sptlc1 (sptlc1,LOC107715883,LOC107720388,LOC107702586,LOC107683465,LOC107560407)


Basic Information

Item Value
gene id sptlc1
gene name sptlc1,LOC107715883,LOC107720388,LOC107702586,LOC107683465,LOC107560407
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3697541 ~ 3708314 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251083.1
cgcgcggtcACGTGACTCAGTCAAAATGGCGTCGGGGCAACAGTGGGTGTTGGTAGAGATGGTGCAAGCTTTTTACGAGgCACCAGCATATCATTTGATTTTAGAAGGTATCCTCATTTTATGGATTATCAGACTGCTGTTTTCcaaaacatataaacttcaggAAAGATCAGACCTCACAGAAAAGGAGAAAGAGGAGTTGATTGAGGAGTGGCAGCCTGAGCCGCTGGTTCCCCCCGTATCTAAAGACCACCCTTCCCTTAATTATGATGTAGTCACTGGgcCTCCAAGCCACAAAATCATTGTAAATGGGAAAGAGTGCATTAACTTTGCCTCATTTAACTTCCTGGGTCTGCTCGACAACGAGCGCGTAAAGttgAAGGCATTGTCGTCGCTAAAAAAATACGGTGTGGGAACATGTGGACCAAGAGGCTTCTATGGGACCTTCGATGTTCATCTGGAGTTGGAGGAGCGATTGGCGAAGTTCATGAGAACAGAGGAAGCCATTATCTACTCGTACGGCTTCGCCACCATCGCCAGTGCCATTCCAGCATACTCCAAGAGAGGAGACATCATCTTTGTCGACGAGGCGGCGTGTTTCTCCATTCAGAAAGGCTTGCAGGCTTCACGCAGCTTCATCAAATACTTCAAACACAACGATATGGAGGATCTTGAGCGCCTCCTGAAGGAGCAGGAGATTGAAGATCAGAAGAATCCACGTAAGGCGAAAGTAATCCGGCGGTTCATTGTCGTTGAGGGACTCTATATCAACACTGCAGATCTCTGTCCACTGCCTGAACTGgtaaaACTGAAGTACAAATATAAAGTGCGAATCTTTCTAGAGGAGAGCATGTCATTCGGAGTGCTTGGAGAACATGGAAGAGGAGTCACGGAGCATTTTGGGGTCAACattgATGATATTGACCTCATCAGCGCCAACATGGAGAATGCGCTGGCGTCCATCGGAGGTTTCTGCTGTGGGCGATCATTCGTTATCGATCATCAGCGTCTGTCAGGTCAGGGTTACTGTTTCTCAGCGTCTCTTCCACCTATGCTGGCTGCTGCTGCTATCGAAGCCCTCAACATCATGGAAGAAGATCTaggccTTTTCAGGGTGTTACAGGATAAGTGCAAACATGTCCACAAAGCACTACAGGGGACTCCAGGGCTGAAGGTCGTCGGGGAGCCTTTAGCTCCTGCTCTTCACCTGCAGCTGGAAAACAGCACTGGATCCAGAACAAATGACCTGAAGCTGCTCCGAGCAATTGTCGATTACAGTTTGGAAAGACGGATCGCACTCACTTTGGCTCGATACCTGGACAAAGAAGAGCGTTTCCTTCCACCTCCAAGCATCAGAATCGTGGTGACCGTCGAGCAGACGCAGGACGAGATGGAGAAAGCAGCGCAGTGCATTCGAGAAGCAGCAGCGAAGATCCTGATATGACGAGCACAAAGCATTAAACGTGAGATCAGACGTGACGTGAGAGCCATTGCGCCTGATGGTTcgatgacctttgaccctgaAGACCTCGAATGGATGGATACACCGATTGAACctgtttgtattgtatttatgttgTCCATACCTGCTGTACAGATAATGTTGATTACTTTAGTCTTCATTTCACATTGAAATAAACGCAGCGCTGGTTCTTCCCGCTGCTTGGAGTCGGTGTGCACCATCAAACCTATTTATGTCTCGGATAATGATGGGAGATCTTGACTAATCAACAATAAatatgccatttaaaaaaaaaaaaaagaattattttataaaaagtaatttttatatacactaaTATTTACATTCCTTTGTTACCTTTGACCAAAGAGTTGCTTCTTTACACTTGAAAATCGTTTCACAGTCTTTATGCACTGTATATGAGTTTGTTTGTGATTCATATATTCTGAATAATGCGGttattttgactgttttggTAACTCGTGCACTGTGAATGCACTGGGTCAGGAGTGTTGAATTCGGTCTGGTTTTGAATCtgtcatttttgtcaaattgtaatttttttttttttaaatcaatttcaaGAATAAAAGACCTTTCAGCCTTTAAA

