LOC122353126 (LOC107586138,LOC107677986,LOC107687322)


Basic Information

Item Value
gene id LOC122353126
gene name LOC107586138,LOC107677986,LOC107687322
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7289342 ~ 7292481 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251041.1
CAGATCGCTCAGTACTGTCGAATGCCTTGAAACGAACGCGAGATTTCTACTTACTATGATTGAAGGAGCTTGAATTCACTCTTTTGCATTTACAAGGCGGCTCTTTGAAATCGTTGAGAACATTTTTGTCTGTGGTTTGTCGGTGATATCAAGGGAAAAAATGCCTGGAGTCGTGATGTGGCACTCGGTATTGTTTTTCTTCGTCCTGCTTTATTCGGCGCGAGGACAGGTCAGTTACTCCATTCCAGAAGAAATGGCTAAAGGCTCTACTGTGGGAAATATCGCGCAGGATTTGGGTTTGGATTTAAAAAGACTAAAGTCAGGAAAAGCGCGCATATATACAGGCGACAGTACTGAATATATCGGTCTCAATAAAGACACTGGCTTGCTGCTCATCAGAGAGAAAATGGATCGCGAGTCTCTTTGTGCAAAAACGACGCCGTGCGCTCTGCACCTTCAGATGATTTTGGACAACCCGATGGAATTATATACGATTACGGTAGAAATTACGGATATAAACGATAATCCACCCACTTTTCAGAAAAAGAGAATTGAGTTTGAGATCAGCGAATCTGCTGTAACGGGCGCGAGATTCTTGCTGGAGGGAGCTGTGGATGCTGATGTAGGAATAAATGATCTTCAGAGCTATTCTCTTAAACCTACTGATAATTTTATCCTTGAACTGCACAGTCAGTCAGACGGTGACAAAAACGTCGAAATGATTTTGCAAAGACCGCTGGATAGAGAAAAGAAAGGAGTGGTTACGTTATTGCTAACCGCTTTTGACGGCGGTGATCCGCAGTTATCTGGAACTGTTCAAATACATGTGACTGTGTTAGATGTTAATGATAATGCTCCTGTGTTTACGCAGAAAGCATATAAAGCTATTTTGACTGAAAATGCCGCGAAGGGGTTTAAACTTACCACTGTAAGTGCCACTGATGCGGACGAAGGACCGAATGGTCTTGTGACATACTACGTTGCAAGCAAAGATGATATTGTgcgaaatatgttttttgttgatCAGCATAGCGGCGAGGTTACTTTAAATGGCCTGGCTGACTTTGAAAAGGCAAGTCACTATCAGATTGACATCCAGGCTAAAGATCAAGGGGGGCTTTCTGATTCGTGTAAGTTAATTATTGATGTGCTAGACATTAATGATAACAAGCCAGTGATAAGTTTACTTTCTATGTCAAACTCTGTGTCTGAAGACTCCACACCTGGCACAGTTGTTGCTATGATGAAAGTAGATGATGCAGACTCAGGTGTGAACGGACAGATTCACTgcattataaaagaaaatattccaTTTGCTCTTACATCACCATCCAGTAATTTTATCAGCCTGCGTATAGAGCAGCAACTggatagagaaagagaagctGAATATAATATCAGTGTCACATGCTCTGATCAGGGGGTGCCTGCTCTCTCCAGCAGCGCTTTTCTGTCTTTACAAATATCAGATGTGAATGACAATGCTCCTGTCTTTGAGAAGAGTCACTATGAGGCGTCTGTGCTGGAGAATAACACACCTGGTCTCTCTATATTTACAGTTAAAGCCAGTGACTCTGATTGGAATCAGAATGCCCGTGTTTCTTATATTCTAGAAGACAGCTCTGTTAATGGAGTCTCTGTCTCATCATATGTGTCAGTTCATCCTGACAGTGGACTGATTACAGCTGTGCGCTCTTTTGACTATGAACAGCTGAAGGATTTCCACTTCCGGGTAAAAGCACAAGATGGAGGCTCTCCTCCGCTCAGCAGTAACGTGACagtgaaaataattattcaagATCAGAACGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGTTCTTCTGTGGTGGCTGAGATTGTGCCTCGTGCTGCAGATGTTGGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCCTATAAACTACAGAAAGCTCCAGACAGAGCGCTGTTTGAAGTGGGTTTACAGAATGGAGAAGTAAGAACTGTGCGACAAGTGACTGATAAAGATGCCGTCAAACAAAAACTGACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTAGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACTCACGAAAAACAGTATAACGACAATTTGACGTTTTATTTAATCTTGGCTCTTGCAGTGGTCTCCCTGCTCTTCATAGTATCAATAATTTCCATAATTTCAGTCAAAATCTACAGATGGAGGCAgaataagatattttataaatctgGTGCAAATCTACCTGTAATCCCGTATTACCCTCCAGTCATGAGCGGCACATTACAGCACGTGTATAATTATGAAATGTGCGGGACTACTGATTCAAGGATGAGTGACATGAAGTTTGTCAGGCCTTACAGTCAGAACACACTGGTGAGCCAGAGTCGCATGGGAACAGTTCAGAGAGAAAAGAAGGAGCAGGAGGTCGATGACCTGACTTTAGAGGTGAGACCGTGACTGTTTTTTCTAATGGATTCAATATATTGGTGTACTTCTATGATATGTGTGTCAGACCTTGATACCAAGTCATAATTGTTGTCCTCTCTAGTTTAAATGCAGTTTCTATGTATAGATAGTCTAACAATTGTATACAATTTTGACTCATGGATCCAAGTATTTAGACATTtgtcacaattaaaaaattaactgTCTTATAAGGCAATATATCAAAACAACTTCACAAACACACCTCtcaatcaaacatttaaaatgttgttttttagttgtaaataaataacgaTCAGTCATCttaaaatgaaagacaaaatgtaatacaattgATTCTGTGAAGTATGCTAGCATACGTTTGCTTGGTTTACTTCATTGCTCAgacaaattttaaattaaaaagtatattttatgttgtataaatattaaattgtggTGTATCAAGTTATGCACATTTTGTcatgtaatatgcatttatttgctaaaaaggtgttttatgcatactttatatttttacacatagTCTTACAAGTTGTGTGCATATAGAACTGATTACTGTTTaggatatttaattgtaaaaagaataaatgtgtaaaattgtA

