LOC122353004 (LOC107552052,LOC107677992)


Basic Information

Item Value
gene id LOC122353004
gene name LOC107552052,LOC107677992
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7057711 ~ 7059761 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250837.1
TTAATTAACTTGATTACCTCAGGCAGGGTGAAGCGTGAAATATGACCCGAGCTGCCCCGCCATTTTGGATCAAGATGAACTCCTTAATGTGGCATTCGCTTTTTGTTACTTTAATCGCTTCTCGGACCACGACTGCGAACGAGTCCTCGCTGGAGATGAAGGCCGGCTCGTGTGATATCTCGGGCGTCTGGCGCAACGAGCTGGGTTCAACGCTCCGCGTGAAGGCGgaagggtcagaggtcagaggagtgTATCAGACCGCGGTGGAGAGCGCGCGCGGCGCCGCCGGTTTACACCGCACTGCACGGATCATTGGGGTTGCTGGAAACGGGACTCAACCCGCCGTTTCGTTCTCCGTGCTTTGGGAGAAAGGTTCATGCTCTGCTTGGCTcggtcagtgttttattttgcggGATGGTTCACAAGTGCTGAAAACGTTCTGGATGTTGCGCAGCGTAGCCGAGAGCCTGGCAGATAACTGGGGAAGCACCAGgtTGGGAGAAGATCTTTTCTTCAAGACttgaatttgaaatgaactCGATGCCATTTGAATTCCCAAAAGATGTTGATTTTTCGAGGAGGCTGAGCTTTGAGTGTTTAAACCTACCGagacatttaaaagctttttatgaAGCCCTCAAGCTTAATAAAagactgaacaaaaaaagaaa

Function

NR:

description
PREDICTED: avidin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250837.1 True 671 mRNA 0.50 4 7057711 7059761

Neighbor

gene id symbol gene type direction distance location
avd LOC107552052,LOC107677992 coding downstream 80331 6975201 ~ 6977380 (-)
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding downstream 251300 6734920 ~ 6806411 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding downstream 394873 6640993 ~ 6662838 (-)
rassf2b LOC107720572,LOC107708653,LOC107687490,LOC107586133,LOC107678048 coding downstream 419304 6631681 ~ 6638407 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078,LOC107678004 coding downstream 456320 6580621 ~ 6601391 (-)
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding upstream 34884 7094645 ~ 7102080 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding upstream 330409 7390170 ~ 7414303 (-)
LOC122352681 NA coding upstream 355632 7415393 ~ 7425751 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding upstream 368075 7427836 ~ 7441824 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding upstream 430800 7490561 ~ 7496338 (-)
G75366 NA non-coding downstream 409041 6645924 ~ 6648670 (-)
G75294 NA non-coding downstream 675270 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 704827 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 780381 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 901935 6148920 ~ 6155776 (-)
G75433 NA non-coding upstream 18794 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 47997 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 67827 7127588 ~ 7148979 (-)
G75460 pcdh1a3,zgc:123181,LOC107742396,LOC107552012,LOC107586180,LOC107720564,LOC107720566 non-coding upstream 86220 7145981 ~ 7154097 (-)
G75463 pcdh1a4,pcdh1a3,pcdh1a6,LOC107742396,LOC107586180,LOC107677970 non-coding upstream 94387 7154148 ~ 7159460 (-)
sprn2 LOC107578968,LOC107720715 other downstream 426523 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 516738 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2029198 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3144969 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 3449923 3601612 ~ 3607788 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 117563 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 464433 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 471100 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 791260 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 800461 7860222 ~ 7860303 (-)

Expression


Co-expression Network