LOC122353125 (LOC107677985,LOC107720701,LOC107687322,LOC107586138)


Basic Information

Item Value
gene id LOC122353125
gene name LOC107677985,LOC107720701,LOC107687322,LOC107586138
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7292612 ~ 7295200 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251040.1
ATAATTCAGATAGGGGTGCTACATAACAGACAGCCATCAGATTTATCTCCAGATTCTTTAACGCGAACGAAGACGCAATTTGTTGGAAACATATTTATTCGCATTTGTTGCGATTTTTGAATGCTTCTGTTCCGTCTTTGATGATCAAAAATGGAGTCGGGAGGAAAAGGCTGGCATTATGGGTCTCTATTCTTCTATACAGCGTGCGCGTTGGCTTTATTTCCCCCTCGCGTGACTGGACAGATCCGTTATTCTATACCTGAGGAAATGCAAGTGGGTTCGTTTGTTGGAAATATTGCCTCGGACCTCGGGCTTGAGCCGAAGAGACTGGTTTCAGGAAAAGCGCGTGTTTTCACCGCAGACAGCAGGGAGTACATCGGACTGGACAAGGAGAATGGACATCTggttgttaaaaacaaaatagacaGAGAAGAGCTATGCGGAGAGATTTCTGCCTGTAGTGTGAGTTTTGATGTTATTCTAGAGAATCCGATGGAGCTTTATCGAGTTACTGTTGATATTCAGGACATCAATGATAACAGCCCAGTCTTTCCCAAATCTAAAATCGAGCAAGAAATTAGCGAATTAGCTGTTTTAGGTGCGAGATTTCCATTAGAGAGCGCAATAGACCCAGATGTTGGAGTGAACTCGCTACAGAAATATACTCTTCAACCCACCGATCATTTTAAGCTAAATGTTCAGAGTGGTGGGGGTAACAAAAACGTCGAGATGGTTCTTCATTCTCCTCTcgacagagaaaaaaagcagcGTCATAATTTGATTCTGACGGCTTTCGATGGTGGAAAACCACAAAGATCTGCAACTGTGCAGATTAATATTATTGTTCTAGATGTCAATGATAATGCGCCTGTGTTTAGCCAATCGTCTTATAAAACCTCCGTTGTTGAAAATGCTCCTAAAAGCACAATCGTGACTACAGTCAGTGCGAGCGATGCAGACGAGTCTAGTCACGGCGTTCAGTATTATTTTGAGCACGCGACATCTACCGTGAAAGCTTTGTTCTCTATTGATGCGGATACTGGGGAGGTTAAAGTCATAGGAGATATAgattatgaaaaacataaacagtTTACAGTCAAAGCCAAAGCTAAAGATCACGGAGGTCTGACTGACTTGACTGAGATTATTATTGATGTAATTGACGTAAATGACAACGcaccaaaaattacaataatgtcTTTTTCCAGTTCAGTATCTGAAGATGCAGCACCTGGAACTGTTATAGCAATGATAAATGTTCAGGATCTAGATTCAGGTGACAACAGTAAGATTACATGTTCAATTGATTTAAACTCTCCATTTAAAATCGTATCCTCATTAACTAATTATTACAATCTGGTGACAGACTCAGAACTAGACAGAGAACAAACAGCAGAGTATAACATCACTATAACTGCTGTAGATGGAGGAAACCCACCTCTTTCAAGTAAAGAAATTTTAACCCTAAAGATATCTGATGTGAATGACCACGCACCTCAGTTTGAGCAGGACTCATATAATGCCTTCATCGCTGAAAATAACCCTCAGTCTACAACTATTCTGACTGTTAAAGCAATCGACATGGACTGGGGGCAAAATGCAAagatttcatattttcttaTTAATGGAGATCTGAACGGAGCACCTCTGGCATCTTACATCTCCATAAATTCAGAAAGTGGAGTGATCTATGCAGAAAAATCATTTGATTATGAACAGCTGAAATCATTCAAAATGCAAGTCAAAGCTCAAGACGGGGGCTCACCCCCTTTATCCAACAACGTgactgtaaatattataatccAAGATCAGAACGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGTTCTTCTGTGGTGGCTGAGATTGTGCCTCGTGCTGCAGATGTTGGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCCTATAAACTACAGAAAGCTCCAGACAGAGCGCTGTTTGAAGTGGgtttacagaatggagaaataagAACTGTGCGACAAGTGACTGATAAAGATGCCGTCAAACAAAAACTGACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTAGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACTCACGAAAAACAGTATAACGACAATTTGACGTTTTATTTAATCTTGGCTCTCGCAGTGGTCTCCCTGCTCTTCATAGTCTCTATTATTTCCataatttcagttaaaatcTACAGATGGAGGCAgaataagatattttataaatctaGTGCAAATCTACCTGTAATCCCGTATTACCCTCCAGTCATGAGCGGCACATTACAGCACGTGTATAATTATGAAATGTGCGGGACTACTGATTCAAGGATGAGTGACATGAAGTTTGTCAGGCCTTACAGTCAGAACACACTGGTGAGCCAGAGTCGCATGGGAACAGTTCAGAGAGAAAAGAAGGAGCAGGAGGTCGATGACCTGACTTTAGAGGTGAGACCTTGACTGATGTTTTAATATCATCTCACCAtcagatt

Function

NR:

description
PREDICTED: protocadherin gamma-A5-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K16495 PCDHGA; protocadherin gamma subfamily A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251040.1 True 2585 mRNA 0.42 3 7292612 7295200

Neighbor

gene id symbol gene type direction distance location
LOC122353126 LOC107586138,LOC107677986,LOC107687322 coding upstream 131 7289342 ~ 7292481 (+)
LOC122353131 pcdh1gb9,LOC107552066 coding upstream 10980 7278859 ~ 7281632 (+)
LOC122353132 pcdh1gb9,LOC107586138,LOC107677986,LOC107687322 coding upstream 14801 7275305 ~ 7277811 (+)
LOC122353134 pcdh1g9,LOC107720701,LOC107688268,LOC108276785 coding upstream 50557 7240323 ~ 7242055 (+)
LOC122353123 pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304 coding upstream 85082 7204157 ~ 7207530 (+)
LOC122353122 pcdh1g33,LOC107720701,LOC103911742,LOC107677963 coding downstream 10510 7305710 ~ 7308657 (+)
cbln17 LOC107720595,LOC107677995 coding downstream 65878 7361078 ~ 7362538 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding downstream 67480 7362680 ~ 7371933 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding downstream 85876 7381076 ~ 7386994 (+)
kcnip1b kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032 coding downstream 155717 7450917 ~ 7483453 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 532967 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 636702 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 712683 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 748367 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 1102172 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 70217 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 102845 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 104228 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 106933 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 192275 7487475 ~ 7488567 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 129389 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 142031 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 298991 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 820505 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 1203025 6061191 ~ 6089587 (+)
G75496 LOC107720595,LOC107677995 other downstream 65784 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 522610 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 566046 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 566393 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 566760 7861960 ~ 7862033 (+)

Expression


Co-expression Network