nlgn2b (nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341)


Basic Information

Item Value
gene id nlgn2b
gene name nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7615404 ~ 7681744 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250814.1
gggagagagagcgagagcgagagaggcGGACATCGGGATTCTGGACTCCTGAATCTTGACAGCTGTGCGTGAAGTGCGGAATGGATATCTGAGAGACATATACATCTTCATTGTTCACGAGTGgggataataataattattatcgCTATCATCAAATAGCGGCGAGAGAAAGGAAGACGAATCTCAGTTGTTTTTTCCCACTTGTACACAAAAGAAGAGGACTCGTTTATGAGTGAGACGGACTGACAGCAAATGAGAAGTCGTGCCACCGgatggtttttattatttgctgttttttgatGCACGAACGGACTCTGAAATGGGTCGCCATGACGACAGAGCGCTGAGTTAGCCGCTAATGCGTTATACGCATTTGtttctgttattgttttattttatcatttcccTACCTCCTTTATAGTGATAAAATATGTTGTAACCTCGCCGTCAGAAGACACGGGTGTTGTCagataaacagaaagaaaaaaggaggaggaggtgttAAGAGGTGTTTATTCCCCGTTcgtttttccatttcttaaTTTCCCTTATCCTCCTTcctttttatgtcttttttctttcctttccgtttttcttttattgttttggggACGCCGACCGACGCGAAGAAGGTAAATTGATGTGTGAGAGCCTGCGACACGTTCATGACGAATTACCTCAGAAAAAAATACCGATGGCATAAACACCGGCTTCAGCACTGAAGTACGAATAATCACCGGGAAAGAACCGGAGACGCATCGACTACATACCTTTCATCGCGGAAACTAATGAGCAAATCGCAATAGAAGCGCATGTTGCACTAACATCAGGATGAAGTTCTTCACCTCTCAGCGTCAGCAAGTTTCTTCTGTGCTCCACTGAGGACGCACACCCTCACTTCCACAAAGCCCTTAACTTCGGCGTCACCGGGACAGCCTGAAACTCTTCACCCTTGTCTATTTCATATTCATCACCCATCGCTGGGGCGCCGCTCACCCCAGCCGAAGCATGTCATCGGTGGCCGTGGCACGATCGCGGCGGGAGACGGCCCGCTCCTGCCCACGCCGTATATCTGAAACTTGCCTGGTGTGGCTGCTGGGCTTGGCACTTCGCCTGGCGCTGTCCTCTTGCCAGCGGGCAGACCTCACCGCCGCCAAGCACCCTATGGTCACCACAGGCTATGGGAAGCTTCGGGGCGTACGCAAGGAGCTGAACAATGAGATTCTGGGTCCGGTCGAGCAGTACTTGGGCGTCCCCTATGCCACCCCGCCAGTAGGCGAGAGGCGCTTCCAGCCCCCGGAGGCACCAGGCTCCTGGCAGGAGATCCGTAACGCTACCCAGTTTGCACCAGTGTGCCCACAGAACATCCACGGGGTGCTGCCAGAGATCATGCTTCCCGTATGGTTCACCGACAACCTGGATGCTGCCGCGGCTTATGTACAGAACCAGAGCGAGGACTGCCTTTATCTCAACGTCTATGTTCCTACAGAGGACGGTCCGCTTACAAAAAAACACGATGAGTCTTCGATGAACAGACCGAGGGACGAAGATATTAGAGATCGTCGGAAGAAGCCTGTGATGTTGTTTATCCATGGTGGATCATACATGGAAGGAACGGGAAACATGTTTGATGCAAGTGTTCTTGCCGCCTATGGAAATGTGATTGTGGTCACTATGAACTATAGATTGGGCGTCCTGGGTTTTCTGAGCACTGGAGATCAGTCTGCAAAAGGGAATTATGGGCTACTGGACCAAATTCAGGCTCTGCGATGGCTCAACGAGAACATCGGACACTTCGGAGGTGACCCAGAGAGAATCACCATATTTGGCTCCGGGGCTGGAGCCTCTTGCGTCAACCTTCTCATCCTGTCCCATCATTCTGAAGGTTTGTTCCAGAGAGCCATTGCTCAGAGTGGCTCCGCCATATCCAGCTGGTCAGTGAACTACCGGCCCCTGATGTACACCAAGATCCTGGCCAAGAAGGTGGGGTGCAGCTACAGTGACACTGCAGATCTGGTGGACTGTTTGCGAAGGAAGAGCTTCAGAGAGCTGGTGGATCAGGATATCCAACCTGCTCGCTACCACATCGCGTTCGGGCCAGTGGTGGATGGTGATGTGGTACCCGATGACCCTGAGATCCTCATGCAGCAGGGGGAGTTCCTGAACTACGACATATTGTTGGGGGTGAACCAGGGTGAAGGGCTGAAATTTGTAGATGACAGTGAGGGTGAGGATGGTATTTCAGCCGCTTCCTTTGACTACACAATATCAAACTTTGTGGACAACCTCTATGGATACCCAGATGGTAAAGACATACTGCGGGAGACTATAAAGTTCATGTACACAGATTGGGCTGATCGCGACAATGGTGACATGCGGCGTAAAACTCTACTTGCACTTTTTACCGACCACCAATGGGTGGCGCCAGCAGTGGCTACAGCTAAGCTGCATGCTGAGTTCCAGTcccctgtttatttttataccttCCACCACCACTGCCAGACGGAGGCACGACCTGAGTGGGCAGACGCAGCACATGGCGATGAGATCCCGTATGTGTTCGGTGTACCCATGGTGGGCGCCACAGATCTATTTCCCTGCAACTTTTCCAAGAACGATGTCATGCTCAGCGCTGTTGTGATGACATACTGGACCAACTTCGCCAAAACAGGtgatcCGAACATTCCAGTACCACAGGATACCAAGTTCATCCATACTAAGCCCAATCGGTTTGAGGAAGTTATCTGGACCAAATTTAGCTCTAAAGACAAGCAGTACCTCCACATCGGGTTGAAGCCCCGCATCCGGGATAATTACCGTGCCAACAAAGTTGCCTTCTGGCTTGAGCTGGTTCCTCACCTCCACACCCTGCATGAGGACATCATCAACTCCATAACAACACGACTGCCCCCTGGCAGTCCGCATCGGCCTGGCTGGAAGGGCACACCCCAGATCCCCGGCACTCGCTCTACTCGCCATCCCACGGTCTCAACCTACCCACCCGACCCGGACCTCGAAGGTTCCGAACAGCCTCCTGAACGCTTCCCATTCCCGAGTGACACAAGGGACTATTCGACAGAGCTGAGTGTGACAGTAGCAGTGGGTGCTTCACTGCTCTTTCTCAACATGCTGGCGTTTGCCGCATTGTACTATAAGCGTGACAAACGGCATGAGCTGCTGCAACGTCGCCATCGGCGCCTCTCGCCTCAACGTGGGGCAGGGCCAGGCGTTGGCATTGTGGGGGCTCCGCCCCATAACGACCTGGCATTGAGCCAGGAGGAAGAGCTAATGTCCTTGCAGATGAAGCAGCAGAGGGTGGAGCTTGACCACGGCACGCCTCTTCCACCGCGTGGTCTACATGGCGACTTGGAACCTCTAAGACCACCCGTGTGCCCGCCGGACTACACTCTGGCCCTACGGCGGGCACCTGAGGACGTGCCACTTATGACGGCTAACACGCTTTCCATGATCCCCAGCACCATCACTGGCATGCAGCCCCTCCATGCCTTCAACACTTATCCCCCGGCGCCTGCACCAAGTGCTGGACATAGCAACAACGCCCTGCCCCACCAGCACTCCACCACACGAGTATAGTAACCCCTTTGAGGGGACCAGGCCCCCCAAACGCATAGGAACACAGACCTCCTGTACTAAGAGTGGTGCTCTACACGGATATTGTCCAACACACCGCTCCTGTCCTTTTTAAGTCCAGTCCCagcacactctctttctctctcattctttcttgtTTTACTCTTCCTGTTCCTCTCGTTCTTGGAGAAGATTTTGGGTGGAGAAATGTTGGCCACTTTCCCTACTCAATACAGCAGCTATCCccaaccattttattttttctcctgttttttccccctcaagtTTCATTGCCacctttcccttttttttcttttcttctccccGAGTCTTTTGCTCTGCTGTAGCTGTTTCTAGTCCCCAAAAAAGAACAGTTTTTCCTACTTCGGACTGTTTTATAAATCAAGAAAACATAcgtgtaaaatatgtattattgaTAACCTTATAAGgctatgaatgaaaaaaagattctACTATCTAATTTTTACCAGCATTCTTGTGCCAAGTACTGTGATCATCGTCCAATCAGACGCAGTCTAGTGGACGGACGTGGAGAGAATCACCTGAACTGGATTTATTCAAGGAGTTTGcagaattgagaaaaaaaaaagtgccaaatttgtttttcttttctttggtctctctcattttttatgtttactttttgctttttgttttgcactGTCACTGTTATTTGCCTATGGAGAGAAATGAACAACACTACAAATACCTATATAAAAAGATAtagattaattaaatttatatctTGATTGCGCTTTGGGAaatttgcatgatttattttttaagaggaAAATGGACATTCGAGATTCAAGACtcttctttctttgtctttttattgtctttttctgCAACAGtcctctctctcttgctctctctcttattctctgtctctctctatctttctcttctttttttaacatcagCTGTATTTTGTGCACTTCATTTGGAGATTCTTTTCCCTCTGTAGATACATGGTCATATCCGGAAATGAAACTGATTCTTGACGATAATAAAGAGGATAAATAGTtcccttcatttttttcatttataattacgGAAGCTGTGCGACAAAGCTCATCTCCCGGAGAAGGACTGATCAGATCCACGATCCCCTCCACTCCTTTTTTATCccttttatctctctctctctccgctcgTATAGTCCTCTGTAGTAACCCGCGCATTACACCACATTCAGTTAAGGAACGTTCACTGTGTCGCTCTTTCTCTCCGTAAAGACTCGGACTCTGCTGAGTTGGACGTCCAGAGCGACGGGATCAACACCTGCGCCCGTTCCCGCACAGCTGGAGTCTCTCCGTCTCACTCTTTTATCCAGAGCCCAAGAGAGCTCATGACGTGTCCAGAACATTCTTCCCCCTCACTGACACTGACCTTTGAGTGATTATCTCAGTTTGAGCTCACTTGTCATCAGGCGGACATCTTGTTATATGCCCTGTCACAAGTCCCTGTAAGACCTTCCGATTCAGCCTCTCACCTCTCAACGTGTTTTTTCCGAAATCTCTCTTTCAGGGTGCCAAGAACGATCTGGCCGAGAGGAAGCAGGAGACTGGGCGGTTTGCGTTCACGTGTGCGCATGTAAGTGGGAGCAGGACAGATGTGGTCCTAAATGAGCTCTGGATACTGACTCTGGAAGCTTTGTGCATCAGGTTTGAGCCGCGCTGGCGGTCAGAAACTAAATGCAGCCTGAAGAGGCGTACTGTGCTACAGTGGATGAGGCGTCACCCCTCACTCCACTTAAATATACATTCACGATCCATAATGCAAGCAACTGTGCATACCGCTCTCATCTCCATCCATTTTTTTGTTCTCGTCATCTTGTTTTTGAAGTTTCTTGTCGGTGGGTGGATGGAAAACACGCAAGACCACCTTCTGTCATGCCATGACAAAAAACACAAGATgcaaactgtacatttttataagtgTAAGAGATGACATggtctttgtaaatattttgtttattgttggATTCATGGCCAATCGTATCCACTGTAAAAACAGGTGCAAGCtcattcagccaatcacatccCTCCACTCCACGGTTCTGAAGACCCTTATTAGATTTTCATTTGGAGGTTTACAGATACTAAAGCTTCTTTTTCGACAATAGACATTAAATCGTAATGAATGTTGAGGGAAGCGGAAACGAAGCGAATTCCACATTAGAGAATATATTGAGTCAAGAATGAGCGCACTTGATGAGAGTAATTGCATTTGGAATTCAAATTTGCTGCAAGACCCGACAATGCGGTGGACAATAGAGTCGCTGGCTGCATCTGATTCTGTTTCGTTTGAAAAACGAAGGGTGGAACCGATCAGGGCCTAATCAGAATATTTTGTTGGAGAGAGTTAAATGAAAAGGTTTATGTGGAGAAGCTCATTTTATTTCCTCGTACGAGGCCGTAGGATGTAAATCGCTTGAGTCagccctgttttttttctgagaggcCTGCTGTTTGAGTCATTCTCCTGGGTGTTCTTCATTACGCTTCAGTGGACTAAATGACACTGTGGggtgtttgttttctcttaccTGGTTGTAAGTTCTTAGAAATTTAATGTTACCCAAACCATTGGAGATTTGTTGGAGTGGGGGTGGGATTTCCACAGAGTTCTGGCTTATCTCTTTGTTGTGAATTTGAGCTGCATATATTTCAAAGTAGAGAATTTAAACAGTTCATATTTTTCTACAAAATAAAGGGAGAGAGATGATTCTACCGGCAACTGGCAGACATATAAAGCACACTCTCACCAGACATACATGGTGATACTTTTTGTCTGGGTTGCCTATGTATTATAGaggatttaatgaaaaaaaaaatatgaagaaaaaaatactgagaaacACAACTGTTGAGTATTAATGCTTGGTCGCCAAAAAAAGACTTGCACCTGTTGAGTTTCATTTTGTTGAATTTCAGCAACGTAAAAAAGGCTTGAGATGAGGGACTGTATGACCGCAACGGGTCTTAAGATTGAAATTCATATTTCTATTTCCTATACAGGCTACTACACACTGTATGTTGTGTATCTGAACTGGACAACATTAAAAAAGGTTATTAAACATAA

