pdzph1 (LOC107702580,LOC107670049,LOC107560411,LOC107558250,LOC107715841,LOC107706919,LOC107737152,LOC107579090)


Basic Information

Item Value
gene id pdzph1
gene name LOC107702580,LOC107670049,LOC107560411,LOC107558250,LOC107715841,LOC107706919,LOC107737152,LOC107579090
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3891642 ~ 3904123 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250920.1
agtGTTAGTTAATGGATGATGTCATCTGAAATAACAGTAAACAATgctttacagcatttattcatctatgttaatttctataataattaaacattttcagctTTGTAGTTTGAATGAATGAGCTATAGTTTGGATTGATTCACTGCTTCGTGAGTTTATGAATtaacaagaatactttttattattaattactactaatagttattcattcatttattattgaaCAAGAACACAGAAGATGAAATTGCCCATTGTTTCTATGATTTAGTGTACAGGACTGTAGAATGAGTCGGAGGAAGAGGAACAGTCGCAGGAGACGGAGTTCCAGCAGCAGTAAACAATGCATCTCTCCATATAATTTTCAAAGATACACTATGGTGGACACTGTGGAAGTTGCAGAGAAGGGAGAAACTGACTCTTTCTGTAAAGAGCATGAACTGTCAGTATCTGAAGATGAGAAGGAGACTGAGACACCAACCACAGACAAAGATAATGGACTTGAGAGTTGCGAAGATTTCTTCcaggacaaaaagaaaaatgacgGACAAAAGCCAAACTCAGAACCAGTAGATAGAGGTCCAGGGTTAAAAATCACACATTCTGTGACCATCGAACATTTTGGATTGTCTTCTCCGAGAGTTGTGTTTGAACGGTGCCACAAAGCAATGGTTAGCAGTGTGATAGCCGTCACAACCACTGAGATCAAGTGTGTGAGCCCAAATATGAAGCTTGAGATCAATGAATTCGTGACATCAGACGATTCGAATTTCAAGACAACCTTTATAATTGAAAACCACAGAGATGAAAGAGATGAGACTCATTTTACAACTGAAAAGCATCAAActccaaaaaacacacatgtcTATTCATGGAATCAACATGGAGCAgattacaaacaaaacatcagTGAGAATATCAGATACAAGGTTAGCATTGCAGAGCTGAATTCAGAGTCATCATCGGACGAACCCGAAGAAACTGCTTGCCGTAAAAGCTGCTGTAAAAACAACTACCGATGGGGAAGCACAGGTGGCCAAACGGACACAGATTTCACACTGGTTGATGGATCCTCCTGTTGTTCATCACCCTCTGATTTTTGGCAACAATCGAAACAGCGCTCACTGCCCAGCAGTCTCAGTAATGAGACATTGTGGGATATCCCTCCCCCTGACGAATTTGCTGATGAGAAGAGTAATGCACTGGATTTTCTTGCAGAAAATGTTGCATCTTGTCAGATCAGTTCAAGAGAAAGATTTGTTGACCACAACAACACTAATTGCACACAAACAGCATCGGATGTCAACTTGTGCAAAGAGTTCATGCGCCAGGATACGTTGGACAACAGGACAAATGAACCCCGGTGTGAATCCTCGAGTACTCACGAACATTTATTCATGAACCCAAGAGCTTCAATAAACAGATCTTCTTTCACTAAAAACTTCATCGACAATCACGAAAGGAAGACGCGCATGCGCAACAACAGCATCGCCACCCTAGAAAGCAAAACTCATCCTGCAGGCTACTTGGAAATTCCTCCCAAAAGACGAAAAACGTACCCGGGACTGACATATCAAATGAGTCAAGCCAGAGAAAGCATTCCCTCATACAGAGAATCGTTTTCTTCTGGTACACTGTCGTCATTTTTCATGCAGTCGCTTCCCTGTCAGGCAGAGAGGATGGGCAGATTTTACGTAGAAGATGAAAGACTTTGTCCAAATGGGAGCCGCAAATCTTCCAGTAGCAGCAGCTATAGACCAAGCTCCAGCTCCACAACTGGTCCCGACTCTTATATTCCCAAATTTAAAGCTTACAGCTTAACAAAGAACCCCTTCTATCCATCAAGGTCTGATGAGAGCCCAGAAGAAGTCTTCTTTAGAGGCGAACAATATCATGGGCCAGCAGAGCTGGATGAGATGGAGCAACCGAGCTCTGGTTTGATGCTCCTTGATGGTGCAGATCAAGATGGTGCACCTGAGCTGAATGAAGTCAATGAAAGTGGCTTTGATGAAGAGATGGTGGAGTTGGATGGGTCTATTTCTCCAGGTGACACCATGGAGAGACATCAAAGGGAGCTTCTTATTCATGTGATTCCACCTTCCCTGTGCAACTCTGAGGAACAAATTGATGAAGGATTACCCAACGGTGTCAAGCATAACATGTCTGATGGAGACAAAGTTGATGCTCCAAAGAAAAGAAGAGGTTCGGTAATGACAATAATTACTGGCGACTGTGAGCAGAGATTTCTGCAAGGCAACCATGTCTTCTCATTTGATGAGGTGCGTCAGAAAGATGCGTTGAGCCCTGTGAGTGAGTCTCCTAGTGCGTCTCCAGCCAGCATCACAGAAGTGGCGGAGGAGCTCCAGGATTCCTCACAGGCACGAAAAACCACAGTCTCTTCAAACAGTAAGCTAATCTTACATATGGACACATCCTCTCAAGAGCCTGGAGAAGTGCAACCAAATGATCCCCTGCGTAAAATAAGCACAGATGTCAATAGGACAAACaaactttataaaaatgacttgtcTGATCGGCAAACTGCCTCAAAAAATTCATTAGAGGTCAAAGAGCACCTCAGGCCTCCAACAGACTCCATTCATAAGGATTCAGAGGAGCATTCAGATCACTGGGCAAGGAGACGCAAGCTTTTCAAGGAAAGCAAACAACGCAGTTCTGCAGGAGGAAGTTCTATTACTAGCAATATCACAGAGGAATCAGACACATTGAACTCTGAGGACACTCGTTCAGTGGACATGTCAATGCGGGATATTGAGGACAGAGGATTTTACACAGAAACCTTTCACTCAGTATCATGGATATACCATGGAGATGAAGTTAACCAGAATGAACGTCTCAGTAGCTGTACTCGACCAGCAGCAATTCGTGAGCGGACGGTAAAAATCAGCAAAGGGATGGGCGAGTATCCCTGGGGATTCAGGATTCAGTTCTCCAAACCCATTGTGGTTACTGAGGTGGACACAAATGGAGCGGCGGAGGAGGCAGGCCTGCAGGTTGGAGACTATGTGCTGGCAGTAAATGGCACTGACGTCACTATGGTGCCACACTCAGAAGCAGCTGACCTTGCACGGCAAGGCCCAGACATTTTGACTCTGACTATTGGCTCGGATATCGGACGAATGCCGAACACTCCTCGACCAGCGTGCAGAGGTTACTTGCACAAGAGAACTCAGTCCAGTTTGCTGAAGGGCTGGAGAAAGAGGTGGTTTGTGCTCAGACACGACTGCTGCCTCTATTACTACAGAAACAAGCGCGATGAAGGGAAGAGCCGAGCTCTGTCTGTGGTGAGTCTGGAGGGGGCGCTTGTGGAGGCCGATAGCAGTTTAGGAAAGCCGTTTGTGTTCAGATGCCACCCTGTGTCTGGGAACCGAGTTTACTACTTGTGTGCCACATCAAACCAAGAGATGAAGAGGTGGCTGGAGGCTATGGGTAGAGCAGTTCATCCTATTACACAGAATCACGTGTGGGTGGATGTGACTCGGCACAACTCAAACCTGCCCCCTCTGGCAGTCAAGAACCCAGAATGCCTTGGGTTACTGCACCAGCTGGACAGAAGCAAGGACTCGTGGGTGCAGCATTACTGTGTGCTTAAAGACGGATGCCTATATTTCTACGCCAGCATTCGCTCAACCTGTGCAATAGGAGGAATCTACCTGCATGGCTACACAGTGAGGGACCAGCCAGTGGGATCCAGAAGATCTGCCATTGAGCTCAGACCTCCTTCTGAAGAGTTTAAAGTGTTCTTTCTCTGTGCAGAAAATGCAAACGAGAACAAACGATGGATTAGCGCAATAAAATCATCTACATCAAAATGGCTGCCATTGCATCAGGCAATTCAGGACTACATGAGTCGCCCATCAGAGGAAACAAGAATGTGACTACAGGCACAACCATGTGTTCAAACCATAGCGTGACGATCTCctaattttttcttaaaattagGTCTGTGAATTTCCAGTCATTGTGCGCGATAACAACTTAAGTTACCTAACTGTAACTTAGAGTTTATTAGAAGACTTCAGGCTAGTTTAATCATGACAGGTTAGTAGCTTGGGTCTTGGTGGACTACAAGAGCATCACTTCGTCCTCAAAAGTGACCAGGTTGATGATGGTGAAGCTCTTATGCCTAAATGGCTCTAATGCATAGCCTTACAGACGCATGACGCCAAATTAGCATTGTGTGCAATATCAGGAAGTTTAGCTGTACAGTGCTAAAACAAATCAGatcttttctgttttgatgtTGAACCGATCTTGCGTTTGGCTTTGACGTGCATTTGCTTATTTaccaaaaactaaacaaaaaattgaTAATCGAGAGGTGTGGATACAAACAAAGCTAACAATTTAACAAATTGAAATTACAATGATCAAATCGTCTAGTGTAAATATTCATAATGAAAcctaaaataagtaataataataatttccaaGTGCTTTTTTGACAGTGCAGCAGTATCAAGTGCATGAAGTTGTCATGGCAACCTGTGCAGTGAAGGCAGCTGGAAGCATAGAAATATAGGTAGAAACCTCAGAGTCAcatcaaactcttttttttaaattctctcagtctttcattttaaattatgcttaTTTTAGGTCCACTTAACCATTCTGATGTTGCATGTTTCTTTGCATTCAGACGAGAGGTTAAGAAAGAAATACATCTGTGAATACATCTGCTAATTATGTAAAGACACTGCCATTATTATTGCATATAGCAcacattttctttaaggccaGTTCTTTCAGACCTTTAGTCCTCTTAAAATAGGATGCAGTGAAGTATTTAAATTCTTGTTTTAGCTCAATTTATAGCATTATTATGACTTCTTTGTATAACTAATgacacatttatgtttttttttgtattaatatttgtattagtaTGGATGTTCTTCCAGTTTACAgtttataagatttttttacaaCCTACAGTGAGGGAACATTTATACTTGgtcacttcatttatttgaattcattacATTAATCGTTCATTTATGTGGGCTGAACAGCAGATTCATTACACTTGGCTGAAATGCACTTCAGATTGCATTCACCTAATGACTGAATAACTATCTGACCTGTAAAACACAGGTAGTGACCAAGTGTAAATATCCTCTAATGATTTCCCTAGAATTGGATGTAGTCTGTTCATTTAAGTGCTTGTATTGCATGTAAATAGCCAATGAAGCTTGCCAAAATACAGACTTGCATTATGTTCTACCTCA

