dgcr2 (dgcr2,LOC107689205,LOC107602057,LOC107746195,LOC107558114,LOC107658593,LOC107758577)


Basic Information

Item Value
gene id dgcr2
gene name dgcr2,LOC107689205,LOC107602057,LOC107746195,LOC107558114,LOC107658593,LOC107758577
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16217026 ~ 16227175 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250866.1
TCCGCGTGAACGGTGAGACGTGAAGAAAATGTCATGTATTATTACGAGGGGTTGATTATAAGCGCCTCCTCCCGTCTGTGGGCTGGAGAACATGGTTGGGATTGTTTTGATGGGACGGTGGCGGAGCCATCTTGTTTTATATCCGTCCTAAGCCCGTGTTACCGAGCCGGAGGAAACGGCCATGGAATATGACACTATATCCCGACCCTAGCCACCTGAAATCAACGCATCCGAGCACCGAAGCTTATTTCTGATCGACGGAACACACAAAGCGCGCGGAATAGGCTTCCGTTGTGATTTATTTCTCGACATCGGCGGCGGCTGCTGCTTCAACTGCATTTTCTCTCGCACATTTTCTCCGGTGTAAGATACTATGAATGGAGGATAAATGTTGCCGAAGGCTGACAGCGGTGGTTTTGTGCTTCTCCTCTTCATTCTGACAATAACGGATCCATCACGGCCAGGTCCACGGCTCGCTCTGGCCAGACTGTTGTCAGACCTGCGCTGCAGTCCTGGCCAGTTTGCCTGCCGGAGCGGAAAAATGCAGTGCATCCCTCTGTCCTGGCAGTGCGATGGATGGACGGCCTGCGAGGACAAAAGCGATGAGATGGATTGCCCTACAATAAAGGAGGAGCGCTATCGTTACAGCAACGGTTTTGAGCCGGTGGAGGACGTGATGGGAGTCGCTCAGCCCGTGCGCTTCAACAGGAAGTGTCCGAGCGGCTGGCACCACTATGAAAAAACGGCCAGCTGTTATAAAGTGTACCTGAGGAGTGAGAACTACTGGCAGGCGGTGGAGACCTGTCAGAAGGTCAACGGCTCCCTCGCCACCTTCGGCACCAATGAAGAGCTGCAGTTCATCCTCAAGATCGAGGTGGACTTCGACGAGAAAGTGTGCGAGCGAAAGGACCAGTgcaaGTTCTGGGTGGGATATCAGTATGTGATTACCAACCAGAATCATTCGCTCGAGGGCCGTTGGGAAGTGGCTTATAAAGgGTCCATGCAGGTGTTTTTGCCTCCTGAGGGTCTGGCTAATTTCGGCGAGGCGAACCCAACCCAGGACAACGTGTTCTGCGCCCAGCTGCAGCGCTTTCAGATCAAGAGCATGAACGAGCGGGGCTTGCACAGCTGGCACGCCGAAAACTGCTACAAAAAATTCCCCTTCCTCTGCAAGAGAAGACAAACGTGCGTGGACATCAAAGACAACGTGGTGAATGAGGGCTATTATTTCACGCCTAAAGGTGATGACCCGTGTCTGAGCTGCACGTGCCACGACGGCGAGCCGGAGATGTGTGTGGCCGCCCTGTGCGAGCGTCCTCAGGGCTGCCAGCATTTCCGCAAGGACCCTAAAGAGTGCTGCAAGTTCACCTGCTTGGATCCCGACGGCAGCAGTCTGTTTGACTCTATGGCCAGCGGCATGCGGCTCATCGTCAGCTGCATCTCTTCCTTCCTCATCCTCTCTCTGCTGCTCTTCATGGTGCACAGACTGAGACAGCGCCGGCGGGAACGCATCGAGACCCTCATCGGAGGAAATCtgCATCATTTTAATCTGGGTCGGCGGGTGCCTGGCTTTGACTACGGGCCGGATGCGTTCGGGACGGGCCTGACGCCTCTGCACCTCTCTGATGATGGTGAAGGTGGCGCGTTCCACTTCCAGGAGCCTCCGCCCCCTTATGCTGCTTACAAATACCCAGATATCCACCACCCCGATGACCCTCCTCCTTCATATGAGGCCTCCATCAACCCAGACAGCATCCTCTACATGGACCTCAGACGGACCGGGGTTCCACTGGCGTCTGGTCACATGAGTGGCCCGGCCGACTCTCTCCAGAGGGACTTCCCCGAGCCGCCGCTGCCCGCCCCGGCGCCGCCGCCGCCCCTGGAGGAGCGCGAGGACTCCATCGACAGCAGCACCCTGCTCGTGTCCCCGGACACCCCCAGCGAATCAGAGAGCAGCATCACGCAGAGCTCCACGGCGGACTGCAGCGGGCCCTCGCTCAGCACCGTGGTGTAGGGGACGTGTCCAGACTGCGCTTCGATGCATGACGGAGGATGCAAGACTCAAGGAAGACTTCCTTTTCAGAGCAAAGGCTTCAGACACGAACGAAAAGACGCCTGTTTGGGGTTTTTATTCAGCGTTTTTTCAGATTGAGCTGCACATGTAAATACCTCCGTCGGCCATCTTGGAGGGCCGATAGAGCGCCTCTCTCTGAGGTTTACACTGGCATGTGGCGATCACCACACTCGGAACGAACGAAGCGGTCGACGAACGGACGTTTTAGGCCTCAGCGGTGTTATCCAGACGACCTGACGTTCTCTCACTGGAATCGTGTCCCGCACACTGACTCTTTCCTGGCACAAAGAAGCAATTTTTCCTTGACTCGTTACTGCTCTGTCCAAACTGACCCTTGGGTGGTCATCTCTACGGGAAGGATCCGTTTGGACACGAGCGGTTATTATCTGGAGTTCTGTGATGtctggtttttacattttcttgtcTGTCGGATCAGTAGCACAAACtcaaaaaatgaagtaaaaaaaaaacaaaaa

