lim2.1 (lim2.1,LOC107579014,LOC107589671,LOC105028969,LOC105900331)


Basic Information

Item Value
gene id lim2.1
gene name lim2.1,LOC107579014,LOC107589671,LOC105028969,LOC105900331
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11786410 ~ 11787673 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250981.1
ATGTACAGCTTCATGGGAGGAGGGCTGTTTTGTGCAGGAGTGGGCAATATACTCCTGATTGTTTCCACAGCAACAGATTATTGGATGCAGTACCGTCATTCAAACAACTACATGCATCAGGGGCTGTGGAGATACTGCATGCCCGGGAAATGCTTCACACACACCGACAGCATTGCATACTGGGATGCTACACGAGCGTTCATGATCTTGTCTCTGTTGGCCTGCTTTATTGGCATCATCATCGGTATCATGGCGTTCATCCACTACTCATCCTTTGACAGGTTTGACAAAACCTTTGCTGCAGGCATTCTGTTCTTCATCTCATgcttttttgtgtttctggcCATGGCTGTGTACACTGGAGTTACAATAAATTACTATGGTAAACGCTACGGTAACTGGAGGTTCTCCTGGTCTTACATCATTGGCTGGGTGTCTGTTGTGCTCACTTTCTTTTCAGgaaTGTTCTACATGTGTGCATACCGGATGCACGAATGCCCCAGAATGTCAAATCCTCACTAG

Function

symbol description
lim2.1 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

NR:

description
lens fiber membrane intrinsic protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250981.1 True 522 mRNA 0.46 4 11786410 11787673

Neighbor

gene id symbol gene type direction distance location
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding downstream 2257 11781496 ~ 11784153 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399 coding downstream 32209 11749965 ~ 11754201 (-)
LOC122352762 hist2h2l,zgc:194989,LOC107719244,LOC108277172,LOC107667924,LOC103356012,LOC107574861 coding downstream 38353 11747207 ~ 11748057 (-)
si:ch73-261i21.5 LOC107588542,LOC107693981,LOC107747005,LOC107578992,LOC107691696,LOC107751407 coding downstream 41852 11731123 ~ 11744558 (-)
vps11 vps11,LOC107744603,LOC107691631,LOC107588528,LOC107693978,LOC107747034 coding downstream 66765 11713900 ~ 11719645 (-)
opcml opcml,LOC107746995,LOC107588660,LOC107686109,LOC107691701,LOC107751394,LOC107577150 coding upstream 278258 12065931 ~ 12186096 (-)
LOC122352422 pknox2,LOC107686111,LOC107691639,LOC107747045,LOC107686209,LOC107751409 coding upstream 429417 12217090 ~ 12283587 (-)
robo3 robo3,LOC107577175,LOC107751391,LOC107589390 coding upstream 523517 12311190 ~ 12430879 (-)
fez1 fez1,LOC107691643,LOC107751387 coding upstream 703997 12491670 ~ 12500849 (-)
vps26bl v26bl,LOC107588734,LOC107751386,LOC107691644,LOC108423787,LOC105024202 coding upstream 717339 12505012 ~ 12509908 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding downstream 20200 11701871 ~ 11766210 (-)
G76693 NA non-coding downstream 299982 11485906 ~ 11486428 (-)
G76657 NA non-coding downstream 495570 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding downstream 550720 11234372 ~ 11235690 (-)
G76642 NA non-coding downstream 675575 11096963 ~ 11110835 (-)
LOC122353234 NA non-coding upstream 660869 12448542 ~ 12453651 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 817546 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 890694 12678367 ~ 12678625 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding upstream 1008991 12796664 ~ 12880735 (-)
G77153 NA non-coding upstream 1233980 13021653 ~ 13103059 (-)
ccdc83 NA other downstream 201450 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 579158 11176569 ~ 11207252 (-)
G76625 NA other downstream 747679 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 802672 10972881 ~ 10983738 (-)
G76498 NA other downstream 1306221 10478059 ~ 10480189 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 891317 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 994680 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 1704600 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 1750483 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 1855511 13643184 ~ 13654413 (-)

Expression


Co-expression Network