CI01000000_13152692_13175605 (PDGFC)


Basic Information

Item Value
gene id CI01000000_13152692_13175605
gene name PDGFC
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 13151625 ~ 13175605 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_13152692_13175605.mRNA
GAGTGCATGAGTCTCAACACGAGAAGCTCATCAGTGTCACTGGGGATGGAATTATTCAAAGTCCTGACTTCCCCAACACATATCCCCGGAATACAGTTATAGCGTGGCGGCTGGTGGCAGTCACAGAAAGTTCCAGGATCCAGCTGACCTTTGATCCGCGCTTTGGCCTGGAGGACGCCGAGGACGGCATTTGCAAGTATGATTACGTGGAGGTGAAGGAACCTGTTGGAGGGATAGTGTTGGGTCGTTGGTGTGGCTCACAGATGGTTCCAGGGCCCCAGGTATCCAAGGGGAACCAGCTCCTGATCCGCTTCGTCTCTGATGAATACTTTCCCTCAGACCCTGGATTCTGCATCCATTACACTTTGCTTCATCAGTGCTGTATTATTGCAGAGGAGGTGGTTGTGTTATGGCTGGTTTCTGGACACAGAGCTCGCATCAGAGAAGGTGTGGCTGAATCGAGCTCTATTTTTAGTGTTTGTGGAGGAGGATGTCAAGCTGGAACCTACAATTCCAATACTGACTCCTCCAGCCCTGACTCACAGTGCATAGTTTTTGTTTTCCTCCTGCTCACCAAACAGCTTGTGGACGAGAGTTGCATTTTGAGCGTTGCCTGCATAAAGTGTTCGAAATATTGTGTTGTCGTGAAATTTCAGGAACTACTGGAAACCCGGGATCACGGGGGCAGCTCTACACTTTGTTTAAACAAGCAATCACTCCCCTTCACCACTTTCACAGAGAGAAGGGGGAAAATAAGCCCCAGCTGCGATTCTCAGGAAGAGATTTGGGGAACTGGTAAGGGTTTGAGGGAAGAGAGGCAGTCGGAGCCCGAGGCCCCTGCAGTGATGCCTGCGTGGATGCAGAGTGTGGATGTTCTGAGTGAAGCTGTAGCTGGTTTCAGCACAATGGAGGAAGTGATGAAATACCTGGAGCCGGAACGCTGGCAGGTAGACATGGAGGACCTCTACAAGCCTACCTGGCAGGTGGTGGGCAAATCGTTCTTCCATCAAAAGAAATCCAGAGGAGTGGTGGACCTGAACCTGCTTCGTGAGGAGGTGCAGCTTTACAGTTGCACTCCACGGAACTTTTCTGTCTCAGTGCGTGAGGAACTGAAAAGGACGGACGCCATCTTCTGGCCCAGCTGCCTGCTGGTGAAGCGCTGTGGAGGGAACTGCGCATGCTGCTCTCTCAACTGCTATGATTGCCAGTGCTCGCCTACCAAGGTGGCCAAAAAATATCATGAGGTTCTGATGCTGAAGCACAGGGCAGGGGGTCGGGGACTGCAAAAGACTCTAACGGATGTCCCCCTGGAGCACCATGAGGAGTGTAGCTGTGTCTGTAAAAATGACTCAGACTAAAGCAGTCTCAGCGAGAGAGATCTACACTGGCCCCCCACAGACTCACCCAGGGAAATATTTCTTGCTTTGTGCATAAATGTGTTTTTACTCTGACGTTGCAAACTAATGAAACCCAGCGCTGGATATCTTTTTATCTTGACTTATCTAAGCCTGCGGTTCCATTCGTTTTGGGCTCTCAAATCCATAAACAATTGACCAATGAAGAAGTTTCCATTGGCCCTATGATAGCATGGAGTATTTGCAGGAAAATTGGACACGGTCTCTTTTTTTTTTTTTTCCTTTGAGTGTTTGAGTGCATGTATAGAGCTGTGCGGGTTAAGGAAATGAGGTATTCCAGGATAACTAGAGAGCCTAAAGTGAGGTTGCTATTACTTGGGGGAACAAATGGATCTGCTGTGTTCTTTTACATATATTTTTCTCTACTTATTTTTTTATGACTTAAATATCAAGGACCTTGCCTATGCATCCACTTTCAGCGATCCATGGACATTTTTGAGGTGCCGTGGACATTCTCCTCAATAGCATCCAAAAGAAATTGATCACACGGTCATAAACCAGCACTGCATCGCCTACTCATCAATGAATTCAAATTAGACATTTTCATTAATATTTCATAAAGAATATTCCAGGATGTCCCTCTTTTTTAAACCAGAGCTGAGGAGTCATGTCTGCATTTTTTGCTCATTTCCTAAGAACTATAGACTCTTATGAGAATGACTCCATTCAAGAGAGAACACTAAAATACAAAAGTGAATCTTGTGTAAATACATTTCAAATTGTGATTTGTTGACACTTCCTATGTCATTACTGTTTTTGGTACGAAAATTTTGGCATGTAAGAATCATTTTTCCCCTTTCATAATCACTGTAGTATTTTCAGTATTAGTCACTCTTTTGTAGAGACATTCATACATTTATTGTGTTTTTTTGAATAGTTCTATTTGAGTAATAAGGTGGTTATTTTGACTGGAGACAATATTCTGAAAACTGTTAGATGTTCATGTAAATAGACTTTTTAGAAGTTAAAGGGACATAGAACTGCCAGTAACATATTCCTCTACCATTAAA

