si:ch73-261i21.5 (LOC107588542,LOC107693981,LOC107747005,LOC107578992,LOC107691696,LOC107751407)


Basic Information

Item Value
gene id si:ch73-261i21.5
gene name LOC107588542,LOC107693981,LOC107747005,LOC107578992,LOC107691696,LOC107751407
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11731123 ~ 11744558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250890.1
CAGAAAACGTGTTGCGTGATTCGATACCAGAGCATCATGTGGCCAGCCCTCCTAGTGTGTCAGCTCGTCCTGATTCTCCAATCAGAGGCTCAGGGTCCCTGCCTCACCCACCCAACATTCAGAGACCCAGCCAACTCTGATATCACAGTTGTGTGTGGCACAAACAGCATGGAGCTTCAGATTTTGCTGTGCCCCCTGTACTTCTATGGCTATAATGAATCCATGGCGGCTCTTAATAGTCAGTTTGGTAAACCCGAGTGCAAAGGAATCGCTGACTGGACTGTCGACCCACCTATAATAAAATTCCAGTTCTACATCACTGAACCATACATATCCGACTGTGCCAATAAGCTGACGATCACTGAGGAGATCGGATCTGGGCTGTTCTCCGATTTCTCTAGCGTGCAGTCTGTGAACATCTCTGGGGTGGTCACTACTCAGGACCCGAATGCTGGAACCATCACCTACCGGCAGGAAATGAAATACCTCTTTTCCTGTAGATACCCACTGCAGTACTTGGTCAACAACACAgagatgagtgtATCTGGAGTGAGTCTGGCAATTAAGGACAATAACGGTAGTTTCGTCAGCACCCTAAGCATGGTTCTTTTCGAGGACTACACATATACAACTCGTCTTTTCATACCTCCAACGGGTCTCATGCTGAAGACCAGGGTTTTTGTGGAAGTCCGAGCCACTAATCTCACAGAAAGgTTCAATGTTCTGTTGGATCGATGCTATACAACCACCAGTCCTTACCCAGGAAACAGCACATCATTTGACTTGTTTGTCGGATGCAACCTTGATCCACAAACCATAATGGGTGTGAATGGAGAACAGCAGGTGGCACACTTCTCGTTTGAGACTTTTCgctttgtggaacacaaaaacagGATAGTGTCGACCTTTTATCTACACTGCGCCACCAGGCTCTGCGAGACCTCTTTCTGTAGGTCTTTACGGCAGAACTGCACAACGTCCGCAAGGAAGCGGAGGGCCGTCCAATCAGATCAGGGAACCTCAGTGAGTGACGTTGCCACGGTGAGCTCTGGGGCAATCATCACCAGAGTGGATGAACCATTAGGACCTGTTGCCACAGTGTCTAAAAATCCGAAGCAGGACGAGGCAGTGGTGGGCATCTCTGTGGCAGCGGGGGTGTTCGGAGGCCTGTGTGTCGTCATGCTGGCTGTGCTTATCTACAGGATCCGCAGGGACAAGTTCAATGCAGACAAATCAAACCTTTTTCACTGACAGCTCTCAGGGATCGATGTGAAATCCGTAACAAGGGCTACTACCTCTCAAAGTTTAGAGGTCATCCCGTTCCTGTCGAGGAACAACAAAATGTcttgaaacctttttttaaatagacgtGCGCCTTACAGTAAAACAAAGTAAATTCAGTAATGAATGAATTAGATTCATAATCTTTTTGCATGCCAGTGTTCATTGATTTAAACTATACTCCATTTATATATGTGCAATTTTGGGTTTTCTGTAAGAGGGCATTCTtgtataaaagatttttttgttaatgttgtaATTTCATGAATGATTAAAGCAAACCTaggaaatattaatttatggcTGCAAACACTAGCCTTAATTTAAGATTTGTGCTt

Function

NR:

description
PREDICTED: zona pellucida-like domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250890.1 True 1619 mRNA 0.46 11 11731123 11744558

Neighbor

gene id symbol gene type direction distance location
vps11 vps11,LOC107744603,LOC107691631,LOC107588528,LOC107693978,LOC107747034 coding downstream 11478 11713900 ~ 11719645 (-)
ift46 NA coding downstream 19525 11709431 ~ 11711598 (-)
tmem126a LOC107747013,LOC107744609,LOC107693976,LOC107691630 coding downstream 198118 11530837 ~ 11533005 (-)
zpld1a LOC107548885,LOC107693966,LOC107747018,LOC107744615,LOC107576843,LOC107699252 coding downstream 264285 11458833 ~ 11466838 (-)
si:ch211-103f14.3 LOC107693965,LOC107747051,LOC107548846,LOC107699269,LOC107744635,LOC107576832 coding downstream 273621 11452623 ~ 11457502 (-)
LOC122352762 hist2h2l,zgc:194989,LOC107719244,LOC108277172,LOC107667924,LOC103356012,LOC107574861 coding upstream 2649 11747207 ~ 11748057 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399 coding upstream 5407 11749965 ~ 11754201 (-)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding upstream 36938 11781496 ~ 11784153 (-)
lim2.1 lim2.1,LOC107579014,LOC107589671,LOC105028969,LOC105900331 coding upstream 41852 11786410 ~ 11787673 (-)
opcml opcml,LOC107746995,LOC107588660,LOC107686109,LOC107691701,LOC107751394,LOC107577150 coding upstream 321373 12065931 ~ 12186096 (-)
G76693 NA non-coding downstream 244695 11485906 ~ 11486428 (-)
G76657 NA non-coding downstream 440283 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding downstream 495433 11234372 ~ 11235690 (-)
G76642 NA non-coding downstream 620288 11096963 ~ 11110835 (-)
G76627 NA non-coding downstream 640062 11087586 ~ 11091061 (-)
LOC122353234 NA non-coding upstream 703984 12448542 ~ 12453651 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 860661 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 933809 12678367 ~ 12678625 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding upstream 1052106 12796664 ~ 12880735 (-)
G77153 NA non-coding upstream 1277095 13021653 ~ 13103059 (-)
ccdc83 NA other downstream 146163 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 523871 11176569 ~ 11207252 (-)
G76625 NA other downstream 692392 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 747385 10972881 ~ 10983738 (-)
G76498 NA other downstream 1250934 10478059 ~ 10480189 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 934432 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1037795 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 1747715 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 1793598 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 1898626 13643184 ~ 13654413 (-)

Expression


Co-expression Network