pitpnab (pitpnab,LOC107556875,LOC107684996,LOC107720580,LOC107701111,LOC107592159,LOC108410689,LOC103045464,LOC108237022)


Basic Information

Item Value
gene id pitpnab
gene name pitpnab,LOC107556875,LOC107684996,LOC107720580,LOC107701111,LOC107592159,LOC108410689,LOC103045464,LOC108237022
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9245950 ~ 9265990 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251050.1
CCTCGGCCCTGATCAGGAAGTGAATCTGTGGGAAATAGAAAAACGGTCCCTAGAATGACATAGAAGCGGGTGAGGTGGGGTAGACCGAGACACCGGGACTAACGCAGGACTCGACACCTATTCGGATTCATCCGGGTGCAAAACCACGTTACCTTCGGAAGGCACAAAGCACCGGGGAAAATGCTGATTAAAGAATTTCGAGTGATCCTACCGATTTCTGTGGAGGAGTATCAGGTCGGGCAGCTGTACTCCGTAGCGGAGGCCAGTAAGAACGAGACGGGTGGAGGAGAGGGTGTGGAGGTGTTGAAGAATGAACCCTATGAGAAGGATGGAGAGAAGggacagtacacacacaaaatctacCACCTGCAGAGTAAAGTCCCGTCATTTGTACGAATGCTTGCACCAGCATCAGCGCTGAACATTCACGAGAAAGCTTGGAACGCCTACCCATACTGCcgcacagTAATTACTAATGAGTATATGAAAGAAAACTTCCTCATCAAGATCGAGACGTGGCACAAACCCGACATGGGACAGCAGGATAATGTTCACGGTCTAGACCCAGACACCTGGAAGAAGGTGGACGTGGTGTACATAGACATAGCAGACCGAAGTCAGGTGGAGCCAAAGGACTATAAACCAGAGGAAGACCCCACCAAGTATAAGTCTGTAAAGACCGGAAGAGGGCCGCTTGGTCCAGATTGGAAGAAAGAGCTACCTAAAAAGACAGACTGCCCACACATGTGTGCCTACAAACTGGTTACTGTCAAGTTCAAGTGGTGGGGCCTGCAAAACAAAGTGgaaaactttattcaaaagCAAGAGAAGCGTTTGTTCACTAATTTCCACCGGCAGCTGTTCTGTTGGATTGATAAATGGATCGAGCTGAACATGGACGACATCCGCAGAATGGAGGAAGAGACCAGGAAGGAACTGGATGAGATGAGAGTGAAGGATCCAGTCAAAGGCATGGTGGCTCTTGAAGATTGAAGCTGCTCTGTATTCCTGGATGCTGCTGTTCATAAAGATCAGACCTGAACTACTGGAGACCAGCAGCATCCCTCCcctcattcaaatcaaagcaacATGTCTTTTTAATCGTAATCAAAGTCCTTCATCCAGCCCTTTTGGTGGCTGTTTGTCCTGAGCATCCTCCATATCCTCCTTTCAGTCTGACAGTGGAGCACATTGACTAGTTACTTAGGCTATTATACCGGTTCTAACGTCATGCCCAGTTTATTAAGTCTACCTACCTTAACTACAGAGACGATCAGCAGTTCGTCATTTATGATGTCAGATCATTACCTTAATATCTGGAGCCCGGCAGAATTGTGTTTTAAGATGAGTTTAATGTAAAGCAGAtgatatttgtgtgtatatatatatattcagaatatCTATTGGCAGTGGAATTATTGTGACAGATGTATAAACAGGGTTTATAAGTAACTGttcttctatttcttttttcttttttttgcggACCAAGCCagtttgaatcattttgtttcaatctgtagtgatttgtttttgttgctgtatgttttaatttcattttaccCACTTTTGAACCTATTTACCAGCTGATCCGAGGTGGAAGTGTGTCTCTTTATAGTGTAGTACTGTACAATCACAGTCGTGTCATCCTgaccattcatttatttgtaacacGCATCATGGACTGCAAGTACGGCgcaaatttaaatgcaaaacacagaGTTTATTATAATAAGCTGATCGAACAGTATCACGTTTTTGAAGTAAGCTGAAGTTAAAAGTATTGCTGTTTGTTAATCGGTCAATATTAATGGTTTCATTGTCATTTCTTCCACAGTTTCCTTGCGTGTGCTATTTTAgtcaattcatttatttatttttataaaaaataaaaaaaaaggtgtacaGTAGTTTCCCACCCTCCGTTGTTTTTGATTGGTTTACAAGTTCAGGCTCCGCCCTTTTCTGTCTTTGAAAGAACTTGAAGAGGCGACGTTAAACCTTTCAGTCTTTCATAAAAGGTTTATTACTaagatataataattttttttcccctgactATTTAGTCGCTTCCAGATGAGGTGCTCAAGAAGGATATTTTACGTTGTgcgcatattttatatatgtataaattcatttttgtttcaccTCCTTTCCACTTTATTGAAGGATTGATTATCGCACTTCCCCTTTTATAACTTGTCTTGAGGATAAAGACATTTATCCAGATATTAGCAATAATACCTCCTTTCACAAACCCTTCCAGTCGACATACATGATGTGAGATAGTGACTTTAGAAGTGTAGACATTCCCTCTCAGAATGTTGCGTCATTAGGactttaatacaaatatactcTCACTTCCAATCGCTCCTAGTTTTATTGATATGGAATTGGGCAAGGAAGGTGAAATGGGTTGAGTATGGGTTTTTAAATCAGTCTTTTCTTAGTAACGTGATGTGTGTATGGATGTATGTGCGTTTGAAGTTTTCAGTGTTTCCTGTTTTCGCGTGAGGGACATCCGACATGTAACTAAAATGGAGGTTTACACCCCTGTGTTTCTTTCCGCCAATGCTCAGGATCCATTGATGCACACCTAAATTCACTCTGACAAGAGTTAATTATTCTTGTAGAATTATGTCGAATTCCTTGAAATTCGTGGAAATTCCATTGAATTCTTAAGAGATGAATGCAGGTTTTATGGTGTAGATTGCGCGTGTTAAAACATCTCTACCGTCATAATACAACCACCAATACACCAGAACTGTGTTGGTCCTGAGTCTAATCAAAGTGATGTATGgatgtatgttttaaattgtatatagtatataaatatatgtagatgaacacataaatatatatataactatataaatatagctCAGACTATCCTGCCAGGCTATCAGCACATACAGCCATTCCATCAACCCAACCATTATATCTAGTGGTTTAGTAATGGCTGGGTGTTATCTGTGGATAAAGTTACTGGAATGTGGCAAATTATGGTGGTTTTGAGCTATTGATTTGAACTGTCTCTAAAGGAACTCTCAGATAACTCCGCCCATCACTGTCACTGGCCCCGCCCTTCATCCCCGGCCGCTCCTCTTTGGCAGGATGGTGTCTAAATATGTTTCCATTCATCgattgttgttgtatttttgccGTGAGCTGTAGAAATCTCTCACTTTTAAATTCCTTTCAAAGCTTACACTGTGAACGAAGCCACGACCTTTGAACTTGAGTAAAGACCCTTTCGGTGGAGGCGGGGGTTTGGACTAGTTTGCCATTCATCTCTCAGGAGACTCGATTGAAACTTTTCCAAGCCGGTGTTTGAATGACAGACAGGTGGCTTATAAAAGGGAACTACCCACATGAACTGATCACCACAGTTTGTGTTACCATTATGTAAGGCAGATCATGGTAAACAGGACTTTCTCATAGATACGTTGTTGTTAGATTTCACGATTTGTTGTCGAAAATTAAAACCCAATGATTctagaaatatgaaaaaaaaaaatgttttatgaatttgtttCACCCTACCCtgtcatgtcatgtttttttttatttcttttactgtGAATTTGTGCCTTTTGTCATCTTATCTTCCAATAAAACTACATTGgagatgtgaaaaaataaataaacttttaaaaagta

Function

symbol description
pitpnab Predicted to enable phospholipid binding activity and phospholipid transporter activity. Predicted to act upstream of or within phospholipid transport. Predicted to be active in cytoplasm. Orthologous to human PITPNA (phosphatidylinositol transfer protein alpha).

