tctn1 (LOC107686437)


Basic Information

Item Value
gene id tctn1
gene name LOC107686437
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 617030 ~ 622149 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250891.1
TGCTGAATTAAAAGTAACAGGATCTCTCAGGCCACACTTCCTGGATACCGATGGCAGCGCGTCGTATCCAAGCATGGCGGCGTGGCgttgtttcattattttgatgtatttagaGAGCGCGCTTTGCACCGACGACACGAACACTACAGGACACGCTACTATCCCGCTCAGAGACTCAAACAGCACGTCTTCCGGTCGAAACGAGTCGCTTGATTTCACGGATCCGGGACTCAGCGGATCTCCGGAGGATCCCCGGACTCCCGAATCCGTGACGGCTTTCCCGGATCAGACCGAGTCCTCGGGCACGAGCACCGAATCCCCGCGAGATGAAGAAGGCTTGTTTTCTACACCGGAGGTTCACACGGACTCTCTCGTTGATCGGTTCTTTGGGTTCTTTGGCCGTTCGAACGCGACGACTACATCTCAGAGCCCTGATGCAGGAAATTCTTCAGGATACCGGTATGGAGAAGTCATTGAAACGGTGAATAAGGCTGAAGTGCAGGCTTTCTTCAGCTTTCCTTCCTCTGCAGGAACGGCTCACTGCTTGGACTCAAACCCTGCCGGTTTTCTGAAGGAGCAGACGAGCAGATGTCTGAGGAGCTTCGACGTGGCGCGGGACTGTGAGACGCTTGGAGCTCTGCGCCTGGAGACTTACGTTGATTTCAGCGTCCGCTCTGTGAAGATCCGGGAAGCGAAGGTCGTCGGCGTGGAGGTGTCATCCATCACCCTGCAGTCTTTCGAGGGCACTCGGACCCCGGCCGACCCGGCGGACCCCTCCTCATACGCTCCCGTTCTTCTGGAGTCCGTCGGCGTCTGCAACAACGTGGTTCTTCAGGTGAAGTACACTTTGAGGTACAGCGACGCCGGGGAGATCCTCAACGCCAGAGCATCGCTTTTGCTGGGAGCCGTTAAAAGCGTCACGGTGCCCATTCAGCAAGAGTTTCAGATCACATTCTTGCagGATGTCTCTAGCGCAGCGGTGCTGCCGTTCAGTGGTAATCCTGGCTATGTGTCGGGACGACCCCTGATGGCTGGGACAAGAACAGCAGATGGGATAGTTCAGTCCGCCGACCCGACAGGATCACTCAGCGTCCTCCAGAGCTCGGCGGATCAGGACTGCTTGTCCGGGGCATCTCGCCGCTCTCCTGTCCTGTTCGGGATCGACGTGGTTTCGGGCTGCACTCTGAAGTTGTCTGATGGAGTTAACTGTTCTTTGGTATCTGAAGTCATTTTGTGGGCGTTGAAAGGCCAGAGCTTTCCGGACCATGTAGCCTCGTTCGGGAATTCCTTTCCTCAGAACCCCCTGGACTGGGTTCCCATACAGAACCAGACCACAGCCTTGGACACGCAGGCTTGCAGCATACCGCTGTCTTACCATCTCGAAGTCAAATGGACCAAATACGGCTCTCTGGTGAACCCCCAGGCTCAGGTCGTGAGCGTCATGGAAACAGTCATTACTAACAGCAGCAGCTTGGCCCTTCTCACCAGCGCCGATGGTCTTCTGTCGGTCACGAGCTCCGTGAGTTTTGTGGACGTCTCTGCGTCTGCCAGTCCAGGATTCAGAGTTCCTCCTACAATCGATGCTAAACTACCCTTCGACTTTTTCTTTCCATTCgtataatgaaatgtatatcTCTTTTGGCAGCAACGTGGAAGGAGGACCACTGTCTCTGTAACCATGTTTCTTTGAAAGTTGTGTCTTACTCGAAGTTTTAgatactgtgtatttattatctaGTCGTTTTGTATATAATGCACTGgttctcatttaaaaaataaagaatattttcatAC
