grm5a (grm5a,grm5,LOC107693909,LOC107720647,LOC107718729,LOC108423821,LOC107555132)


Basic Information

Item Value
gene id grm5a
gene name grm5a,grm5,LOC107693909,LOC107720647,LOC107718729,LOC108423821,LOC107555132
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9633865 ~ 9658549 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250903.1
TGGACTGCGAGAAGGAGacgtgaatatatatttttctcaaagTCACATGACGCGCGCGAGAGTTGTAGCTGAAGTGAACGCGCATCGCACGCGCTCATACACCCAGAGACACTCCGGTTGTGAGAAGACGAGCGATGGACCAAATTAACGACTGCACGATGCCCTGAGGGACCTACCGGTATTCGACACTCTGATCTGAGAGGGCCGAGGAAATGGGGATTTTACATTTGCTGGTGTTTGTGCTGCTCGGAGACAGATTGGGTCCTACGCGGCCAGACATTTTAGCGAAGGCCCAAGCCAGCGAGCGACGCGTCTTGGCGCACATTCCCGGCGACATCATCATCGGGGCTCTTTTCTCCGTCCACCATCAGCCGCCGGCCGACAAGGTTCACGAGCGCAAGTGTGGCGCTGTACGCGAGCAGTATGGCATCCAGCGGGTGGAGGCCATGATGCACACCCTGGACCGCATCAACAAAGACCCGCAAATCCTACCCAACATCACGCTGGGCTGCGAGATCAGGGACTCCTGCTGGCATTCGGCCGTGGCTCTGGAGCAGAGCATCGAGTTCATCCGTGACACTCTGGTCTCAGCCGAGGAGGAAGAAGGTATGTCTAAGTGTTCAACTGAAGGCGGAGGAACACCTATGAAAGGGAAGAAGCCCATTGTAGGGCTGATCGGGCCTGGATCCAGTTCTGTGGCCATCCAGGTTCAGAATCTCCTTCAGCTTTTCAACATACCCCAGATTGCGTATTCGGCAACCAGTATGGATCTCAGTGATAAGTCTTTGTACAAGTACTTTATGAGGGTGGTGCCTTCTGACGCCCAGCAGGCCAGAGCCATGGTGGACATCATCAAAAGATACAACTGGACCTACGTTTCTGCCATTCACACTGAAGGGAACTACGGCGAGAGCGGGATGGAGGCCTTCAAAGACATGGCAGCAAAGGAGGGCATCTGTATTGCCCATTCTGACAAGATCTACAGCAATGCTGGAGAACAGAGTTTCGACCGTCTGCTCGATAAGCTGAGGAGCCACCTGCCCAAGGCCCGAGTGGTGGCGTGTTTCTGCGAGGGCATGACCGTACGTGGCATCCTCATGGCCATGAGACGCCGCCGTCTAGTTGGAGAGTTTCTGTTGGTTGGCAGCGATGGTTGGGCTGACCGCTATGATGTCACTGACGGCTTCCAGAGGGAGGCAGCCGGGGGAATCACTATCAAGCTGCAGTCTGCTTACGTCACGTGGTTTGATGATTACTACTTGAACCTGCAGCCAGACACGAACATCCGGAACCCCTGGTTCCCTGAGTTCTGGCAGCACCGCTTCCAGTGTCGGCTGAAGGGACATCCTCAAGAGAGCACCAAATACAACAAGACCTGCACCAAAAAAGAGTCGCTCCGACACCAGTACGCTCAGGACACGAAAATGGGCTTTGTGATCAATGCCATCTACTCTATGGCTTACGGCCTGCACGCCATGCAGAAGTCTCTGTGTCCCGGCTACGCAGGTCTGTGTGAAGCCATGCGGCCGATTGATGGAGGTAAACTCTTAGAATTCCTCATGAGGACAAACTTCACTGGCGTCTCGGGAGAAGTGGTGCTGTTTGATGAGAACGGAGACTCCCCGGGGAGGTATGAAATCATGAACTTTAAACAGATGAGTGAGGAGGACTATAGCTACATCCACGTGGGCAGCTGGGACAACAGTGGGCTGAAGATGGATGACGAGGAGATTTGGGCAAACAGCAGTGCCATCATGAGATCAGTGTGCAGCGATCCCTGTGAAAAAGCTCAAATAAAGGTTATCCGTAAGGGTGAGGTGAGCTGCTGCTGGACCTGCACTCCATGTAAAGAAAACGAGTTTGTGTTTGATGAATACACCTGTCGAATGTGCGAGCTTGGATCTTGGCCTAGAGATGACCTCACAGGCTGTGAGCCAATCCCGGTGCAGTACCTTCTGTGGGGAGATCCTGAGCCAATTGCCGCCGTGGTCTTCGCCTGCCTCGGCCTGCTCGCCACCATCTTCGTCACTTTAGTCTTCATCAGGTTCCACGATACGCCGGTGGTGAAGTCCTCCAGCAGAGAGCTGTGCTTCATCATCCTGGCCGGCATCTGTTTGGGATACCTGTGTACGTTCTGCCTCATCGCTAAACCGCACGTGGCCTATTGTTACCTGCAGAGATTGGGAATCGGGCTCTCGCCGGCCATGAGCTACTCGGCCCTGGTCACCAAGACCAACCGCATCGCTCGCATCCTAGCCGGCAGCAAGAAGAAAATCTGCACCAAGAAGCCTCGTTTCATGAGCGCCTGCGCCCAGCTGGTCATCGCCTTCATCCTGATCCTGATTCAGCTGGGCATCATCGTAGCGCTCTTCATCATGGAACCTCCGCAGGTGATCCACGACTATCCGTCCATCCGCGAGGTGCACCTCATCTGCAACACCACCACGCTGGGAGTGGTGGCGCCGTTGGGCTACAACGGGCTGCTCATTCTCAGCTGCACCTTCTACGCCTTTAAGACCCGCAACGTCCCCGCCAATTTCAACGAGGCCAAATACATCGCGTTCACCATGTACACCACCTGCATTATCTGGCTGGCTTTCGTGCCCATTTATTTCGGGTCAAACTACAAGATAATCACCATGTGTTTCTCCGTTAGCCTCAGCGCTACCACTGCGCTGTGCTGCATGTTCGTGCCCAAAGTCTACATCATGTTGGCCAAACCTGAGAGGAACGTACGCAGCGCTTTCACCACGTCGACCGTTGTGAGGATGCACGTGGGTGATGGGAAGGCTGCCTCGGCCGCTAGCCGCTCTAGCAGCTTGGCTAACCTGTTCAGACGAAGAGGATCTGGCACAGACACTGTCAGTTCCAACGGCAAAACAGTGACCTGGGCTCAGAACGAGAGAAGTTACAGGCCAAACCTATGGAAGCGGATCTCAATCCACATCAAGAAAAAAGAGGAGGCCAACCAGACGGCCATTATTAAGCCCTTCTCAAAGGGCTGTGATCGGCCTCCAGACCCCGGGGTGAAGCTGGCATACGACGGCTCTCAGAAGAACCAGCGCTACCCTGTAACCTACCGGCCCCGGACCCCTTCTCCTCTGCCCACCGTGTGCCAGCGGCCTTCGATGCAGCGGCGGGAGATGGATGATCGTGACGAAGAGCGCGCGGCGGTGGTGGCTATACCCTCATACCTGACGGAGCGCTTGCAGCACGGCGCCCCGTCCCAGACTTGCATCATGGATCAGATCAGCTGCGTGGTCAGTCGATTCACAGCCAACATCAGTGAGCTCAACAGCATGATGCTGCCGGGGTCACCGCCGGGAACGGCCGTAAACACGGCCTCCACAGCCCAGGTCCCAAGACCCTGCTCCCCTACTTTCCGCCTCCACCCGCAAGAAAGGCCACATCCAACCACCGTCACCACCTACGCAGATGTAGTGGCTGCGGCGAACACCAACCCGCGCTCCGCGGTCGGCATCGCCGGGGGCATCATCGCCGGAGGGAGTAGCCGGGCTTCACCCGCCAGCCTTTTTGACAGCACCTACGACTCTTCGTGTGCGGTCAGGACCACTGATTTTGAGGACCTGGGCGTCTTGACACCACCCTCGCCATTTAGAGACTCCTCCGTGGACTCCATCAGCGAATCCCCCACTTCGCCGGCCTCGGAGCTGCCGCTGTGCGAGCCCTGCTCCCCGATTTACGACCAGCTGGTGCTTCGCCACTACAGCCAGAGCTCCTCTTCGCTCTGAGAGATTATTCGGAGCGCAGGAAGGAGACAGAGAGGCAGCTACTGAGATCCTGCATCTGCTTAGATGGCAAAACCCAGCTGTAAATGTCAAGGAGTGTAAACTCTTAAATATAGAAGCACTCGCTGAGGACGTTTTATGGTGCTTGGAATCCAGCCCGTCCTCAAAATCCCAAGCTGCGTCGGGGAAGGCACTTCACCAAACTGCTTTTCGGATAATTAAGGATGTACTTGATATGCTCTCGTGCGCCAGGGCGCTCTGACACGTTTATGGTCCTTCTTGGCAAGATGTTACCGGTGTTGGTCAGTTTGTGTACTGCAAGTTTTCCTGGCTTTTCAGCTACTTAATAACATTCCAACGACGTCAATCTACACAGGAGGGAGAAATTACAAAACTCCTGCTCCAGGGGATGTCATTTTTATCTCTCTCGTCGCCTGTCAGCAAGATTCCTGAACGTCTTGCACGATTCTTCACGTACAACTGAAGCGCAAACGGTTGAATGTAGGACCAAATGAAGCCTTTGAGCGCAAAgtagtttgtttaaatattggtcatttttgttatttcccTAGTTTAGAGGTTGCATGTTCTGCCACTTCATATaacttcatataaaataatatttattattatatttttcataataaatcaaatagaaGGGGTTGCGAGGGCAGGATTATTTAGATATCGAGCAAATCTAACACTTTAATATAGATAATATGTCTTTCAGATGActggatttatttatatgaacatGTCCCAGTATTACTTGAAGTATTTATCTtataaatctttaatttttaatttgaaaagatgagatttgaaaaaattatacaaactataaaatatttacattaccGCTTAAAGGTTTGGGGTGAataggattttattcagtaaggacaAAAGTTATAAAATCATCTTGAAAGTAATCACTGTTttcaaaagatatatatataattagataataaaatgtttttttatcgtCAGATTagcatattcaaattaattttgaagGATTTCTGACACTGacgaaattcagctttgccatcacaggaatacattt

Function

symbol description
grm5a Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain and retinal inner nuclear layer. Orthologous to human GRM5 (glutamate metabotropic receptor 5).
grm5 Enables G protein-coupled receptor activity; glutamate receptor activity; and identical protein binding activity. Involved in several processes, including calcium-mediated signaling using intracellular calcium source; cellular response to amyloid-beta; and regulation of cellular protein metabolic process. Is integral component of plasma membrane.

NR:

description
LOW QUALITY PROTEIN: metabotropic glutamate receptor 5-like

GO: NA

KEGG:

id description
K04604 GRM5; metabotropic glutamate receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250903.1 True 4812 mRNA 0.52 9 9633865 9658549

Neighbor

gene id symbol gene type direction distance location
chordc1b chordc1,chordc1b,LOC107693908,LOC107720649,LOC107718728,LOC107701124 coding upstream 4772 9625591 ~ 9629093 (+)
tpte tpte2,LOC107685006,LOC107720658,LOC107718790,LOC107701101 coding upstream 203029 9425686 ~ 9430836 (+)
LOC122352939 LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193 coding upstream 211058 9416483 ~ 9422807 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding upstream 217526 9407922 ~ 9416339 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding upstream 244137 9325824 ~ 9389728 (+)
rab38b LOC107693892,LOC107557212,LOC107718792,LOC107701102,LOC108277304,LOC108423822 coding downstream 2168 9660717 ~ 9666861 (+)
bach1b LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 coding downstream 41553 9700102 ~ 9710720 (+)
ugt5d1 ugt5d1,LOC107720577,LOC107557224,LOC107693893 coding downstream 184999 9843548 ~ 9846885 (+)
trim47 trim47,LOC107701143,LOC107718738,LOC107557227,LOC107720633,LOC107693923 coding downstream 336256 9994805 ~ 10000994 (+)
synj1 synj1,LOC107693927 coding downstream 533912 10192461 ~ 10216083 (+)
LOC122353086 NA non-coding upstream 350217 9277433 ~ 9283648 (+)
G75984 NA non-coding upstream 360576 9266815 ~ 9273289 (+)
G75974 NA non-coding upstream 380384 9245998 ~ 9253481 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 921667 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 929005 8703514 ~ 8704860 (+)
G76150 NA non-coding downstream 54278 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 104457 9763006 ~ 9766783 (+)
G76182 NA non-coding downstream 164415 9822964 ~ 9824196 (+)
G76184 NA non-coding downstream 166368 9824917 ~ 9825970 (+)
G76248 NA non-coding downstream 226720 9885269 ~ 9902178 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other upstream 237818 9349172 ~ 9396047 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other upstream 426530 9076866 ~ 9207335 (+)
G75937 NA other upstream 898869 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 917588 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 1052737 8580009 ~ 8581128 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 33550 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 267772 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 285185 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 659304 10317853 ~ 10320345 (+)
LOC122352518 NA other downstream 1480289 11138838 ~ 11146033 (+)

Expression


Co-expression Network