NR:

description
PREDICTED: phosphatidylinositol transfer protein alpha isoform

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251050.1 True 3660 mRNA 0.40 12 9245950 9265990

Neighbor

gene id symbol gene type direction distance location
inpp5kb LOC107556871,LOC107720665,LOC107718714,LOC107592158,LOC107701109 coding downstream 1288 9235910 ~ 9244662 (-)
LOC122352888 pcyox1,LOC107562568,LOC107686458,LOC107713365,LOC107569400,LOC107688072,LOC106564891 coding downstream 666197 8574262 ~ 8579753 (-)
LOC122352897 LOC107569402,LOC107688131,LOC107686449,LOC107744108,LOC107713359 coding downstream 705981 8531873 ~ 8539969 (-)
LOC122352883 inpp5j,LOC107686450,LOC107562581,LOC107688649,LOC107744151,LOC107569389 coding downstream 727959 8498472 ~ 8517991 (-)
mat2aa mat2aa,LOC107688110,LOC107686452,LOC107569395,LOC107744110,LOC107713361,LOC106580346 coding downstream 749717 8489265 ~ 8496233 (-)
slc43a2b slc43a2b,LOC107684998,LOC107556870,LOC107720664,LOC107701113 coding upstream 824 9266814 ~ 9277561 (-)
hephl1b LOC107720546,LOC107685013,LOC107556850 coding upstream 11712 9277702 ~ 9288615 (-)
stoml3b stoml3b,LOC107556874,LOC107685018,LOC107720596,LOC107701117,LOC103043838,LOC108444492,LOC108277281 coding upstream 129490 9395480 ~ 9399654 (-)
proser1 LOC107720660,LOC107718719,LOC107685002,LOC107701116 coding upstream 134350 9400340 ~ 9407799 (-)
fgl1b si:ch211-287a12.9,LOC107556872,LOC107720659,LOC107685008 coding upstream 156955 9422945 ~ 9425337 (-)
G75970 NA non-coding downstream 115630 9129886 ~ 9130320 (-)
LOC122352914 NA non-coding downstream 358592 8887004 ~ 8887358 (-)
G75871 NA non-coding downstream 985683 8230688 ~ 8260267 (-)
G75868 NA non-coding downstream 1024085 8214662 ~ 8221865 (-)
G75767 NA non-coding downstream 1080242 8165448 ~ 8165708 (-)
LOC122352752 NA non-coding upstream 41978 9307968 ~ 9310228 (-)
G76042 NA non-coding upstream 56609 9322599 ~ 9325478 (-)
G76112 NA non-coding upstream 304441 9570431 ~ 9572283 (-)
G76213 LOC107557212,LOC107693892,LOC107718792 non-coding upstream 394701 9660691 ~ 9663782 (-)
LOC122352922 NA non-coding upstream 429848 9695838 ~ 9697388 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other downstream 213461 8002361 ~ 9032489 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other downstream 689862 8543097 ~ 8556088 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other downstream 718503 8519666 ~ 8527447 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other downstream 849551 8318889 ~ 8396399 (-)
G75863 NA other downstream 960032 8173349 ~ 8285918 (-)
G76068 NA other upstream 161972 9427962 ~ 9429800 (-)
cd209 NA other upstream 223340 9489330 ~ 9510430 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other upstream 306382 9572372 ~ 9625405 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other upstream 1001364 10267354 ~ 10283665 (-)
G76438 NA other upstream 1114106 10380096 ~ 10383309 (-)

Expression


Co-expression Network