gabrr3a (gabrr3a,gabrr3,LOC107589257,LOC107697425,LOC107686176,LOC106563567,LOC106603079)


Basic Information

Item Value
gene id gabrr3a
gene name gabrr3a,gabrr3,LOC107589257,LOC107697425,LOC107686176,LOC106563567,LOC106603079
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13699234 ~ 13710448 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250908.1
GGAAAGGATGCTGGGTAAGGATTTCCAGAGAGTTAGACTGATCCCATACCGTCTCTCTATTTCTCCCAGAATCAGATCCTGGAGCTCAGGACTCGGTCATGAACTTTGCTCTCTCTGTACTGAGGCTGATGTGCCTGGCCTGGCTGTGGCCCGTCGCCCTTCTCAAAGGAAGCAACACACAAAACCAGCGCAGGCACAAGGACGTCTACCTGGGCGAAAGCACACGGCACAAACATGGAGGACGAATAGACTTCAAAACGAAGAAGTCTGACAGCACCAAATCTCTGCTGATTAAATCAGAGCAGCTCTTGAGAATAGAAGATCACGACTTCGCCATGAGGCCTGGTTTTGGAGGTTCGGCTATTCCAGTGGGCATCGATGTGCAGGTGGAGAGCATTGACAGCATTTCAGAGGTCAATATGGACTTCACCATGACCTTGTACCTTAGGCATTACTGGCAGGACGACAGACTGGCCTTTCCGTCCAGCAATAACAAAAGCCGAACTTTTGACGCTCGCCTGGTGAAAAAGATATGGGTGCCAGATGTCTTCTTTGTTCACTCCAAGCGTTCTTTCATTCATGACACCACCATGGAAAACATCATGCTCAGAGTCTATCCAGATGGAAACATTCTCTACAGCGTCAGAATCACGGTGACGGCTCTCTGCTCCATGGACTTCAGCCGGTTTCCTCTAGACACGCAGAACTGCTCTCTAGAGCTGGAGAGTTACGCTTACAATGAGAACGACCTCATGCTCTATTGGAAGAATGGGAACGATTCATTAAGGACTGACGAGATTGCACTCTCGCAGTTTTTTATTGAAGAATTCCACCCTTCCTTCGGGCTAGCCTTCTACAGCAGCACCGgcTGGTATAACCGACTGTACATAAACTTCATCCTCAGGAGACACATATTCTTCTTCATGCTGCAGACATACTTTCCCACAATGCTTATGGTCATGCTCTCCTGGGTGTCCTTCTGGATCGACAGGAGAGCCGTACCTGCCCGTGTGTCTCTAGGAATCACCACCGTGTTGACCATGTCTACTATAATAACAGGCGTCTCAGCGTCCATGCCTCAGGTGTCTTACGTGAAGGCTGTGGATATTTACCTTTGGGCCAGTTTCCTCTTTGTTTTCCTGTCGGTCATTGAATATGCTGCTGTGAACTATTTCACCACGGTGGAAGAGATGAAAAAGCTTCAGAAAGGAAAGCTTCCGGTTTCCTACGACGCAACCCAGGCTATGGCCTACGACGGCTGTTTTCACGATGACATAGACGTGTCTCCGTTCCCCGAGCTCCCCACCACACCCAGCACGACTCGGACCATCCCTCCCAGAGCCTCCTCCACCGAGCCTCCTCCCACCGAAGGCACCAGACTCTGGAGGAAACGCTCGGTCGGCAAGAACATCAGATTCATAATGAGCAACAGCTACATGATTGACTCGTACTCCAGGATCATCTTTCCAGTGGCGTATCTTCTCTTCAACATCATCTACTGGTGCATCTACTCCTGA

Function

symbol description
gabrr3a Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye. Orthologous to human GABRR3 (gamma-aminobutyric acid type A receptor subunit rho3).
gabrr3 Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to be located in plasma membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane.

NR:

description
gamma-aminobutyric acid receptor subunit rho-3-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05190 GABRR; gamma-aminobutyric acid receptor subunit rho

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250908.1 True 1517 mRNA 0.50 9 13699234 13710448

Neighbor

gene id symbol gene type direction distance location
rhbdd2 rhbdd2,LOC107728880,LOC107686174,LOC107577912,LOC107697423,LOC107743386 coding downstream 15097 13681141 ~ 13684137 (-)
prr11 LOC107728831,LOC107686171,LOC107589205,LOC107579091,LOC107743468,LOC107697420 coding downstream 37095 13659137 ~ 13662139 (-)
smg8 LOC107686170,LOC107589184,LOC107577889,LOC107743383,LOC107697419,LOC107728850 coding downstream 40547 13654755 ~ 13658687 (-)
pom121 pom121c,pom121,LOC107728848,LOC107697416,LOC107743381,LOC107577844,LOC107686167 coding downstream 61010 13628833 ~ 13638224 (-)
ripk4 ripk4,LOC107589146,LOC107577855,LOC107686166 coding downstream 76366 13612144 ~ 13622868 (-)
si:ch211-244c8.4 si:ch211-244c8.4,LOC107728884,LOC107686180,LOC107743390,LOC107697427,LOC107577989 coding upstream 43721 13754169 ~ 13758259 (-)
smg6 LOC107728864,LOC107589291,LOC107686181,LOC107578000,LOC107697428,LOC107743389 coding upstream 63396 13773844 ~ 13786662 (-)
LOC122352428 LOC107686199 coding upstream 301096 14011544 ~ 14014981 (-)
LOC122352429 LOC107578824,LOC107743443,LOC107697381,LOC107686201,LOC107743445,LOC107697382 coding upstream 306189 14016637 ~ 14017638 (-)
LOC122352430 LOC107743476,LOC107578847,LOC107743445,LOC107589561,LOC107583406,LOC107697382 coding upstream 312387 14022835 ~ 14023833 (-)
G77315 NA non-coding downstream 28788 13669972 ~ 13670446 (-)
LOC122352841 NA non-coding downstream 142577 13548254 ~ 13556657 (-)
G77294 NA non-coding downstream 143042 13555556 ~ 13556192 (-)
G77284 NA non-coding downstream 210401 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 370341 13328642 ~ 13328893 (-)
G77349 NA non-coding upstream 80873 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 89565 13800013 ~ 13800912 (-)
G77351 NA non-coding upstream 94035 13804483 ~ 13804892 (-)
G77352 NA non-coding upstream 94641 13805089 ~ 13805329 (-)
G77378 NA non-coding upstream 276487 13986935 ~ 13987166 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other downstream 44821 13643184 ~ 13654413 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 155619 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 166170 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 910139 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 929817 12678990 ~ 12769417 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 95656 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 491814 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 493968 14204416 ~ 14208006 (-)
G77443 NA other upstream 524058 14234506 ~ 14264322 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other upstream 629598 14340046 ~ 14343012 (-)

Expression


Co-expression Network