Function

symbol description
dgcr2 Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in adaxial cell; polster; and retina. Orthologous to human DGCR2 (DiGeorge syndrome critical region gene 2).

NR:

description
integral membrane protein DGCR2/IDD-like isoform X5

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250866.1 True 2550 mRNA 0.55 11 16217026 16227175

Neighbor

gene id symbol gene type direction distance location
car15 car15,LOC107602060,LOC107758609,LOC107689182,LOC107558080 coding downstream 3341 16209748 ~ 16213685 (-)
rhof rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201 coding downstream 29066 16183854 ~ 16187960 (-)
LOC122352490 kdm2b,LOC107602054,LOC107689109,LOC107746202,LOC107558119,LOC107658591 coding downstream 47212 16146436 ~ 16169814 (-)
ggt1b ggt1b,LOC107758666,LOC107689091,LOC107602052,LOC107658554 coding downstream 121670 16081970 ~ 16095356 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding downstream 187886 16021077 ~ 16029140 (-)
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 144 16227319 ~ 16232580 (-)
stambpa stambpa,LOC107758608,LOC107658597,LOC107558102,LOC107746197,LOC107689905,LOC107602045 coding upstream 5571 16232746 ~ 16239069 (-)
dusp11 dusp11,LOC107602062,LOC107758654,LOC107689237,LOC107558079,LOC107565330 coding upstream 13001 16240176 ~ 16244033 (-)
tcf7l1a tcf7l1a,LOC107602061,LOC107558109,LOC107658535,LOC105912913 coding upstream 29104 16256279 ~ 16283760 (-)
march5l march5l,LOC107718703,LOC107689266,LOC107602066,LOC107658605,LOC107588990 coding upstream 114854 16342029 ~ 16345823 (-)
LOC122352611 NA non-coding downstream 23486 16189534 ~ 16193540 (-)
G77936 NA non-coding downstream 37131 16178600 ~ 16179895 (-)
trnag-gcc_66 NA non-coding downstream 98004 16118952 ~ 16119022 (-)
trnag-gcc_65 NA non-coding downstream 98170 16118786 ~ 16118856 (-)
LOC122353141 NA non-coding downstream 115682 16098995 ~ 16101344 (-)
G77947 LOC107689250,LOC107689777,LOC107602036,LOC107758655,LOC107602063,LOC107758576 non-coding upstream 18480 16245655 ~ 16252193 (-)
LOC122352562 NA non-coding upstream 19478 16246653 ~ 16249749 (-)
G77979 NA non-coding upstream 124222 16351397 ~ 16353048 (-)
G77980 NA non-coding upstream 147045 16374220 ~ 16379551 (-)
G78010 NA non-coding upstream 167039 16394214 ~ 16395645 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other downstream 39915 16172478 ~ 16177111 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other downstream 159719 16030527 ~ 16057307 (-)
LOC122352931 LOC107758671,LOC107689893 other downstream 195252 16016671 ~ 16021774 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 319794 15892644 ~ 15897232 (-)
G77702 NA other downstream 858794 15357685 ~ 15358232 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 188733 16415908 ~ 16490354 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other upstream 205352 16432527 ~ 16437594 (-)

Expression


Co-expression Network