trpc4a (trpc4a,trpc4,LOC107701104,LOC107555142,LOC107693894,LOC107720578)


Basic Information

Item Value
gene id trpc4a
gene name trpc4a,trpc4,LOC107701104,LOC107555142,LOC107693894,LOC107720578
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9888356 ~ 9900172 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250835.1
CAAGAACTCTCTcaagagccagagagagagagaaagagagagaaagagagagagactatgCAGACAGGACATCTGGTAGCCTTTGCGCTCCAAGTCTCTTCAATGATCAAAATAACTCTCATGGAAAGATGAGAACGCGTCACACCAAAGTGCGGTGAAACCTACTTGGGAAAGCCAATATGGAAGATGATAAACGATCAAAGATCTCGCACATGCACTTTCCGGAGACAACAAACATGTTCGGCTTTGGGAAACTCTGCAGATTAGCTCCATCTTGAATGCGAAATGAGAGGACCGCTGAGCCTCGCCGCGCGTACAAATGGATATTATTTTCCCGCGTTCTATTTCTATCGTTGCGCATTTTCGCGCTTCTTTCTCTGTGGAGGCGGTTGGAGTGTAACGGGTTTTCTTCGCGCTGGGCACCTGTTGTACGTTAGTTAGACGGGATCAGTCACGAGTCAGTGCAACATCCAAAACCAACAGTTGTCTCACATGAAGGCATAGCAGCAATGTCACAGCTCTACTTTCGCAGAACGGACAACTTCTCATACAGGGATCGGATTCCTCTGCGAATAGTTCGAGCCGAGTCTGAACTGTCACCACTGGAAAAGGCCTACCTGTGCGCTGTGGAGAAAGGCGACTATGCCAGCGTTAAACAAGCGCTGATAGAGGCCGAGATCTACTTCAAAATCAGCATCAACTGCATCGATCCTTTGGGACGGACAGCTCTGTTGATTGCCATTGAGAATGAGAATCTGGAAATCATCGAGTTGCTGCTCAGCTTTAACGTGTACGTGGGGGATGCACTTTTACACGCTATACGAAAGGAAGTGGTGGGGGCTGTGGAGCTGCTTTTGAATCATAAAAAGCCCAGCAGAGGCATGCAGGTGCCTCCTATCCTGTTGGATAAACAGTTCTCTGATTTTACCCCTGACATAACGCCCATAATCTTGGCCGCTCACACCAACAACTATGAGATCATCAAGATGCTGGTTCAGAAGGGTGTGTCCATGCCCCAGCCCCACCAGGTACGCTGCAACTGCATGGAATGCGTGTCCAGCTCAGACGTAGACAGCCTGCGACATTCCCGATCCCGCCTCAACATCTACAGAGCCCTGGCAAGTCCCTCGCTCATCGCCCTCTCCAGCGAAGACCCCTTCCTGACGGCCTTCCAGCTCAGCTGGGAGCTTCAGGAGCTCAGCAAGGTGGAGAATGAATTCAAGTCAGAGTATGAAGAGCTTTCCCAGCAGTGCAAGCAGTTCGCCAAAGATCTGCTTGATCAAACGCGCAGCTCCAGAGAGCTCGAACTGATTCTGAACTACAGGGATGATGTGAATCTCCTGGAGGATGAAGGGAATAATGATCTTGCCAGGTTGAAACTGGCTATTAAGTACCACCAGAAGGAGTTTGTAGCACAGCCAAACTGTCAGCAGCTGCTCGCATCTCGATGGTACGATGAGTTCTCAGGCTGGAGACGCCGCCATTGGGCCAGCAAGTTCATCACCTGTATGTTCATCGGATTCCTCTTCCCTTTCTTTTCGTTATTCTACCTGATCGCTCCCAAGAGCCACTATGGCCTCTTCATCCGGAAACCCTTCATCAAATTTATATGCCACACTGCTTCCTATCTGACCTTCCTCTTTCTGCTGCTGTTGGCCTCCCAACACGTGGACCGCCCGAACAATTATTTGGGGTCCACCAAGCAGCGTCCGGATCCCACCAACGTGGAATGGATGATCCTACCATGGGTTTTAGGATTTGTATGGGCTGAGATCAAACAAATGTGGGACGGTGGCTTTCAGGATTACATTCACGATTGGTGGAACCTCATGGACTTTGTCATGAATTCTCTGTATCTGGCCACCATCTCACTGAAGTTCGTCACTTACTTTAGGTGCTCTGAAAACTACGGGCACCGGGAGGGCTGGCCGATGTGGCACCCTGCATTGGTGGGCGAGGCCTTGTTCGCCATTGCCAACATATTTAGCTCCCTCCGACTGATTTCACTCTTCACAGCCAACTCGCACCTGGGCCCCCTACAGATCTCTCTCGGCCGAATGCTCCTGGACATCCTCAAATTCCTCTTCATTTACTGCCTGGTGCTACTTGCATTTGCAAATGGACTCAATCAACTGTATTTCTATTATGAAACTGAGGGCAAAAATACGACAAACAATGTAACATGCAAGGGTATCCGCTGCTCAGAGCAGAACAATGCATTCACCACCATGTTTGAGACATTGCAGTCATTGTTCTGGTCTATATTTGGGCTTGTTTCCCTGTATGTGACCAATGTTGACGCCAAACACGAATTCACCGAATTTGTTGGAGCCACAATGTTTGGGACCTACAACATCATCTCTCTGGTGGTGCTTCTTAATATGCTTATTGCTATGATGAATAATTCCTACCAACATATTGCTGACCATGCTGATATTGAGTGGAAGTTTGCCAGAACGAAACTTTGGATGAGCTACTTTGAGGAGGGCGGCACGCTGCCTCCACCCTTCAACATCATTCCAAGTCCAAAATCAGCATGGTACCTCATCAGATGGATCAAGACCCACTGCTTCAATATTAAACATAGAAAAAGAGCAGAGACGTTTGGATCACTCGGGatgcgCGCTGCTGAAAACGTCCGCACAAACCGTCAGTACCAGgagGTACTTAGAAACCTGGTTAAGCGATATGTGGCAGCAATGATAAGGGATGCCAAAAAAGAAGAAGGATTAACTGAGGATAACTTTAAGGAGCTTAAACAGGACATTTCAAGCTTCCGTTACGAGGTGATGGGAATGATGAAGGGCACTAAGATTGGTGTGTCAAACTCAAAAGGAAACACGGGAGCTTCAAACCTAGTGTATCCTGATAACCCTCTAAAGTGCAATTCTGCTTCAGCTGGAAGTCAACTAAAAGGCAAAATGAGACTGCAGAACGTCGCCGCCTCTGTGATCCAGGAGGGAGGATCCAAAGCCAATCCCTGGAAGCCCGCTGGGTTAAGCAGCCTAGCGGATGGCATCATTTCAAAAAATACTGTTAGCAATCTAATGAACTGCAAAGGGCCAAACAACCCAGGAGAGATTTACTCTGTGTCAGAAGAAGCTGGTGAAtctgaaagtgaagaacaagaTGATGACGAGAAGGGAGAaagcaaaaaccaaaacaatggAACGGAGAAGAACGTAATGACATTGCAGGAGGATGAAGAAATGTCATACATGCGTTATATGTGTGATGAAGAGATGAAGGAAGAAAACGAATACGAAGGGAGCAGATTATAATGGTTTGGAAAAAGTGACAGATTCCGATTGCTGCGAAAGATGCTGTTAACCTGAACTCTCTCTTTATCCCAGAAGCAGCTGTGTGTTGAAGGTCCAGTGCAGGACTGAACATCAAGTGTCGTTCTGGAGTCTCAGGGATGACTGCCACTTTTAGGAGAATATGGAGGCCAACGTTGTCATTCACAGTAATTTACACTCTCAAGTGTGTAAATGCTACTGTAGTTTATCGCTGCTCTGCTCCTTTTTCTGCTGAATCATATCTGAAGGAGCAATAGCCGACCCCTTGCTGTTCTAGACTTTTCATTCTGCCTTACTCTGTTAGATTTAGCATTTTATGCTATCTGTGGTTCCAACGTTAAGAGATGTCATTACCGTCATGCAacctaatattttaataaaggttACTATGCAAATATTTACTACTTTTTACCTTTTTAGTCACGTTTTGCATTGAGCAAGGAGCAGTTGTATTAAAGAAGGAACCGGTTGAAGGGTgtcttttttataaacatggATTAAAGTCCAAAGTAAACACTGCATATCATAAAGTCAGTATGGTACAATGTACTGTGTAGTCATGTCtgtttcctcctcctcctcatttGTATTCATCCTAAAGAACAAGGAGAACACGGTGTTATACAGTTTGCACAGTACATAGTCCTCTATGCTTCTCAATGTTTTGTTCCATCTATCCTTGTTGTTTCCATAACATATTATTGCATCATATTACAGGTAATGatttaatgcacaaatataaataaataactatatgcTGTA