Function

symbol description
sptlc1 Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 1A. Orthologous to human SPTLC1 (serine palmitoyltransferase long chain base subunit 1).

NR:

description
serine palmitoyltransferase 1

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251083.1 True 2072 mRNA 0.45 16 3697541 3708314

Neighbor

gene id symbol gene type direction distance location
carm1l LOC107702592,LOC107715849,LOC107679043,LOC107573847 coding upstream 56680 3627167 ~ 3640861 (+)
LOC122352579 LOC107702598,LOC107715893,LOC107653494,LOC107732273 coding upstream 129044 3496746 ~ 3568497 (+)
LOC122352557 plppr1,LOC107750956,LOC107653496,LOC107702599,LOC107710008,LOC102776600 coding upstream 241754 3413925 ~ 3455787 (+)
LOC122352986 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 coding upstream 389191 3271890 ~ 3308350 (+)
LOC122352595 grin3a,LOC107710005,LOC107750958,LOC107653477,LOC107702562 coding upstream 536271 3144873 ~ 3161270 (+)
ror2 ror2,LOC107702585,LOC107683466 coding downstream 1352 3709666 ~ 3767673 (+)
nfil3 LOC107702584,LOC107558263,LOC107715881,LOC107720386,LOC107560408 coding downstream 60440 3768754 ~ 3772710 (+)
auh auh,LOC107720385 coding downstream 65196 3773510 ~ 3790180 (+)
ankrd55 ankrd55,LOC107702571,LOC107670032,LOC107737049 coding downstream 99700 3808014 ~ 3818485 (+)
il6st LOC107715880 coding downstream 113023 3821337 ~ 3834370 (+)
LOC122353153 NA non-coding upstream 109647 3587363 ~ 3587894 (+)
G74392 NA non-coding upstream 916224 2780642 ~ 2781317 (+)
G74389 NA non-coding upstream 980784 2716522 ~ 2716757 (+)
G74388 NA non-coding upstream 981249 2715379 ~ 2716292 (+)
G74387 NA non-coding upstream 982190 2715056 ~ 2715351 (+)
G74585 NA non-coding downstream 59887 3768201 ~ 3768652 (+)
G74589 NA non-coding downstream 80443 3788757 ~ 3844512 (+)
G74596 LOC107715844 non-coding downstream 146002 3854316 ~ 3858952 (+)
G74626 NA non-coding downstream 183577 3891891 ~ 3893020 (+)
G74667 NA non-coding downstream 412550 4120864 ~ 4122658 (+)
cdc42se2 cdc42se2 other upstream 2945 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 29535 3663912 ~ 3668006 (+)
enoph1 enoph1,LOC107702573,LOC107715850,LOC107679042,LOC107731803 other upstream 80025 3588244 ~ 3617516 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 93325 3596606 ~ 3604216 (+)
lyrm7 lyrm7,LOC107732862,LOC107715852 other upstream 107430 3588418 ~ 3590111 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other downstream 304720 4013034 ~ 4120447 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 772953 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 1408552 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 1529965 5238279 ~ 5250137 (+)
G74965 NA other downstream 1548524 5256838 ~ 5258823 (+)

Expression


Co-expression Network