAGGCtggttttttccttttattgaGCTAATGTTACAATCTTTTGACACTCCTTTCTTGTTTTATACACTCCATTTATTGTTCAGGATTAAAGGGTGTAGATATTTCTCCCAATTGATCACAGCTGGTTACTATCCAAGACTTGCATGAATTACGCATCTCTTTCCACCCACAgcaatatgtatgtatgttacaTGCAAAAACCGGTCCTCTAtatctgtttggtttttttctttGGTCTTTGTGAATAGACCACTTGAGGTGGGTTGCCCTCAAGTCTATTTAGGATAGTCATATTATATTTGTAACCAgcttatgcaaatatttaactttttgaaACGTTTTTGACTGTTCGGTTTGCAATATAAgaaattttatgtaaataaattttttaaaacaaga

Function

symbol description
cldn7b Predicted to enable structural molecule activity. Acts upstream of or within several processes, including adherens junction organization; inner ear development; and sensory perception of sound. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in several structures, including EVL; digestive system; integument; pleuroperitoneal region; and sensory system. Human ortholog(s) of this gene implicated in Crohn's disease and atopic dermatitis. Orthologous to several human genes including CLDN7 (claudin 7).

NR:

description
PREDICTED: claudin-7-B-like isoform X1

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250744.1 True 2375 mRNA 0.42 4 7539280 7544064

Neighbor

gene id symbol gene type direction distance location
LOC122352928 LOC107675999,LOC107720693,LOC107677996,LOC107552059 coding downstream 6258 7531145 ~ 7533022 (-)
LOC122352925 LOC107551999,LOC107677957 coding downstream 16146 7519599 ~ 7523134 (-)
ponzr10 LOC107552045,LOC107742363 coding downstream 20159 7514651 ~ 7519121 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding downstream 25219 7511724 ~ 7514061 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding downstream 42942 7490561 ~ 7496338 (-)
fgf11b fgf11b,LOC107677987,LOC107586150,LOC107720691,LOC107676016,LOC103026543,LOC108443340 coding upstream 5929 7549993 ~ 7588859 (-)
epob epob,LOC107676014,LOC107586154,LOC107742357 coding upstream 137831 7681895 ~ 7686300 (-)
trnal-uag_1 NA coding upstream 140578 7684642 ~ 7684723 (-)
LOC122353013 LOC107677955,LOC107554294,LOC100002544,LOC106563379 coding upstream 144077 7688141 ~ 7689495 (-)
zgc:172339 zgc:172339,LOC107720553,LOC107586200,LOC107742407,LOC107676025,LOC107554295,LOC107677954 coding upstream 148782 7692846 ~ 7694916 (-)
G75549 NA non-coding downstream 50713 7487473 ~ 7488567 (-)
G75548 NA non-coding downstream 52170 7486212 ~ 7487110 (-)
G75537 NA non-coding downstream 87229 7450667 ~ 7452051 (-)
G75533 NA non-coding downstream 167362 7370932 ~ 7371918 (-)
G75532 LOC107742369,LOC107687312,LOC107586143,LOC107720700,LOC107552065,LOC107682917,LOC107677962 non-coding downstream 169211 7366811 ~ 7370069 (-)
G75633 NA non-coding upstream 65076 7609140 ~ 7616184 (-)
G75654 NA non-coding upstream 143630 7687694 ~ 7687973 (-)
G75666 NA non-coding upstream 216769 7760833 ~ 7761098 (-)
G75667 NA non-coding upstream 217461 7761525 ~ 7763853 (-)
G75749 NA non-coding upstream 553242 8097306 ~ 8099806 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other downstream 10722 7524194 ~ 7528558 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 358459 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 908092 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 998307 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2510767 5019307 ~ 5028513 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 306957 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 316158 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 318221 7862285 ~ 7862366 (-)
rnasekb rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166 other upstream 339278 7883342 ~ 7885482 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other upstream 458297 8002361 ~ 9032489 (-)

Expression


Co-expression Network