Function

symbol description
nlgn2b Predicted to enable neurexin family protein binding activity and signaling receptor activity. Predicted to be involved in several processes, including neuron cell-cell adhesion; synapse assembly; and synaptic vesicle endocytosis. Predicted to act upstream of or within cell adhesion and synapse organization. Predicted to be located in inhibitory synapse and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in cell surface and synapse. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; gonad; heart; nervous system; and swim bladder. Orthologous to human NLGN2 (neuroligin 2).

NR:

description
neuroligin 2b

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K07378 NLGN; neuroligin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250814.1 True 6699 mRNA 0.47 9 7615404 7681744

Neighbor

gene id symbol gene type direction distance location
LOC122352927 NA coding upstream 77133 7533188 ~ 7538271 (+)
npm1a LOC107678029,LOC107720694,LOC107552000 coding upstream 128048 7484402 ~ 7487356 (+)
kcnip1b kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032 coding upstream 131951 7450917 ~ 7483453 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding upstream 228410 7381076 ~ 7386994 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding upstream 243471 7362680 ~ 7371933 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding downstream 13572 7695316 ~ 7708220 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding downstream 27429 7709173 ~ 7747396 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding downstream 100444 7782188 ~ 7810083 (+)
tmem88a tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001 coding downstream 130462 7812206 ~ 7817701 (+)
LOC122353466 NA coding downstream 182035 7863779 ~ 7863912 (+)
G75502 NA non-coding upstream 126837 7487475 ~ 7488567 (+)
G75516 NA non-coding upstream 207283 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 215371 7399428 ~ 7400033 (+)
G75513 NA non-coding upstream 216041 7398045 ~ 7399363 (+)
G75498 NA non-coding upstream 248799 7365417 ~ 7366605 (+)
G75574 NA non-coding downstream 410 7682154 ~ 7682440 (+)
G75583 NA non-coding downstream 124617 7806361 ~ 7834899 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding downstream 158854 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding downstream 163475 7845219 ~ 7849236 (+)
G75607 NA non-coding downstream 219479 7901223 ~ 7902731 (+)
G75496 LOC107720595,LOC107677995 other upstream 250073 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 275209 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 452181 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 464823 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 621783 6981492 ~ 6993621 (+)
si:ch211-237l4.6 NA other downstream 136066 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 179502 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 179849 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 180216 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 190795 7872539 ~ 7880100 (+)

Expression


Co-expression Network