pigo (pigo,LOC107713385,LOC107686475,LOC107744133,LOC107687847)


Basic Information

Item Value
gene id pigo
gene name pigo,LOC107713385,LOC107686475,LOC107744133,LOC107687847
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5482765 ~ 5491729 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250909.1
ATCGTCAGGTTCACTGCGCATGTCAACGGAAGTGGAAACCGGGCTGCGAGATGaccaatattaaaacaaaaccgaCGTGCAATTAGGCGGCATGTCAGCGAGTGTAGGTCAGCATTGAGGATCTTATAACACCGCTGCCAGATGTCGGTGACCCTGCGGTGCTTCAGGCCTCCTGCAGCGGATGCGCGGACTACATTCACAAccttaaagagagagaggacgAACGCAGAGGAGCAAGAATGAGAAGACTTCCTGTCCTGGTCACCCTCATCTGGGTCTGCTCAGTGTTTTACACGGGCATCTTCCTGTTTGTGGGAGGCTTCCTCTTAGTCAGGTTGGAGGTCAACAGAACTAGCACCTGTGCAGACGTATTGTCTCCAGGAGCTCAGGTGAAGGGAGATTTCTGCCTGAGCGAACCGCGCTTTCGTAGGGCAGTGGTGCTGATCATCGACGCTCTGAAGGCCGACTTCACCCGCTATGACCCGGAGAACATGGCACCCAAACCATTTGAGAACAAGCTGCCGGTGTTGGATGAGATGGCATCTTCACGCCCCTCTCATGCCAGGCTCTACACCTTTCGGGCTGATCCGCCCACCACTACCATGCAGAGGATCAAAGGCTTTACCACAGGTTCCCTGCCCACATTCATTGACGTGGGGAACAACTTTGCATCCAACGCCATCCTGGAAGACAATCTAGTGCACCAGCTGGGCCAAGTGGgcaagaGAGTTGTGTTTATGGGGGATGACACATGGGTGAGTCTTTTCCCTAAGAAATTCCACAGATCACTGCCCTTCCCCTCCTTCAACGTGAAGGACTTACACACCGTTGACAACGGCATTCTCCAAAACATTTATCCTACCATGGAGGGTGATGACTGGGATGTGTTGATTGCTCACTTCCTGGGTGTGGATCACTGTGGGCACAGATTTGGCCCGGATCACCCTGCAATGGCTGAGAAACTCTCCCAGATGGATGGAGTTATCAGATCAGTGATAAAGCGTCTGAAGAACGACACCTTGTTGGTGGTCATGGGTGATCATGGAATGACAGACACTGGGGATCATGGTGGAGAGAGCCAGAAAGAGACAGATGCTGCTCTATTTCTCTACAGTTCCTCTCCCTTATTTCCAGCACCAGGCTCCCAGgtGGAACCAGAGGTAGTACCTCAGACTGATCTGGTGCCCACGCTAGCACTTTTGCTGGGAGTTCCCATTCCTTATAGCAGTGTGGGGCAGGTTCTTCTGCCACTTTTTCCTCAGAATGGCTCCCGGGGTGCACCTACAGGACTTAGCCAGGCTGAGGCGCTGTGGATTAATGTCAGACAGGTTAACCGCTTCTTGGAGACCTACTCTAACATGGCCAAAGACATCCCACCAGAGAGTCTGTCTCAGCTGCGGGCTGATTTCTCAAACATTTCCTCTCAATACTTAGCTGTTGTCCATAAGGGGCATCTTCCCTCTCCTGAGCTAGTCGTCTCAATGCAGAACTATCTGACAGCTGTCAGGGAGACTTGTAGAGCCTCCTGGGCCCGTTTCAACCCTTTCAAAATGGCTGCAGGGCTTTTAATCTTAGGAGTTGCCTGTATGCTCTGCTATGTCCTTTCTGAGTTGTCTCACGTAGTAATTCAGGAAAGCCTTCTGAAGTTGCCCATACTCTCAGGGTTGGCAGTAGGATTAGTAGTAGCTGCAGGTCAGCTGTTCTTAAAAGGATATTTGGAGCTCTCGTGGTGTGTGGGAGCTGCAGCACTTTCTTCTGAGGTTTTGTTTCTATGGAGAACTCGAGGACTTTCTCCAAAAGAGAGGTGGTCACCTTCTGGCTTTCTCACGGTGGCAATTCTGGTGCTTTTCCTGCGCTGTGCCTCCCTGCTCTCGGACAGCTATGTCATCTATGAGGGCAATGTGGTTACCTTCTTGCTCTTCACGTTGAGTGTATATGTTCCTCTCCGTCTAAACTGGGATGGACTCTTGGTGCCACTCCCCCCACCAGACACCCAGAAACCACTTCGGTTGCTCCCAGCAGTGCTGCCATCCTCAGTGGTTAGACGCCAGGCCACTATGTTGTTGGTTTGGTTGGGAGTGCTGGTTGGGTCACTCTATTTGTCCCTCTCCTTCCACAACTGCCGAGAGGAGCAGGGCACCTGCCAGCCCTCACCTTTTCTCTCCCCTCTTTCACGAGTACAGAACAGTCAACTGCGCAACCTCCACTATGTCCTCTCTGTTTTCTCACTGGCCTTGTGGGGGTACCTTCTACATCGCTGGCTTAGACATTACGGGAACCTCAACTGTACCAGCGTCACTGTGTTTTCGGCCTGCTTCCTCATACCCCTCTCTTGTGTTTGCATTGTGTTGCACTGGGCAGTGAGTGCCACCCCAGAGGACACCTTTAGGAATTTGTCTGAACTCATTGGCCTAGCTCAAGTGTTCCTACCTCGGGCCGCTTTCTGCCTGCTGGGCCTGGGTCTACTTCTGTTGTGGGCTGATCCCATGACAGTGTTCCTCAAGTCAAGGACTCCATTGAACTCTCGAGGAACATCCCTGCCACCCCCCAAGTACCGAGCCAGTACAGGAATCAGTCCGCAGGCTGAACTGCACCACCTCATACCACAGTTGTATCAGCGCATCCGACACTCGCTGGAAGATGGGGCCACGGAAAGTGGTGAAACGGACAGCAGGCCAGCAGTGGAGGCTTACGGGCTGGGTACAGTGTACTCTGCTCCATTGGTCCTGCTTTGTGGACTCCTGGGGTTGGTGCTACTGCTGCTCCATCCAGAGGGAATGGCTCTTGCCTTCCTGCTTCTCCTGCTGGAGGCCGGAGCCATGCTGCACATCCACGCCTGTAACGCCAACCTCTCCAGCCTGTACAAGCACTCCAATGGTTTCAGTGTGCCATGGGCTCCAGTGGTTTCATGGTCTCTGGCTGCTGCCCAGTTTTTCCATGCAACAGGACACCTGCCTACCTTTCCCTCTATCCAGTGGGGTGCTGCATTTGTGGGCTTTCCTCAAGGTCACATGGGTACTGCACTTCCTGCAACATTGGTGACCCTCAACACCTTTTCCTCTCACATTATCTTTGCAGTTGGTTGTCCTCTGCTGCTGTTCTGGCCTCTGGTGTGTGAGGTGCGTGGGACCCGATCTATGCGCTCAGCGGGATCGGAGGAAAGCGAGGATGCTGTCATGGAGATGAGACTGAGAGAGAACCCTCAGAAGTTCAGCTCGGGTCTCCTGCAGCTCGCTGCACGCTACCTCTTTGTGAATGGAGCGCAGGTTTTTGCATCGGTTTGTGCAGCAGCCATCCTCAGGAGACACCTCATGGTGTGGAAGGTGTTTGCACCCAAACTGATGTTTGAGGCATCGGGCTTCATCGTGGGCAGTGTTTTTGTCATACTGGGGGTTGCCATGGTTATGAGAGTGGACATATCAGTGAGCGGGTTATTTAAGAAACTCCTCCCTCAGAATTCCAGGTAGCACTGGCTACCCTGACCCTTTTCCTCCTACAAACCCAATCCAGAAGTCTTCAGAGATGTGCTGGTCATCCTCCTCAATTCCACTGCCAACCACACGAATGGAAACcagatttgttttgcatttgacTTTGGCTCTTTTGGACCAAAGAGGTCTAAAGCGTCTCCTCCTCATTTTCAAATACGTGAGAGAAGTCAATAAACGGAAGttgatattttataaaagctattttagaAGACTGCAACAGTCATTATGCTTTTGACAAGCTATTGAACTGTCGGCCTTTGTTGCTCTGCTGCCTTTGTATTGAAAACGAGAGAGAAAATGATCTTTGTGCATGCCTTTTTACTGCCATGTTCCACAAGGTCATTATAGAGACGATTATAAGTTATTATATTGAAGGGCTAGATGAAATCCACAGTGTTGCAATggtgtgaaaacaaaaaaccatgatgtttgaacatttaaagAGCCAGTTCAGATttaatgtaaattctgtcatttatttctacCCTCTTGTGGTTCCAAACCTCAAAGCTGTGATCTAGATGACCAAGCTGCTCCATACAATAATTGTGGGTTGGGACCAGGCACAATTGTGGTCACCATGCACATTCTTTgcatgaggggaaaaaaaaaagcagcttggATATTCCGCTATAGGTGTGCTGCAGCTGAATGTCCAAACCCCTCTTTTCCAAACTTTTTCGCGTTTTGCAGAAGAAaataagtcatacaggtttggtgtgtaaatgatgacgggttttttggtttttggttgaACTGCCGCTTTAAAACTACAAGTGCATGTTTGATGGTGTCAATGGATTGGAACTATTCtcctgctttttttatttatttatcattatttttaaagcttaaagaTTGTTTGATAACAGCTCATTCATGTTAATGTGTTGTACTGTCTATTCCCTAGCAATAACCACTCAAGCATCAGGGTTGAACCAATAACATGTTATATTCTGCACCGCTTGAAAggtatttttactattatttttacatttttttttcctcacctaGATAACCGGTCACTAGCTTTAACGGTTGCCTTGTTTGATGTTAGTGAATGAAATTTGTCTTCATTCAATTTTCGTtgactgttatttatttagctgtCATATTTAGTTCACTAATGGATTAAATGACTTGTATGATCTCATTTTTGTGAGAAATGCATGGGGAAGATAATTACATCATGTGCTCAGGTTAATTTAGCCATAATGCAATAGAAGTATTCTGTTCTGCATGGtgcatttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgaggggatgactttcttttttttttgagtttaagCAAAATACTGTCAAGCCATACCGTGGCTTTTAACGTCTTAATGTGTGGTTGATGATTGAGTTAGCTGtgaaagaaatcatttgaattgtcttaaaattgttttaattcattgaTAAAAGGGAGAagatcaattaaatattttctacacTTT

