prkab1a (prkab1a,prkab1,LOC107713388,LOC107555518,LOC103357303)


Basic Information

Item Value
gene id prkab1a
gene name prkab1a,prkab1,LOC107713388,LOC107555518,LOC103357303
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5548705 ~ 5553640 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251088.1
TTGAAGTCGGCGGTGGGCGGAGTGGATGCGAGGATGTTGAGTTTATGACGATAAGCAacgtgaattaaaaaaaagaaaaatgacgaAATATCTGTGATCTGGGGCAAGTAGCGGTCGCGAATTCATACGGCACTGCGCAAATataATTTTAAGCTCAGCCAGCTGGCCGCTCACACTGTGTGACCTCTGGAAAGGCTTGTCAGGAGCACTATGGGGAACACAAGCAGTGAGAGGGCCGGCATGGGCCAGGAAAAGGCCCACAGGAGGGATAGTCGAGGAACCAAGGAAGGAGACCGTCCTAAAATCCTGATGGACAGCCCAGAGGATGCTGATATTTTTCACGGCGAGGACATCAAAGCACCATTAGAAAAAGAGGAGTTCATTGAGTGGAGACCAGACCTGGAGACCAGCGAAAAGGTCGACGCTTTAGATCGACCCACTGTATTTCGGTGGACAGGAGCTGGAAGAGAAGTCTATATTTCGGGCTCTTTTAATAATTGGACCAATAAGATTCCTTTGATAAGGAGTCAAAACAACTTTGTGGCGATTGTGGATTTGCCTGAGGGTGAGCACCAGTATAAATTCTTTGTGGATGGACAGTGGACCCATGACCCAACAGAGcCTGTGGTGACCAACCAGCTCGGCACGGTCAACAACATCATCCAGGTGAAGAAGACGGACTTTGAGGTGTTCGACGCGCTCATGGTGGATTCACAGAAATGTTCTGACATGTCAGACCTGTCCAGCTCTCCTCCTGGGCCGTACCATCAGGACGCTTATGTACCTAAACAGGAGGAGAAGTTCAAATCTCCACCCATTCTGCCTCCACATCTCCTGCAGGTCATCTTAAATAAGGACACGGGCATCTCTTGCGATCCAGCTCTGCTCCCTGAGCCCAATCACGTCATGCTTAATCATCTCTACGCTCTCTCCATTAAGGACGGTGTTATGGTCCTGAGCGCCACGCATCGGTACAAGAAGAAATATGTCACAACTCTGCTGTACAAACCGATCTGAGAGACATGGCCATCTCAACACTCAACTCACGCGACCTCCGTCTGATTTGGCTGTTTTATATAGTACGTACTACTGTAAATAGAAATGTACAGAGATGCACTTTATAGGCAAATCCCACCTTAAGGGGTATAAACTAAGCATACACGTAGTATTAGCTCTGGACAGTTAAGCACATATCTGCTCTTTTAGAGGTTGGTACAGTTTTAAATCCTGGGCCAAATCAGTTGTGTTCTTGAATAGTGTAAATAAAGCgtgaatttaatgtttaaataattatatgtgtgtgtgtagataaatattaatataaatggcCAGTTTTTTGGGGGGCCAAATATAAAGAGTGTTTAAGAGACTGCGATTTACTTGAGAAACTGATtccattttattagatttttttttggaaaaagattGTAATGTCTGTTAtgttctgcatttttattagaacGGAACTTTATGTAACTCTTAATATCCGTTACGGtgatttgaaattatttgaagTTGTTACTTTGAATAAACGATTCACCCGATTTTAAGTTTTATTCGAATGTATCGTATTAACAGTCCTTGGGCCTTCAAAAGTGATTCGAAAATCATCTTGATGTTTTGAAATCCTTGCGATATGCGCAAGTTGACCGTTATATCGTCCTTGATTGTTTATATTGTGGCATAATAATGGATCTGTCATTGTTAGAAGTGATAGAGCTCCTGTAATTCACCTGAGAGTGTCTGAAAAGTACAAAAATCGACGTATTTGCGCACTTCAGGTTGTCAAACAGTAGAAGATCCACTGAAACGACctcaaaatctaattaaaattaatttctgcacAGAAAAGTGAAGTTA
>XM_043251089.1
