LOC122353024 (or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107741168,LOC107697403,LOC107579158,LOC107743479)


Basic Information

Item Value
gene id LOC122353024
gene name or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107741168,LOC107697403,LOC107579158,LOC107743479
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14056068 ~ 14057063 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250857.1
ATGAGCTCCATGCAGTCAGACTCCTCTGCAAATGCAACCTTTGTTCGTCCTGCTACATTTTATGTCAGTGACTTTTCTAATATCCCACATGCAAAATACTACTATGTGTTCCTGTCTTTAGTATATGTTGTGACTGTTCTGGGTAATTCATTTATCATGTGTATCATTTATTTGGCCCGCAGACTCCACACAGCCAAATACATTGCTGTTTTTCATCTGTCCCTTTCTGATCTGTGTGGAAGCTCAGCTTTGATTCCAAAAATCAtagacatgtttttatttgatcaccAAGACATTTCTTATGAAGCGTGtttaacaaatatgttttttgtatatCATTTCATGAATCTGCAGTCTTTGACACTTCTTGTTTTGGCTTATGACAGATTGGTAGCTATTTGTTTTCCTCTGCGGTATCATGCCATTGTAACCAAACCAGCCATGTTTCTGATCATAGGGGTGATGTGGATTGTGtctgtgacttttttttctgtacttgtAAGTTTTGTGAATAGAATGTCTTTTTGTAGGTCTAATGTActtaatagttatttttgtgattATGCCCCAATCTGTGGACTAGCTTGTAATGATATTTCCATAAATATTATGATGGGTAACATTTCTTATGGTCTCCTGATTTGCACACCACTGATATTGATAATCATCTCATATCTCTGCATTTCTCTGGCATTGCTTAAGATTGCTCATGGAGCTGACCGAATTAAAGCCATAAAAACCTGCACTTCACATCTCATGTTGGTGACAATTTTTTATCTCCCAATTTTATGCAATGTCCTTGCTTCTGTAACAACACCTTTGCATCCAAATGTCCAGATAATTAACAATTCCCTGGCACAGACGTTACCACCTATGTTGAATCCCATCATATACACTCTGAAGACAGAGGAGGTCATGCAATCCATAAAAGACCTGTACAAACGGAGCAGGGTGAACACAACGAGAGAAAGGAAGATGAAATGTAgtataaagtga

Function

NR:

description
PREDICTED: olfactory receptor 1C1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250857.1 True 996 mRNA 0.37 1 14056068 14057063

Neighbor

gene id symbol gene type direction distance location
LOC122353030 LOC107583407,LOC107579158,LOC107686204,LOC107743479,LOC107589583,LOC107741179,LOC107697403 coding downstream 1988 14053056 ~ 14054080 (-)
LOC122352433 LOC107741179,LOC107686204,LOC107589583,LOC107583407,LOC107579158,LOC107743479,LOC107583406,LOC107589561 coding downstream 10016 14043687 ~ 14046052 (-)
LOC122352432 LOC107741179,LOC107686204,LOC107589583,LOC107583407,LOC107579158,LOC107743479,LOC107743480,LOC107697403 coding downstream 19744 14035335 ~ 14036324 (-)
LOC122352431 LOC107589561,LOC107583406,LOC107741179,LOC107589922,LOC107579158,LOC107686204,LOC107589583 coding downstream 24913 14030151 ~ 14031155 (-)
LOC122353045 LOC107697402,LOC107743478,LOC107589583,LOC107583407,LOC107579166,LOC107686204,LOC107741179,LOC107743480 coding downstream 28385 14026685 ~ 14027683 (-)
LOC122352435 or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107741168,LOC107697403,LOC107579158,LOC107743479 coding upstream 26 14057089 ~ 14097135 (-)
LOC122352544 or109-1,LOC107579166,LOC107743480,LOC107743446,LOC107697403,LOC107579158,LOC107743479,LOC107741168 coding upstream 6103 14063166 ~ 14097125 (-)
LOC122352546 or110-1,LOC107579177,LOC107697404,LOC107589615,LOC107686207,LOC107736199 coding upstream 11528 14068591 ~ 14069633 (-)
LOC122352549 or110-2,LOC107741167,LOC107686205,LOC107579177,LOC107686207,LOC107589615,LOC107589600 coding upstream 14317 14071380 ~ 14072339 (-)
LOC122352755 NA coding upstream 216587 14273650 ~ 14277332 (-)
G77379 NA non-coding downstream 61301 13994422 ~ 13994767 (-)
G77378 NA non-coding downstream 68902 13986935 ~ 13987166 (-)
G77352 NA non-coding downstream 250739 13805089 ~ 13805329 (-)
G77351 NA non-coding downstream 251176 13804483 ~ 13804892 (-)
G77347 NA non-coding downstream 255156 13800013 ~ 13800912 (-)
G77390 NA non-coding upstream 2376 14059439 ~ 14097135 (-)
G77432 LOC107744607,LOC107691628,LOC107693969,LOC107747009 non-coding upstream 87828 14144891 ~ 14145304 (-)
G77456 NA non-coding upstream 234790 14291853 ~ 14292718 (-)
G77472 NA non-coding upstream 304291 14361354 ~ 14361734 (-)
G77476 NA non-coding upstream 309218 14366281 ~ 14368555 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other downstream 248249 13806104 ~ 13807819 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other downstream 401655 13643184 ~ 13654413 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 512453 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 523004 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 1266973 12782353 ~ 12789095 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 145199 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 147353 14204416 ~ 14208006 (-)
G77443 NA other upstream 177443 14234506 ~ 14264322 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other upstream 282983 14340046 ~ 14343012 (-)
LOC122353009 LOC107562038,LOC107562041 other upstream 410123 14467186 ~ 14481449 (-)

Expression


Co-expression Network