bsx (bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003)


Basic Information

Item Value
gene id bsx
gene name bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11781496 ~ 11784153 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250865.1
AGTTCTTTAAACGCTGTCAGCCCTTTGTTCGGATTCTTGACGGGTCCACGCGCCTTTTAAGCCAGCGTACAGTGAAAGTGCCGGCTTATGTCGGAGTGACTGTTGCGGGGATAGGGCTCTTGTGAGGCTTTTTCAGCACCACGGGGAGCGACCCCGCCGCTCCTCCCGCCGCCTGCATAATTAATCCGTAAAGAAGTCGTTCAATCCTCCGCCCAGCCGTCGCGCCATTGGTCGAGTGCTAATCTACTTCCTGATTTGCTGCTGTCAGTCTCGATCCAAATAAATAGTAATGTACCTGTACCAGCGTGCACAGGTTGCCAACGAGACTGCGTTCCAGCTTTTAAGGTCCTGAAGACTGGGACCAACCGAGCGATTCTGTTTGCGACACAGGCATCAAAAGCCCCACGGATTGTccctggttttttttttttttaacttttgagATGAATCTGAACTACACTTCTCCGGTCCCCCAGATGCCGACTCAAAGGTCAACGTCGTTCTTCATTGAAGATATTTTACTACATAAACCTAAACCTTTGCGAGAGGTGTTTCCCTCGCCCTTTTCAAACTCTCTTGCCTCCCGGATGCCTCTTATAGAGTATGGATACCCGCTCATGCCTACACCGATACTGGCTCCTCATCCGCATCACCCGCTACACAAACCTGAACACCACCCGTACTTTTTCACCTCCGGAATGCAGATGCCTGCGTTATTTCAGCATCATCCCGAATTACCAGGGAAGCACTGCAGACGCAGAAAGGCCAGAACAGTGTTCTCAGACTCACAGTTATCCGGACTCGAGAAAAGGTTCGAGATCCAGAGATATCTGTCCACACCCGAGCGCGTGGAACTGGCCACGGCGCTCAGTCTGTCGGAAACACAGGTAAAGACGTGGTTTCAAAACCGGAGGATGAAGCATAAAAAACAACTGAGGAAAACGCAAGATGACCAGAAAAACCCAAACGATGTAGACAGATCGCTGGAGAACACGAGCGAGAGCGAAACGCACGAAAAAAGCACAGACGGTAAAAACGGCATGAGTCCGGACAGATACACGCTGGACGACAATGAAGATGATGTCGATATCGAAGACGACATCTGCTCTCCTGAACATTTACTCTAGTGTTATCACCCCGTgaacaaaaaatgtacatatgaATTACAGTCTTTTAGATAGGAAATTATatcggggttttttttattaatattattttttatcatgattttattttgagagCATTGGTCTAATGTTATTCTGTTCAAGCGCTTAAGAAAATTCTGAACAGCTGAGGGACTTTAAAATGATACGTGTCTAttccatattattattattactattactattattattactgcaatAGCCATGGCTTTGTGTCCCACGACTCTGaccatttttgtaaatgtggaATGAATGATAATGTACTGACAGCCTGTAAATAGATTTACGATATGTACTTGATAAATAATCGTTCGAGAGATGTAACAGTTCATTTTCATTCCGATTGAAGTGtaacatttgacattttcagcACTTTCGCGGGACGATGATGATATCGGTTGGCATGCTGTGGACCGACATATTTATGAACTCTAAAACTGTGACTTGTCATTTGTTAAAACAgataatgtatataaacaaatgtacattGAGTGAATTATCCAAGACCGTTCCTAAACGAGCAGcgtctttttttgtgtgctttgaaAGCTTTTCGTGATTTCCTCAGATCCATAAAAGCTGCGGGTTATCACAATTTCGAACATTACTAGAGAAACGAATAACGCTCCGAATTATTGCATAGCCTAACTACCAATAACGGTAACACTAACGACGCGTGGAAGTAATATCAGactaaatataataagaaatcaCTTAAAACAATCAATTAAT

Function

symbol description
bsx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pineal gland development. Predicted to be located in nucleus. Is expressed in forebrain. Orthologous to human BSX (brain specific homeobox).

NR:

description
brain-specific homeobox protein homolog

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24874 BSX; brain-specific homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250865.1 True 1895 mRNA 0.43 3 11781496 11784153

Neighbor

gene id symbol gene type direction distance location
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399 coding downstream 27295 11749965 ~ 11754201 (-)
LOC122352762 hist2h2l,zgc:194989,LOC107719244,LOC108277172,LOC107667924,LOC103356012,LOC107574861 coding downstream 33439 11747207 ~ 11748057 (-)
si:ch73-261i21.5 LOC107588542,LOC107693981,LOC107747005,LOC107578992,LOC107691696,LOC107751407 coding downstream 36938 11731123 ~ 11744558 (-)
vps11 vps11,LOC107744603,LOC107691631,LOC107588528,LOC107693978,LOC107747034 coding downstream 61851 11713900 ~ 11719645 (-)
ift46 NA coding downstream 69898 11709431 ~ 11711598 (-)
lim2.1 lim2.1,LOC107579014,LOC107589671,LOC105028969,LOC105900331 coding upstream 2257 11786410 ~ 11787673 (-)
opcml opcml,LOC107746995,LOC107588660,LOC107686109,LOC107691701,LOC107751394,LOC107577150 coding upstream 281778 12065931 ~ 12186096 (-)
LOC122352422 pknox2,LOC107686111,LOC107691639,LOC107747045,LOC107686209,LOC107751409 coding upstream 432937 12217090 ~ 12283587 (-)
robo3 robo3,LOC107577175,LOC107751391,LOC107589390 coding upstream 527037 12311190 ~ 12430879 (-)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 707517 12491670 ~ 12500849 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding downstream 15286 11701871 ~ 11766210 (-)
G76693 NA non-coding downstream 295068 11485906 ~ 11486428 (-)
G76657 NA non-coding downstream 490656 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding downstream 545806 11234372 ~ 11235690 (-)
G76642 NA non-coding downstream 670661 11096963 ~ 11110835 (-)
LOC122353234 NA non-coding upstream 664389 12448542 ~ 12453651 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 821066 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 894214 12678367 ~ 12678625 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding upstream 1012511 12796664 ~ 12880735 (-)
G77153 NA non-coding upstream 1237500 13021653 ~ 13103059 (-)
ccdc83 NA other downstream 196536 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 574244 11176569 ~ 11207252 (-)
G76625 NA other downstream 742765 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 797758 10972881 ~ 10983738 (-)
G76498 NA other downstream 1301307 10478059 ~ 10480189 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 894837 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 998200 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 1708120 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 1754003 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 1859031 13643184 ~ 13654413 (-)

Expression


Co-expression Network