Function

NR:

description
PREDICTED: protocadherin beta-16-like isoform X10

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251041.1 True 3138 mRNA 0.40 2 7289342 7292481

Neighbor

gene id symbol gene type direction distance location
LOC122353131 pcdh1gb9,LOC107552066 coding upstream 7710 7278859 ~ 7281632 (+)
LOC122353132 pcdh1gb9,LOC107586138,LOC107677986,LOC107687322 coding upstream 11531 7275305 ~ 7277811 (+)
LOC122353134 pcdh1g9,LOC107720701,LOC107688268,LOC108276785 coding upstream 47287 7240323 ~ 7242055 (+)
LOC122353123 pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304 coding upstream 81812 7204157 ~ 7207530 (+)
LOC122353116 pcdh1a6,pcdh1a3,pcdh1a4,LOC107678002,LOC107742395,LOC107677970,LOC107742396,LOC107742371,LOC107552069,LOC107687386,LOC107586137,LOC108437806 coding upstream 92938 7163272 ~ 7196404 (+)
LOC122353125 LOC107677985,LOC107720701,LOC107687322,LOC107586138 coding downstream 131 7292612 ~ 7295200 (+)
LOC122353122 pcdh1g33,LOC107720701,LOC103911742,LOC107677963 coding downstream 13229 7305710 ~ 7308657 (+)
cbln17 LOC107720595,LOC107677995 coding downstream 68597 7361078 ~ 7362538 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding downstream 70199 7362680 ~ 7371933 (+)
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding downstream 88595 7381076 ~ 7386994 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 529697 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 633432 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 709413 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 745097 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 1098902 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 72936 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 105564 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 106947 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 109652 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 194994 7487475 ~ 7488567 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 126119 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 138761 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 295721 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 817235 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 1199755 6061191 ~ 6089587 (+)
G75496 LOC107720595,LOC107677995 other downstream 68503 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 525329 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 568765 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 569112 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 569479 7861960 ~ 7862033 (+)

Expression


Co-expression Network