Function

symbol description
pigo Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PIGO (phosphatidylinositol glycan anchor biosynthesis class O).

NR:

description
GPI ethanolamine phosphate transferase 3

GO: NA

KEGG:

id description
K05288 PIGO; GPI ethanolamine phosphate transferase 3 subunit O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250909.1 True 4960 mRNA 0.48 11 5482765 5491729

Neighbor

gene id symbol gene type direction distance location
slc20a1b LOC107686476,LOC107744132,LOC107687859,LOC107713386,LOC107555522 coding upstream 5760 5464957 ~ 5477005 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524,LOC107687909 coding upstream 30810 5447331 ~ 5451955 (+)
kcnn2 si:dkey-76p7.5,kcnn2,LOC106564970,LOC107687918,LOC107686472,LOC107567448,LOC106563202 coding upstream 36329 5411683 ~ 5446436 (+)
sppl3 sppl3 coding upstream 125310 5333010 ~ 5357455 (+)
LOC122352997 LOC107711241,LOC107672456,LOC107588012,LOC107670466,LOC107757355,LOC107567234 coding upstream 415228 5058497 ~ 5067537 (+)
phf24 phf24,LOC107677982,LOC107713387,LOC107744162 coding downstream 27439 5519168 ~ 5545588 (+)
prkab1a prkab1a,prkab1,LOC107713388,LOC107555518,LOC103357303 coding downstream 56976 5548705 ~ 5553640 (+)
ppp2r2ab ppp2r2ab,LOC107744137,LOC107720666,LOC107678035,LOC107560523,LOC107687801 coding downstream 400874 5892603 ~ 5906876 (+)
bnip3lb bnip3lb,LOC107560522,LOC107678042,LOC107744138,LOC107687791,LOC107561399,LOC107720674 coding downstream 416284 5908013 ~ 5918050 (+)
dpysl2b dpysl2,dpysl2b,LOC107678023,LOC107560521,LOC107687778,LOC100705567,LOC108277094,LOC103362090,LOC108427246 coding downstream 429430 5921159 ~ 5942002 (+)
G75007 NA non-coding upstream 23904 5456371 ~ 5458861 (+)
G74992 NA non-coding upstream 96910 5383139 ~ 5385855 (+)
G74958 NA non-coding upstream 246810 5235599 ~ 5235955 (+)
G74914 NA non-coding upstream 374651 5107785 ~ 5108114 (+)
G74908 NA non-coding upstream 384201 5097644 ~ 5098564 (+)
G75067 NA non-coding downstream 71974 5563703 ~ 5638236 (+)
G75076 NA non-coding downstream 151160 5642889 ~ 5643101 (+)
G75077 NA non-coding downstream 151820 5643549 ~ 5643766 (+)
G75081 NA non-coding downstream 165630 5657359 ~ 5663075 (+)
G75083 NA non-coding downstream 171428 5663157 ~ 5722027 (+)
G74965 NA other upstream 223942 5256838 ~ 5258823 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other upstream 232628 5238279 ~ 5250137 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other upstream 359392 5116866 ~ 5123373 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other upstream 953763 4481267 ~ 4529002 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 1362318 4013034 ~ 4120447 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 6918 5498647 ~ 5500388 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other downstream 68922 5560651 ~ 5562085 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other downstream 569462 6061191 ~ 6089587 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other downstream 962336 6454065 ~ 6472107 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other downstream 1489763 6981492 ~ 6993621 (+)

Expression


Co-expression Network