>XM_043250892.1
TCTGCTGTGCTGAATTAAAAGTAACAGGATCTCTCAGGCCACACTTCCTGGATACCGATGGCAGCGCGTCGTATCCAAGCATGGCGGCGTGGCgttgtttcattattttgatgtatttagaGAGCGCGCTTTGCACCGACGACACGAACACTACAGGACACGCTACTATCCCGCTCAGAGACTCAAACAGCACGTCTTCCGGTCGAAACGAGTCGCTTGATTTCACGGATCCGGGACTCAGCGGATCTCCGGAGGATCCCCGGACTCCCGAATCCGTGACGGCTTTCCCGGATCAGACCGAGTCCTCGGGCACGAGCACCGAATCCCCGCGAGATGAAGAAGGCTTGTTTTCTACACCGGAGGTTCACACGGACTCTCTCGTTGATCGGTTCTTTGGGTTCTTTGGCCGTTCGAACGCGACGACTACATCTCAGAGCCCTGATGCAGGAAATTCTTCAGGATACCGGTATGGAGAAGTCATTGAAACGGTGAATAAGGCTGAAGTGCAGGCTTTCTTCAGCTTTCCTTCCTCTGCAGGAACGGCTCACTGCTTGGACTCAAACCCTGCCGGTTTTCTGAAGGAGCAGACGAGCAGATGTCTGAGGAGCTTCGACGTGGCGCGGGACTGTGAGACGCTTGGAGCTCTGCGCCTGGAGACTTACGTTGATTTCAGCGTCCGCTCTGTGAAGATCCGGGAAGCGAAGGTCGTCGGCGTGGAGGTGTCATCCATCACCCTGCAGTCTTTCGAGGGCACTCGGACCCCGGCCGACCCGGCGGACCCCTCCTCATACGCTCCCGTTCTTCTGGAGTCCGTCGGCGTCTGCAACAACGTGGTTCTTCAGGTGAAGTACACTTTGAGGTACAGCGACGCCGGGGAGATCCTCAACGCCAGAGCATCGCTTTTGCTGGGAGCCGTTAAAAGCGTCACGGTGCCCATTCAGCAAGAGTTTCAGATCACATTCTTGCagGATGTCTCTAGCGCAGCGGTGCTGCCGTTCAGTGGTAATCCTGGCTATGTGTCGGGACGACCCCTGATGGCTGGGACAAGAACAGCAGATGGGATAGTTCAGTCCGCCGACCCGACAGGATCACTCAGCGTCCTCCAGAGCTCGGCGGATCAGGACTGCTTGTCCGGGGCATCTCGCCGCTCTCCTGTCCTGTTCGGGATCGACGTGGTTTCGGGCTGCACTCTGAAGTTGTCTGATGGAGTTAACTGTTCTTTGGTATCTGAAGTCATTTTGTGGGCGTTGAAAGGCCAGAGCTTTCCGGACCATGTAGCCTCGTTCGGGAATTCCTTTCCTCAGAACCCCCTGGACTGGGTTCCCATACAGAACCAGACCACAGCCTTGGCTTGCAGCATACCGCTGTCTTACCATCTCGAAGTCAAATGGACCAAATACGGCTCTCTGGTGAACCCCCAGGCTCAGGTCGTGAGCGTCATGGAAACAGTCATTACTAACAGCAGCAGCTTGGCCCTTCTCACCAGCGCCGATGGTCTTCTGTCGGTCACGAGCTCCGTGAGTTTTGTGGACGTCTCTGCGTCTGCCAGTCCAGGATTCAGAGTTCCTCCTACAATCGATGCTAAACTACCCTTCGACTTTTTCTTTCCATTCgtataatgaaatgtatatcTCTTTTGGCAGCAACGTGGAAGGAGGACCACTGTCTCTGTAACCATGTTTCTTTGAAAGTTGTGTCTTACTCGAAGTTTTAgatactgtgtatttattatctaGTCGTTTTGTATATAATGCACTGgttctcatttaaaaaataaagaatattttcatAC