Function

symbol description
pdgfc Predicted to enable growth factor activity and platelet-derived growth factor receptor binding activity. Predicted to act upstream of or within several processes, including embryonic organ development; platelet-derived growth factor receptor signaling pathway; and positive regulation of cell division. Predicted to be located in extracellular region and membrane. Is expressed in mouth and otic vesicle. Orthologous to human PDGFC (platelet derived growth factor C).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG:

id description
K05450 PDGFC_D; platelet derived growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_13152692_13175605.mRNA True 2425 mRNA 0.45 7 13151625 13175605

Neighbor

gene id symbol gene type direction distance location
CI01000000_13117207_13118382 MRPL18 coding downstream 33243 13115994 ~ 13118382 (-)
CI01000000_13087976_13097052 SRPX2 coding downstream 52424 13087588 ~ 13099201 (-)
CI01000000_13069375_13070057 RNASEH2C coding downstream 81551 13069205 ~ 13070074 (-)
CI01000000_13061811_13064265 LSM11 coding downstream 87344 13061186 ~ 13064281 (-)
CI01000000_13041021_13043707 NA coding downstream 106995 13040969 ~ 13044630 (-)
CI01000000_13350939_13358816 FAM198B coding upstream 174351 13349956 ~ 13358816 (-)
CI01000000_13360123_13365788 TMEM144 coding upstream 184518 13360123 ~ 13365788 (-)
CI01000000_13587788_13588280 NA coding upstream 411798 13587403 ~ 13588280 (-)
CI01000000_13599770_13622506 NA coding upstream 424165 13599380 ~ 13622506 (-)
CI01000000_13625996_13633130 LRIT3, LRIT3A coding upstream 450108 13625713 ~ 13633130 (-)
G8641 NA non-coding downstream 8125 13143287 ~ 13143500 (-)
G8624 NA non-coding downstream 30676 13120750 ~ 13120949 (-)
G8618 NA non-coding downstream 57660 13048401 ~ 13093965 (-)
G8515 NA non-coding downstream 298064 12811878 ~ 12853561 (-)
G8672 NA non-coding upstream 37769 13213374 ~ 13213579 (-)
G8689 NA non-coding upstream 74858 13250463 ~ 13333884 (-)
G8690 NA non-coding upstream 76127 13251732 ~ 13251991 (-)
G8699 NA non-coding upstream 96980 13272585 ~ 13311429 (-)
G8731 NA non-coding upstream 193294 13368899 ~ 13375019 (-)
G8125 NA other downstream 2110716 11040269 ~ 11040909 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other downstream 2324030 10824324 ~ 10825464 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 2737112 10407395 ~ 10409950 (-)
G3931 NA other downstream 6748100 6157013 ~ 6403525 (-)
G3716 NA other downstream 7150856 6000407 ~ 6000769 (-)
G9036 NA other upstream 551195 13726800 ~ 13727090 (-)
G9602 NA other upstream 1165397 14341002 ~ 14346534 (-)
CI01000000_14200000_14436182 TENM2 other upstream 1209752 14200000 ~ 14436253 (-)
G10672 NA other upstream 3050682 16226287 ~ 16231126 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location