npm1a (LOC107678029,LOC107720694,LOC107552000)


Basic Information

Item Value
gene id npm1a
gene name LOC107678029,LOC107720694,LOC107552000
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7484402 ~ 7487356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250951.1
CAGGAAGACCGTCCCACTAATGGGCGTGGCGTACTCAATGTGGGTTAGTGTGTCCACCCCGCACGCTTCAGtctacacacattcacatagCCTACAGAGATGGATCTCGAACAAATGGGTCCCCAAACCTTCTTGTACGgttgTGAGCTCAAGGCCGGCAAGGACGTCACTTTTAATCcagaggatgatgatgattacGATCATCAGTTATCAGTCAGAATGGCCTGCGTTGATCCCTCAACAAAAGACGAACTGAACGTTGTGGAGATCGAAGGGCACGATTCAGAGGGTCAGAAAGTCAAAGCAGTCCTGGCCACACTCAAGCCTTCCACTCTCCCCAGTGTGTGTTTGGGTGGGTTTGAGATCACTCCGCCTGTTGTGTTCCGCCTGCGCTCTGGCTCCGGTCCAGTTCACATTAGTGGACAGCATCTCGTCATCATGGGAGGCGACCAGTCTtttgatgaagaggaggaggaagaggaagaagaggaggagacgTTGACGGCTAAGAAGAGGCCAGGGCCTGTGACTCAGAAGCCTTCGaaaaaaatgaagttggatgaagaggatgatgatgatgatgacgacgaaGATGAagatgaagatgaggaggatgatgatgaggaggaggaggaaattGAGGAAAAGACTCCTGTAAAGAAAAAGGCGGCACCGTCCAAAAAACAAACCCCTGCACAGAACGGAAAAGGACCCGCGCCTAATACGCCCGCTAAAGAACAGAACAAGACTCCTGAAAAGAAGAATAAGAAGAACAAGAAGCCACAGACACCTAAAACACCAGAGGTTTTGACCGTCCCAGAGATCAAAGCCAAGATTATGGCAAGAATGGAGAAGGGTGTATCATTGCCATATATATAGCCAAAGTTTGAGAacttcatatatgtat

Function

NR:

description
nucleophosmin-like, partial

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250951.1 True 907 mRNA 0.49 9 7484402 7487356

Neighbor

gene id symbol gene type direction distance location
kcnip1b kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032 coding upstream 949 7450917 ~ 7483453 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding upstream 97408 7381076 ~ 7386994 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding upstream 112469 7362680 ~ 7371933 (+)
cbln17 LOC107720595,LOC107677995 coding upstream 121864 7361078 ~ 7362538 (+)
LOC122353122 pcdh1g33,LOC107720701,LOC103911742,LOC107677963 coding upstream 175745 7305710 ~ 7308657 (+)
LOC122352927 NA coding downstream 45832 7533188 ~ 7538271 (+)
nlgn2b nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341 coding downstream 128048 7615404 ~ 7681744 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding downstream 207960 7695316 ~ 7708220 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding downstream 221817 7709173 ~ 7747396 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding downstream 294832 7782188 ~ 7810083 (+)
G75516 NA non-coding upstream 76281 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 84369 7399428 ~ 7400033 (+)
G75513 NA non-coding upstream 85039 7398045 ~ 7399363 (+)
G75498 NA non-coding upstream 117797 7365417 ~ 7366605 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 724757 6734932 ~ 6759645 (+)
G75502 NA non-coding downstream 119 7487475 ~ 7488567 (+)
G75574 NA non-coding downstream 194798 7682154 ~ 7682440 (+)
G75583 NA non-coding downstream 319005 7806361 ~ 7834899 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding downstream 353242 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding downstream 357863 7845219 ~ 7849236 (+)
G75496 LOC107720595,LOC107677995 other upstream 119071 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 144207 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 321179 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 333821 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 490781 6981492 ~ 6993621 (+)
si:ch211-237l4.6 NA other downstream 330454 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 373890 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 374237 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 374604 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 385183 7872539 ~ 7880100 (+)

Expression


Co-expression Network