cbln17 (LOC107720595,LOC107677995)


Basic Information

Item Value
gene id cbln17
gene name LOC107720595,LOC107677995
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7361078 ~ 7362538 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250850.1
tttcctcaaaccCAAGTGTTTTGCCTGCATCAAGATGAAGGTGAGTGCTGCTCTCCTGCAGCTGCTGTGCTGTCTTCTGCTCACTGAAGGACAAACGGAGGTGCCGGATTTTGAGTCCAATGGAAAAAGCATCCAGCCCAACATCTGGACCGAGGTGAGAGATATAAGAGACATGGTGATTGAGCTCAAAGTCAAGTTGGACATGGCGATGAAAGAGAACGCAAAAATGGCAGAACAAGTGCAGGAGCTGAAGAAAGAGAATTCAGGAATTACtgatcaaatgaaaataatcgaAAACCAGCTGAAAGgaattaagaaagaaaatgaagAACAACCAAAAGTGGCGTTTTCAGCCGACCTAGGCATTCGAGGGGATTTAGGTCCTCAGAGTACTGAGATCACGCTGACGTTCAACAACATCTTCACGAACACTGGGAACAGCTACAATCCAGCAACAGGTCTCTTCACTGCACCGGTTAAAGGAGTCTACTACTTCAGATTCACCGCGTGCGGTACTCAAAGCGCACAGTCGCTGGGGGCCAGTTTGCATAAAAACGGGCAGAAGATCGTGTCAGTGGGCCAGTGGCGTAATCACAATCTGCACAGATACGCATCAAATGGAGCTGTCCTGCAGCTGGAAGTGGGTGATGTAGTTTGCGTGAAGCTCCTCCCACATTACACCATCTATGACAGTCCAGATAACCTCAGCACTTTCAGTGGATTCCTCATTCACCCGTTAAAGTGATCAACCATCAAGCACGTTGTTCTCATGAAAACTGCACAAATCACacttatgctttattaatcatatATTCACCGTGAAAAAATCCAACTGCAATAATGATTTCATATGCTATTGTTTGTATTAACtacttttgtatttatgtaatagCATATTAAACATACCAATTTAAGAGGAGACACTAcaggcaaaaaca

Function

NR:

description
complement C1q-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250850.1 True 938 mRNA 0.44 5 7361078 7362538

Neighbor

gene id symbol gene type direction distance location
LOC122353122 pcdh1g33,LOC107720701,LOC103911742,LOC107677963 coding upstream 52421 7305710 ~ 7308657 (+)
LOC122353125 LOC107677985,LOC107720701,LOC107687322,LOC107586138 coding upstream 65878 7292612 ~ 7295200 (+)
LOC122353126 LOC107586138,LOC107677986,LOC107687322 coding upstream 68597 7289342 ~ 7292481 (+)
LOC122353131 pcdh1gb9,LOC107552066 coding upstream 79446 7278859 ~ 7281632 (+)
LOC122353132 pcdh1gb9,LOC107586138,LOC107677986,LOC107687322 coding upstream 83267 7275305 ~ 7277811 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding downstream 142 7362680 ~ 7371933 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding downstream 18538 7381076 ~ 7386994 (+)
kcnip1b kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032 coding downstream 88379 7450917 ~ 7483453 (+)
npm1a LOC107678029,LOC107720694,LOC107552000 coding downstream 121864 7484402 ~ 7487356 (+)
LOC122352927 NA coding downstream 170650 7533188 ~ 7538271 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 601433 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 705168 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 781149 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 816833 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 1170638 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 2879 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 35507 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 36890 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 39595 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 124937 7487475 ~ 7488567 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 20883 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 197855 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 210497 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 367457 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 888971 6454065 ~ 6472107 (+)
si:ch211-237l4.6 NA other downstream 455272 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 498708 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 499055 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 499422 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 510001 7872539 ~ 7880100 (+)

Expression


Co-expression Network