hvcn1 (LOC107686438,LOC107744097,LOC107562590,LOC107685148,LOC107575472)


Basic Information

Item Value
gene id hvcn1
gene name LOC107686438,LOC107744097,LOC107562590,LOC107685148,LOC107575472
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 613874 ~ 616743 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250893.1
ATGTCACTTCCTTCGAGCTGCATCCTGTGCAGAGGATCACGTTCAGATCTGGAGGAGAGGCGGAGTTTAGGGTCAAAGTTTTCACAGAATTCGGATAGCTGCTCCCAAAAGCCGAGACCGCTTGCCTCCAGAGACACGGCTTCCTCCACAGAACAGCGCTCGGCTCATGTGACCCCGGGGAAAAATGTCCCGTTTTCTGAGGCATTTCACGGCGGTGGGTGATCAGCAGAACAGCGCGTCTCCGTGGCACGACGAGGAGCCGCACGACGCCAGTGAAGACCTGGAGCTGGCCACCGGACCACACCTGGGGCAGGTCAGCTTCAGGGACTCGCTCCGCCGCCTCTACAGCACTGAGAGGTTCCAGATCGTCGTTGTTTGCTTGGTCGTCTTGGATGCCATTTTCGTTCTGTGCGAGCTGCTGATCGACTTGTCTATCATTCAAGCAGATCATCACAGAATCGCTCCGCAGGTATTCCACTATCTCAGCCTCGCCCTTCTCACCTTCTTCATGGTGGAGCTGTCTGGAAAGATTTACGCCTATGGATTAGAATTCCTCCACCATAAGTTTGAGGTGTTTGACGGCATCGTGGTGGTGGTGTCTTTCATCCTGGACATTGTGTATATCTCGAAGGAAGATGCATTTGATGCCATGGGGCTTCTGATCTTGCTCCGGTTGTGGAGAGTGGCCAGGATCATAAATGGGATCATAGTGTCTGTGAAAAATCGTGCCCATCACAAGGTTCAGAAAGTGAAGGAGATTAATGAAAAACTTGTTCATCAAGTCAACGAACTTCAAGAGCGGAACACAAAAATGGATCAAGAAATCGCGAGGCTTTGTGCAATCCTGAAACAGAACGGCGTTGAATTCTGACGCTCGGCGCTACTCGTTAAACACATCACAACATGAGGCTGAGTTTAAGATCGATCTCGTCTGTTCATTGCCTATGAAATGTGAAGAAGGTCATGTTACGTTGTGATGTGTTTATTCCCCGGCAGATATATAACAGAACACATAAAGGAGAGGCTTTTTAAAGCCAGTGACTCATGTAGGTCAAATTATACAAAAAGGGAAATCTATAAACTCCCCGGGTTATATGTACTGGAATATTAAACTTGCCTCAAtagatgattgattgatttttattctGAATCACTATTTTCCAAAATCACtatcagtgttgttgttttatcaatgaagggtatatttaatgttttcttgtaaaatgtgaATGTGTTCGAGCAACTGGAAGCTATGCGATAAATATCATTTTGTATAGATATGAAATATTAAGAGCAACATATCCGTCTGTCCGATGAACTGGTTTAATAAAAGTAGTAGTACTTCACTACTAgttaaaaaaagtgaa
>XM_043250894.1
CTGTGCAGAGGATCACGTTCAGATCTGGAGGAGAGGCGGAGTTTAGGGTCAAAGTTTTCACAGAATTCGGATAGCTGCTCCCAAAAGCCGAGACCGCTTGCCTCCAGAGACACGGCTTCCTCCACAGAACAGGTAAAGAACAGCGCTCGGCTCATGTGACCCCGGGGAAAAATGTCCCGTTTTCTGAGGCATTTCACGGCGGTGGGTGATCAGCAGAACAGCGCGTCTCCGTGGCACGACGAGGAGCCGCACGACGCCAGTGAAGACCTGGAGCTGGCCACCGGACCACACCTGGGGCAGGTCAGCTTCAGGGACTCGCTCCGCCGCCTCTACAGCACTGAGAGGTTCCAGATCGTCGTTGTTTGCTTGGTCGTCTTGGATGCCATTTTCGTTCTGTGCGAGCTGCTGATCGACTTGTCTATCATTCAAGCAGATCATCACAGAATCGCTCCGCAGGTATTCCACTATCTCAGCCTCGCCCTTCTCACCTTCTTCATGGTGGAGCTGTCTGGAAAGATTTACGCCTATGGATTAGAATTCCTCCACCATAAGTTTGAGGTGTTTGACGGCATCGTGGTGGTGGTGTCTTTCATCCTGGACATTGTGTATATCTCGAAGGAAGATGCATTTGATGCCATGGGGCTTCTGATCTTGCTCCGGTTGTGGAGAGTGGCCAGGATCATAAATGGGATCATAGTGTCTGTGAAAAATCGTGCCCATCACAAGGTTCAGAAAGTGAAGGAGATTAATGAAAAACTTGTTCATCAAGTCAACGAACTTCAAGAGCGGAACACAAAAATGGATCAAGAAATCGCGAGGCTTTGTGCAATCCTGAAACAGAACGGCGTTGAATTCTGACGCTCGGCGCTACTCGTTAAACACATCACAACATGAGGCTGAGTTTAAGATCGATCTCGTCTGTTCATTGCCTATGAAATGTGAAGAAGGTCATGTTACGTTGTGATGTGTTTATTCCCCGGCAGATATATAACAGAACACATAAAGGAGAGGCTTTTTAAAGCCAGTGACTCATGTAGGTCAAATTATACAAAAAGGGAAATCTATAAACTCCCCGGGTTATATGTACTGGAATATTAAACTTGCCTCAAtagatgattgattgatttttattctGAATCACTATTTTCCAAAATCACtatcagtgttgttgttttatcaatgaagggtatatttaatgttttcttgtaaaatgtgaATGTGTTCGAGCAACTGGAAGCTATGCGATAAATATCATTTTGTATAGATATGAAATATTAAGAGCAACATATCCGTCTGTCCGATGAACTGGTTTAATAAAAGTAGTAGTACTTCACTACTAgttaaaaaaagtgaa
>XM_043250895.1
CACACAACTCTCTTTAGACTGACTTTaaacaggtgtgtgtttgagtcaGAGGGTGAATAAAGCGTTTGCCGTGGTTTCTTTACTCAAGATCTCCGTTCAAgactttactttttattttattgtagatAGTGGCGTGCAAGACTTTGTACACAAGCGCTCGGCTCATGTGACCCCGGGGAAAAATGTCCCGTTTTCTGAGGCATTTCACGGCGGTGGGTGATCAGCAGAACAGCGCGTCTCCGTGGCACGACGAGGAGCCGCACGACGCCAGTGAAGACCTGGAGCTGGCCACCGGACCACACCTGGGGCAGGTCAGCTTCAGGGACTCGCTCCGCCGCCTCTACAGCACTGAGAGGTTCCAGATCGTCGTTGTTTGCTTGGTCGTCTTGGATGCCATTTTCGTTCTGTGCGAGCTGCTGATCGACTTGTCTATCATTCAAGCAGATCATCACAGAATCGCTCCGCAGGTATTCCACTATCTCAGCCTCGCCCTTCTCACCTTCTTCATGGTGGAGCTGTCTGGAAAGATTTACGCCTATGGATTAGAATTCCTCCACCATAAGTTTGAGGTGTTTGACGGCATCGTGGTGGTGGTGTCTTTCATCCTGGACATTGTGTATATCTCGAAGGAAGATGCATTTGATGCCATGGGGCTTCTGATCTTGCTCCGGTTGTGGAGAGTGGCCAGGATCATAAATGGGATCATAGTGTCTGTGAAAAATCGTGCCCATCACAAGGTTCAGAAAGTGAAGGAGATTAATGAAAAACTTGTTCATCAAGTCAACGAACTTCAAGAGCGGAACACAAAAATGGATCAAGAAATCGCGAGGCTTTGTGCAATCCTGAAACAGAACGGCGTTGAATTCTGACGCTCGGCGCTACTCGTTAAACACATCACAACATGAGGCTGAGTTTAAGATCGATCTCGTCTGTTCATTGCCTATGAAATGTGAAGAAGGTCATGTTACGTTGTGATGTGTTTATTCCCCGGCAGATATATAACAGAACACATAAAGGAGAGGCTTTTTAAAGCCAGTGACTCATGTAGGTCAAATTATACAAAAAGGGAAATCTATAAACTCCCCGGGTTATATGTACTGGAATATTAAACTTGCCTCAAtagatgattgattgatttttattctGAATCACTATTTTCCAAAATCACtatcagtgttgttgttttatcaatgaagggtatatttaatgttttcttgtaaaatgtgaATGTGTTCGAGCAACTGGAAGCTATGCGATAAATATCATTTTGTATAGATATGAAATATTAAGAGCAACATATCCGTCTGTCCGATGAACTGGTTTAATAAAAGTAGTAGTACTTCACTACTAgttaaaaaaagtgaa

