avd (LOC107552052,LOC107677992)


Basic Information

Item Value
gene id avd
gene name LOC107552052,LOC107677992
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6975201 ~ 6977380 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250854.1
TTTTGGATCAAGATGAACTCCTTAATGTGGCATTCGCTTTTTGTTACTTTAATCGCTTCTCGGACCACGACTGCGAACGAGTCCTCGCTGGAGATGAAGGCCGGCTCGTGTGATATCTCGGGCGTCTGGCGCAACGAGCTGGGTTCAACGCTCCGCGTGAAGGCGgaagggtcagaggtcagaggagtgTATCAGACCGCGGTGGAGAGCGCGCGCGGCGCCGCCGGTTTACACCGCACTGCACGGATCATTGGGGTTGCTGGAAACGGGACTCAACCCGCCGTTTCGTTCTCCGTGCTTTGGGAGAAAGGTTCATGCTCTGCTTGGCTcggtcagtgttttattttgcggGATGGTTCACAAGTGCTGAAAACGTTCTGGATGTTGCGCAGCGTAGCTGAGAGCCTGGCAGATAACTGGGGAAGCACCAGgtTGGGAGAAGATCTTTTCTTCAAGACttgaatttgaaatgaactCGATGCCATTTGAATTCCCGAAAGATGTTGATTTTTCGAGGAGGCTGAGCTTTGAGTGTTTAAACCTACCGagacatttaaaagctttttatgaAGCCCTCAAGCTTAATAAAagactgaacaaaaaaagaaa

Function

NR:

description
PREDICTED: avidin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250854.1 True 609 mRNA 0.50 5 6975201 6977380

Neighbor

gene id symbol gene type direction distance location
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding downstream 168790 6734920 ~ 6806411 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding downstream 312363 6640993 ~ 6662838 (-)
rassf2b LOC107720572,LOC107708653,LOC107687490,LOC107586133,LOC107678048 coding downstream 336794 6631681 ~ 6638407 (-)
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078,LOC107678004 coding downstream 373810 6580621 ~ 6601391 (-)
plpp5 plpp5,LOC107720719,LOC107678050,LOC107553701,LOC107705081,LOC107586127,LOC107687571 coding downstream 395253 6575421 ~ 6579948 (-)
LOC122353004 LOC107552052,LOC107677992 coding upstream 80331 7057711 ~ 7059761 (-)
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding upstream 117265 7094645 ~ 7102080 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding upstream 412790 7390170 ~ 7414303 (-)
LOC122352681 NA coding upstream 438013 7415393 ~ 7425751 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding upstream 450456 7427836 ~ 7441824 (-)
G75366 NA non-coding downstream 326531 6645924 ~ 6648670 (-)
G75294 NA non-coding downstream 592760 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 622317 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 697871 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 819425 6148920 ~ 6155776 (-)
G75429 NA non-coding upstream 52613 7029993 ~ 7082458 (-)
G75433 NA non-coding upstream 101175 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 130378 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 150208 7127588 ~ 7148979 (-)
G75460 pcdh1a3,zgc:123181,LOC107742396,LOC107552012,LOC107586180,LOC107720564,LOC107720566 non-coding upstream 168601 7145981 ~ 7154097 (-)
sprn2 LOC107578968,LOC107720715 other downstream 344013 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 434228 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 1946688 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3062459 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 3367413 3601612 ~ 3607788 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 199944 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 546814 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 553481 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 873641 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 882842 7860222 ~ 7860303 (-)

Expression


Co-expression Network