Function

NR:

description
uncharacterized protein LOC110523156

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250920.1 True 5249 mRNA 0.42 12 3891642 3904123

Neighbor

gene id symbol gene type direction distance location
pam pam,LOC107737006,LOC107670040,LOC107560403,LOC107715844,LOC107702561 coding downstream 12122 3843692 ~ 3879520 (-)
sec31a LOC107715884,LOC107702588 coding downstream 227761 3644069 ~ 3663881 (-)
tmem150c tmem150c,LOC107558260 coding downstream 265859 3617515 ~ 3625783 (-)
hnrnpdl hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490 coding downstream 279359 3607967 ~ 3612283 (-)
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding downstream 296821 3590267 ~ 3594821 (-)
ca9 LOC107568649,LOC107715873,LOC107670029,LOC107737123,LOC107572190,LOC107702555 coding upstream 201885 4106008 ~ 4115776 (-)
dcp2 dcp2,LOC107702577,LOC107670035,LOC107564107 coding upstream 215255 4119378 ~ 4126532 (-)
chd1 chd1,LOC107665465,LOC107670034 coding upstream 227619 4131742 ~ 4153288 (-)
macir zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107715868,LOC107670048,LOC107564120 coding upstream 251281 4155404 ~ 4164114 (-)
ppip5k2 ppip5k2 coding upstream 262899 4167022 ~ 4201388 (-)
G74614 LOC107715880,LOC107702582,LOC107558262,LOC107560412,LOC107670041,LOC107737037 non-coding downstream 57272 3780059 ~ 3834370 (-)
G74615 NA non-coding downstream 59550 3831602 ~ 3832092 (-)
G74624 NA non-coding downstream 63614 3827125 ~ 3828028 (-)
G74609 NA non-coding downstream 67046 3821391 ~ 3824596 (-)
G74574 NA non-coding downstream 190873 3699605 ~ 3700769 (-)
G74739 map3k1,LOC107670047,LOC107737160,LOC107702559,LOC107715839,LOC107558252 non-coding upstream 88064 3992187 ~ 3993434 (-)
G74742 NA non-coding upstream 93778 3997901 ~ 3999787 (-)
G74737 NA non-coding upstream 103107 4007230 ~ 4009374 (-)
G74769 LOC108276716,LOC108427282,LOC107102752 non-coding upstream 177453 4081576 ~ 4532236 (-)
G74770 NA non-coding upstream 181630 4085753 ~ 4535082 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 283854 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 513858 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 1124447 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1694213 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 2044740 1774223 ~ 1846902 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1491 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 1115184 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 2633999 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 2724302 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 3273201 7177324 ~ 7180821 (-)

Expression


Co-expression Network