Function

NR:

description
PREDICTED: tectonic-1-like

GO: NA

KEGG:

id description
K19382 TCTN1_3; tectonic-1/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250891.1 True 1794 mRNA 0.53 12 617030 622142
XM_043250892.1 False 1792 mRNA 0.53 12 617030 622149

Neighbor

gene id symbol gene type direction distance location
csgalnact1a csgalnact1,csgalnact1a,LOC107713273,LOC107686490,LOC107685172,LOC107562546 coding downstream 5767 579303 ~ 611263 (-)
plpp1a plpp1,plpp1a,LOC106561845,LOC107686491 coding downstream 39807 564059 ~ 577223 (-)
dhx29 dhx29,LOC107744100,LOC107686439,LOC107713347,LOC107562543 coding downstream 81071 521051 ~ 535959 (-)
LOC122352790 LOC107686441,LOC107744170 coding downstream 96090 515783 ~ 520940 (-)
apbb1 apbb1,LOC107750985,LOC107573909,LOC107673752 coding downstream 184388 421501 ~ 432642 (-)
golph3b LOC107595534,LOC107685144,LOC107713339,LOC107686434,LOC107562594 coding upstream 63762 685911 ~ 690128 (-)
LOC122352658 mocs2,LOC107685191,LOC107597632,LOC107595575,LOC107744090 coding upstream 168123 790272 ~ 792344 (-)
LOC122352659 mocs2,LOC107713337,LOC107744090 coding upstream 170174 792323 ~ 793795 (-)
arl15b arl15b,LOC107595536,LOC107713334,LOC107686429,LOC107744085,LOC108433533,LOC107597630 coding upstream 186903 809052 ~ 843011 (-)
LOC122352985 LOC107744083,LOC107597627,LOC107713333,LOC107685138,LOC107595562 coding upstream 225876 848025 ~ 862773 (-)
G73623 NA non-coding downstream 37884 578060 ~ 579146 (-)
G73619 NA non-coding downstream 66742 549195 ~ 550288 (-)
G73613 NA non-coding downstream 92160 524290 ~ 524870 (-)
G73570 NA non-coding downstream 110912 504440 ~ 506118 (-)
G73550 NA non-coding downstream 280637 335758 ~ 336393 (-)
G73624 LOC103390470 non-coding upstream 5629 627778 ~ 635728 (-)
G73643 NA non-coding upstream 46186 668335 ~ 668724 (-)
G73684 NA non-coding upstream 120579 742728 ~ 743650 (-)
G73661 NA non-coding upstream 141734 763883 ~ 765652 (-)
G73704 NA non-coding upstream 173811 795960 ~ 796182 (-)
megf10 megf10,LOC107565847,LOC107673753,LOC107705845,LOC107572185 other downstream 220410 359804 ~ 396620 (-)
LOC122353100 golph3,LOC107595534,LOC107685144,LOC107713339,LOC107686434,LOC107552603,LOC107681169,LOC107746803 other downstream 525709 40690 ~ 91321 (-)
G73662 NA other upstream 71299 693448 ~ 766346 (-)
G73687 mocs2,LOC107685191,LOC107597632,LOC107595575,LOC107744090,LOC107713337 other upstream 167274 789423 ~ 793724 (-)
si:dkeyp-41f9.4 NA other upstream 263007 885156 ~ 888012 (-)
G74058 NA other upstream 823174 1445323 ~ 1448886 (-)
G74031 NA other upstream 844602 1466751 ~ 1473878 (-)

Expression


Co-expression Network