Fish Transcriptome and Expression Database

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model fish

XLOC_006602 (AL772289.1)

Basic Information

Item	Value
gene id	XLOC_006602
gene name	AL772289.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	23961292 ~ 23961406 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012752
TTTGAGAgcgctagctctctgcaactctcacataattgcccactgaagctaagcagggctgcacctggtcagtacctggatgggagaccacatggaaaagctaggttgctgaagg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000117147

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00012752	True	115	rRNA	0.52	1	23961292	23961406

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006601	phactr2	coding	downstream	4931	23919480 ~ 23956361 (-)
XLOC_006600	rgs17	coding	downstream	204592	23728176 ~ 23756700 (-)
XLOC_006599	map3k21	coding	downstream	294713	23634817 ~ 23666579 (-)
XLOC_006598	prim2	coding	downstream	348923	23488282 ~ 23612369 (-)
XLOC_006597	NA	coding	downstream	549661	23408029 ~ 23411631 (-)
XLOC_006603	cog2	coding	upstream	34664	23996070 ~ 24018916 (-)
XLOC_006604	galnt2	coding	upstream	107171	24068577 ~ 24218795 (-)
XLOC_006605	CR762497.2	coding	upstream	165657	24127063 ~ 24127179 (-)
XLOC_006606	urb2	coding	upstream	269921	24231327 ~ 24263682 (-)
XLOC_006607	CR762497.1	coding	upstream	322264	24283670 ~ 24286390 (-)
XLOC_006471	BX537274.2	misc	downstream	13696387	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	23135067	825904 ~ 826225 (-)
XLOC_006595	NA	non-coding	downstream	743474	23212759 ~ 23217818 (-)
XLOC_006585	BX530068.1	non-coding	downstream	1113808	22843830 ~ 22847484 (-)
XLOC_006582	CR550304.1	non-coding	downstream	1176859	22778060 ~ 22784433 (-)
XLOC_006578	BX649385.1	non-coding	downstream	1766124	22191361 ~ 22195168 (-)
XLOC_006611	NA	non-coding	upstream	385583	24346989 ~ 24351543 (-)
XLOC_006616	NA	non-coding	upstream	611680	24573086 ~ 24574746 (-)
XLOC_006617	NA	non-coding	upstream	615859	24577265 ~ 24578022 (-)

Expression

Co-expression Network