Function

NR:

description
PREDICTED: voltage-gated hydrogen channel 1

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K22644 HVCN1, HV1; voltage-gated hydrogen channel 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250893.1 True 1367 mRNA 0.45 6 613874 616743
XM_043250894.1 False 1354 mRNA 0.45 6 613898 616743
XM_043250895.1 False 1365 mRNA 0.44 6 614327 616743

Neighbor

gene id symbol gene type direction distance location
mtrex skiv2l2,LOC107744101,LOC107571110,LOC107713350,LOC107686493 coding upstream 49720 536408 ~ 564154 (+)
pstpip2 pstpip2,LOC107744171,LOC107685173 coding upstream 98238 507604 ~ 515636 (+)
sub1a sub1,LOC107686443,LOC107562553,LOC107685153,LOC107713349,LOC107571107,LOC107552599 coding upstream 107754 504360 ~ 506120 (+)
aldh7a1 aldh7a1 coding upstream 193420 412893 ~ 420454 (+)
LOC122353112 LOC107726979,LOC107669787,LOC568883,LOC107568003 coding upstream 376568 227167 ~ 237306 (+)
pptc7b pptc7b,LOC107744096,LOC107713343,LOC107685147,LOC106563180,LOC105909313 coding downstream 6529 623272 ~ 633992 (+)
tbc1d10ab tbc1d10a,LOC105895496,LOC106579927 coding downstream 20927 637670 ~ 649638 (+)
aplnrb aplnrb,LOC107713340,LOC107685146,LOC107686435,LOC107562592,LOC107744094 coding downstream 47208 663951 ~ 665777 (+)
LOC122353206 NA coding downstream 57865 674608 ~ 680564 (+)
itga1 itga1,LOC107686433,LOC107685143,LOC107595560,LOC107562550 coding downstream 92751 709494 ~ 748934 (+)
G73560 NA non-coding upstream 184604 428856 ~ 429270 (+)
G73559 apbb1,LOC107750985,LOC107673752,LOC107565841 non-coding upstream 186359 424953 ~ 427515 (+)
G73519 NA non-coding upstream 216773 349033 ~ 397101 (+)
G73523 NA non-coding upstream 265967 347548 ~ 347907 (+)
G73465 NA non-coding upstream 321607 287869 ~ 292267 (+)
G73589 NA non-coding downstream 35801 652544 ~ 653003 (+)
G73588 NA non-coding downstream 36871 653614 ~ 673309 (+)
G73656 NA non-coding downstream 178592 795335 ~ 795689 (+)
G73710 NA non-coding downstream 188627 805370 ~ 805665 (+)
G73711 NA non-coding downstream 190875 807618 ~ 807846 (+)
c10h5orf63 LOC107715565,LOC107657471,LOC107576909 other upstream 215015 396440 ~ 398859 (+)
LOC122352377 fbn2,LOC107705843,LOC107575594,LOC107565844,LOC562634 other upstream 327634 242243 ~ 286240 (+)
pmaip1 NA other downstream 66363 683106 ~ 774374 (+)
isl1b NA other downstream 75381 692124 ~ 695923 (+)
fstb fstb,LOC107685190,LOC107713293,LOC107686430,LOC107744087,LOC107597631,LOC107595577 other downstream 179268 796011 ~ 801923 (+)
rbm18 rbm18,LOC107597621,LOC107595545,LOC107685132,LOC107686423 other downstream 317326 934069 ~ 945860 (+)
LOC122352734 LOC107744074,LOC107597614,LOC107686419,LOC107685127,LOC101884949,LOC107713324,LOC107595548 other downstream 460953 1077696 ~ 1084039 (+)

Expression


Co-expression Network