>XM_043250836.1
CAAGAACTCTCTcaagagccagagagagagagaaagagagagaaagagagagagactatgCAGACAGGACATCTGGTAGCCTTTGCGCTCCAAGTCTCTTCAATGATCAAAATAACTCTCATGGAAAGATGAGAACGCGTCACACCAAAGTGCGGTGAAACCTACTTGGGAAAGCCAATATGGAAGATGATAAACGATCAAAGATCTCGCACATGCACTTTCCGGAGACAACAAACATGTTCGGCTTTGGGAAACTCTGCAGATTAGCTCCATCTTGAATGCGAAATGAGAGGACCGCTGAGCCTCGCCGCGCGTACAAATGGATATTATTTTCCCGCGTTCTATTTCTATCGTTGCGCATTTTCGCGCTTCTTTCTCTGTGGAGGCGGTTGGAGTGTAACGGGTTTTCTTCGCGCTGGGCACCTGTTGTACGTTAGTTAGACGGGATCAGTCACGAGTCAGTGCAACATCCAAAACCAACAGGTGAGTTGTCTCACATGAAGGCATAGCAGCAATGTCACAGCTCTACTTTCGCAGAACGGACAACTTCTCATACAGGGATCGGATTCCTCTGCGAATAGTTCGAGCCGAGTCTGAACTGTCACCACTGGAAAAGGCCTACCTGTGCGCTGTGGAGAAAGGCGACTATGCCAGCGTTAAACAAGCGCTGATAGAGGCCGAGATCTACTTCAAAATCAGCATCAACTGCATCGATCCTTTGGGACGGACAGCTCTGTTGATTGCCATTGAGAATGAGAATCTGGAAATCATCGAGTTGCTGCTCAGCTTTAACGTGTACGTGGGGGATGCACTTTTACACGCTATACGAAAGGAAGTGGTGGGGGCTGTGGAGCTGCTTTTGAATCATAAAAAGCCCAGCAGAGGCATGCAGGTGCCTCCTATCCTGTTGGATAAACAGTTCTCTGATTTTACCCCTGACATAACGCCCATAATCTTGGCCGCTCACACCAACAACTATGAGATCATCAAGATGCTGGTTCAGAAGGGTGTGTCCATGCCCCAGCCCCACCAGGTACGCTGCAACTGCATGGAATGCGTGTCCAGCTCAGACGTAGACAGCCTGCGACATTCCCGATCCCGCCTCAACATCTACAGAGCCCTGGCAAGTCCCTCGCTCATCGCCCTCTCCAGCGAAGACCCCTTCCTGACGGCCTTCCAGCTCAGCTGGGAGCTTCAGGAGCTCAGCAAGGTGGAGAATGAATTCAAGTCAGAGTATGAAGAGCTTTCCCAGCAGTGCAAGCAGTTCGCCAAAGATCTGCTTGATCAAACGCGCAGCTCCAGAGAGCTCGAACTGATTCTGAACTACAGGGATGATGTGAATCTCCTGGAGGATGAAGGGAATAATGATCTTGCCAGGTTGAAACTGGCTATTAAGTACCACCAGAAGGAGTTTGTAGCACAGCCAAACTGTCAGCAGCTGCTCGCATCTCGATGGTACGATGAGTTCTCAGGCTGGAGACGCCGCCATTGGGCCAGCAAGTTCATCACCTGTATGTTCATCGGATTCCTCTTCCCTTTCTTTTCGTTATTCTACCTGATCGCTCCCAAGAGCCACTATGGCCTCTTCATCCGGAAACCCTTCATCAAATTTATATGCCACACTGCTTCCTATCTGACCTTCCTCTTTCTGCTGCTGTTGGCCTCCCAACACGTGGACCGCCCGAACAATTATTTGGGGTCCACCAAGCAGCGTCCGGATCCCACCAACGTGGAATGGATGATCCTACCATGGGTTTTAGGATTTGTATGGGCTGAGATCAAACAAATGTGGGACGGTGGCTTTCAGGATTACATTCACGATTGGTGGAACCTCATGGACTTTGTCATGAATTCTCTGTATCTGGCCACCATCTCACTGAAGTTCGTCACTTACTTTAGGTGCTCTGAAAACTACGGGCACCGGGAGGGCTGGCCGATGTGGCACCCTGCATTGGTGGGCGAGGCCTTGTTCGCCATTGCCAACATATTTAGCTCCCTCCGACTGATTTCACTCTTCACAGCCAACTCGCACCTGGGCCCCCTACAGATCTCTCTCGGCCGAATGCTCCTGGACATCCTCAAATTCCTCTTCATTTACTGCCTGGTGCTACTTGCATTTGCAAATGGACTCAATCAACTGTATTTCTATTATGAAACTGAGGGCAAAAATACGACAAACAATGTAACATGCAAGGGTATCCGCTGCTCAGAGCAGAACAATGCATTCACCACCATGTTTGAGACATTGCAGTCATTGTTCTGGTCTATATTTGGGCTTGTTTCCCTGTATGTGACCAATGTTGACGCCAAACACGAATTCACCGAATTTGTTGGAGCCACAATGTTTGGGACCTACAACATCATCTCTCTGGTGGTGCTTCTTAATATGCTTATTGCTATGATGAATAATTCCTACCAACATATTGCTGACCATGCTGATATTGAGTGGAAGTTTGCCAGAACGAAACTTTGGATGAGCTACTTTGAGGAGGGCGGCACGCTGCCTCCACCCTTCAACATCATTCCAAGTCCAAAATCAGCATGGTACCTCATCAGATGGATCAAGACCCACTGCTTCAATATTAAACATAGAAAAAGAGCAGAGACGTTTGGATCACTCGGGatgcgCGCTGCTGAAAACGTCCGCACAAACCGTCAGTACCAGgagGTACTTAGAAACCTGGTTAAGCGATATGTGGCAGCAATGATAAGGGATGCCAAAAAAGAAGAAGGATTAACTGAGGATAACTTTAAGGAGCTTAAACAGGACATTTCAAGCTTCCGTTACGAGGTGATGGGAATGATGAAGGGCACTAAGATTGGTGTGTCAAACTCAAAAGGAAACACGGGAGCTTCAAACCTAGTGTATCCTGATAACCCTCTAAAGTGCAATTCTGCTTCAGCTGGAAGTCAACTAAAAGGCAAAATGAGACTGCAGAACGTCGCCGCCTCTGTGATCCAGGAGGGAGGATCCAAAGCCAATCCCTGGAAGCCCGCTGGGTTAAGCAGCCTAGCGGATGGCATCATTTCAAAAAATACTGTTAGCAATCTAATGAACTGCAAAGGGCCAAACAACCCAGGAGAGATTTACTCTGTGTCAGAAGAAGCTGGTGAAtctgaaagtgaagaacaagaTGATGACGAGAAGGGAGAaagcaaaaaccaaaacaatggAACGGAGAAGAACGTAATGACATTGCAGGAGGATGAAGAAATGTCATACATGCGTTATATGTGTGATGAAGAGATGAAGGAAGAAAACGAATACGAAGGGAGCAGATTATAATGGTTTGGAAAAAGTGACAGATTCCGATTGCTGCGAAAGATGCTGTTAACCTGAACTCTCTCTTTATCCCAGAAGCAGCTGTGTGTTGAAGGTCCAGTGCAGGACTGAACATCAAGTGTCGTTCTGGAGTCTCAGGGATGACTGCCACTTTTAGGAGAATATGGAGGCCAACGTTGTCATTCACAGTAATTTACACTCTCAAGTGTGTAAATGCTACTGTAGTTTATCGCTGCTCTGCTCCTTTTTCTGCTGAATCATATCTGAAGGAGCAATAGCCGACCCCTTGCTGTTCTAGACTTTTCATTCTGCCTTACTCTGTTAGATTTAGCATTTTATGCTATCTGTGGTTCCAACGTTAAGAGATGTCATTACCGTCATGCAacctaatattttaataaaggttACTATGCAAATATTTACTACTTTTTACCTTTTTAGTCACGTTTTGCATTGAGCAAGGAGCAGTTGTATTAAAGAAGGAACCGGTTGAAGGGTgtcttttttataaacatggATTAAAGTCCAAAGTAAACACTGCATATCATAAAGTCAGTATGGTACAATGTACTGTGTAGTCATGTCtgtttcctcctcctcctcatttGTATTCATCCTAAAGAACAAGGAGAACACGGTGTTATACAGTTTGCACAGTACATAGTCCTCTATGCTTCTCAATGTTTTGTTCCATCTATCCTTGTTGTTTCCATAACATATTATTGCATCATATTACAGGTAATGatttaatgcacaaatataaataaataactatatgcTGTA

Function

symbol description
trpc4a Predicted to enable calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Orthologous to human TRPC4 (transient receptor potential cation channel subfamily C member 4).
trpc4 Enables beta-catenin binding activity; cadherin binding activity; and store-operated calcium channel activity. Involved in calcium ion import. Located in basolateral plasma membrane; cell surface; and cortical cytoskeleton. Part of calcium channel complex. Colocalizes with cell-cell junction.

NR:

description
PREDICTED: short transient receptor potential channel 4-like

GO: NA

KEGG:

id description
K04967 TRPC4; transient receptor potential cation channel subfamily C member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250835.1 False 4061 mRNA 0.46 11 9888356 9900172
XM_043250836.1 True 4066 mRNA 0.46 11 9888356 9900172

Neighbor

gene id symbol gene type direction distance location
postna LOC107693921,LOC107701137,LOC107555184,LOC107720541 coding downstream 3309 9865620 ~ 9885047 (-)
scaf4a LOC107720638,LOC107557222,LOC107693920 coding downstream 47957 9830200 ~ 9840399 (-)
sod1 sod1,LOC107555186,LOC107557221,LOC107701135 coding downstream 58864 9827090 ~ 9829492 (-)
tiam1a tiam1a,LOC107693916,LOC107718732,LOC107720640,LOC107557220,LOC107701134,LOC107701133 coding downstream 67775 9764326 ~ 9820581 (-)
grik1a grik1a,grik1,LOC107693913,LOC107718733,LOC107701130,LOC107555187,LOC107557219 coding downstream 126641 9717827 ~ 9761715 (-)
trim3b trim3b,LOC107701140,LOC107557229,LOC107720632,LOC107718737 coding upstream 101165 10001337 ~ 10027656 (-)
fhdc3 fhdc3,LOC107693924,LOC107557231,LOC107720631,LOC107718739,LOC107701144,LOC107555182 coding upstream 128559 10028731 ~ 10036193 (-)
arfip2b arfip2b,LOC107718740,LOC107555180,LOC107701145,LOC107693925,LOC107557232 coding upstream 136467 10036639 ~ 10048457 (-)
dchs1b LOC107718741,LOC107701146,LOC107555179,LOC108438972,LOC108277286,LOC105907404,LOC107693876,LOC107720538 coding upstream 166299 10066471 ~ 10158893 (-)
LOC122353016 slc46a3,LOC107693895,LOC107720589,LOC107701147,LOC107718743 coding upstream 284622 10184794 ~ 10191230 (-)
G76233 NA non-coding downstream 64187 9823035 ~ 9824169 (-)
LOC122352923 NA non-coding downstream 124865 9761809 ~ 9763491 (-)
G76229 NA non-coding downstream 170943 9717033 ~ 9717413 (-)
G76225 LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 non-coding downstream 177648 9701992 ~ 9710708 (-)
LOC122352922 NA non-coding downstream 190968 9695838 ~ 9697388 (-)
G76324 NA non-coding upstream 123323 10023495 ~ 10023701 (-)
G76327 NA non-coding upstream 198093 10098265 ~ 10106179 (-)
G76388 NA non-coding upstream 283922 10184094 ~ 10184522 (-)
G76413 NA non-coding upstream 341787 10241959 ~ 10242182 (-)
G76421 NA non-coding upstream 352853 10253025 ~ 10253861 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other downstream 262951 9572372 ~ 9625405 (-)
cd209 NA other downstream 377926 9489330 ~ 9510430 (-)
G76068 NA other downstream 458556 9427962 ~ 9429800 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other downstream 1332268 8543097 ~ 8556088 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other downstream 1360909 8519666 ~ 8527447 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other upstream 367182 10267354 ~ 10283665 (-)
G76438 NA other upstream 479924 10380096 ~ 10383309 (-)
G76498 NA other upstream 577887 10478059 ~ 10480189 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other upstream 1072709 10972881 ~ 10983738 (-)
G76625 NA other upstream 1116938 11017110 ~ 11038731 (-)

Expression


Co-expression Network