GTGGGCGGAGTGGATGCGAGGATGTTGAGTTTATGACGATAAGCAacgtgaattaaaaaaaagaaaaatgacgaAATATCTGTGATCTGGGGCAAGTAGCGGTCGCGAATTCATACGGCACTGCGCAAATACTGATTGGAGTCTGAAGatgaaatacaaagaaaaagaaaataacgaataATTTTAAGCTCAGCCAGCTGGCCGCTCACACTGTGTGACCTCTGGAAAGGCTTGTCAGGAGCACTATGGGGAACACAAGCAGTGAGAGGGCCGGCATGGGCCAGGAAAAGGCCCACAGGAGGGATAGTCGAGGAACCAAGGAAGGAGACCGTCCTAAAATCCTGATGGACAGCCCAGAGGATGCTGATATTTTTCACGGCGAGGACATCAAAGCACCATTAGAAAAAGAGGAGTTCATTGAGTGGAGACCAGACCTGGAGACCAGCGAAAAGGTCGACGCTTTAGATCGACCCACTGTATTTCGGTGGACAGGAGCTGGAAGAGAAGTCTATATTTCGGGCTCTTTTAATAATTGGACCAATAAGATTCCTTTGATAAGGAGTCAAAACAACTTTGTGGCGATTGTGGATTTGCCTGAGGGTGAGCACCAGTATAAATTCTTTGTGGATGGACAGTGGACCCATGACCCAACAGAGcCTGTGGTGACCAACCAGCTCGGCACGGTCAACAACATCATCCAGGTGAAGAAGACGGACTTTGAGGTGTTCGACGCGCTCATGGTGGATTCACAGAAATGTTCTGACATGTCAGACCTGTCCAGCTCTCCTCCTGGGCCGTACCATCAGGACGCTTATGTACCTAAACAGGAGGAGAAGTTCAAATCTCCACCCATTCTGCCTCCACATCTCCTGCAGGTCATCTTAAATAAGGACACGGGCATCTCTTGCGATCCAGCTCTGCTCCCTGAGCCCAATCACGTCATGCTTAATCATCTCTACGCTCTCTCCATTAAGGACGGTGTTATGGTCCTGAGCGCCACGCATCGGTACAAGAAGAAATATGTCACAACTCTGCTGTACAAACCGATCTGAGAGACATGGCCATCTCAACACTCAACTCACGCGACCTCCGTCTGATTTGGCTGTTTTATATAGTACGTACTACTGTAAATAGAAATGTACAGAGATGCACTTTATAGGCAAATCCCACCTTAAGGGGTATAAACTAAGCATACACGTAGTATTAGCTCTGGACAGTTAAGCACATATCTGCTCTTTTAGAGGTTGGTACAGTTTTAAATCCTGGGCCAAATCAGTTGTGTTCTTGAATAGTGTAAATAAAGCgtgaatttaatgtttaaataattatatgtgtgtgtgtagataaatattaatataaatggcCAGTTTTTTGGGGGGCCAAATATAAAGAGTGTTTAAGAGACTGCGATTTACTTGAGAAACTGATtccattttattagatttttttttggaaaaagattGTAATGTCTGTTAtgttctgcatttttattagaacGGAACTTTATGTAACTCTTAATATCCGTTACGGtgatttgaaattatttgaagTTGTTACTTTGAATAAACGATTCACCCGATTTTAAGTTTTATTCGAATGTATCGTATTAACAGTCCTTGGGCCTTCAAAAGTGATTCGAAAATCATCTTGATGTTTTGAAATCCTTGCGATATGCGCAAGTTGACCGTTATATCGTCCTTGATTGTTTATATTGTGGCATAATAATGGATCTGTCATTGTTAGAAGTGATAGAGCTCCTGTAATTCACCTGAGAGTGTCTGAAAAGTACAAAAATCGACGTATTTGCGCACTTCAGGTTGTCAAACAGTAGAAGATCCACTGAAACGACctcaaaatctaattaaaattaatttctgcacAGAAAAGTGAAGTTA
>XM_043251090.1
GGGCGGAGTGGATGCGAGGATGTTGAGTTTATGACGATAAGCAacgtgaattaaaaaaaagaaaaatgacgaAATATCTGTGATCTGGGGCAAGTAGCGGTCGCGAATTCATACGGCACTGCGCAAATGCCAGACTGATTGGAGTCTGAAGatgaaatacaaagaaaaagaaaataacgaataATTTTAAGCTCAGCCAGCTGGCCGCTCACACTGTGTGACCTCTGGAAAGGCTTGTCAGGAGCACTATGGGGAACACAAGCAGTGAGAGGGCCGGCATGGGCCAGGAAAAGGCCCACAGGAGGGATAGTCGAGGAACCAAGGAAGGAGACCGTCCTAAAATCCTGATGGACAGCCCAGAGGATGCTGATATTTTTCACGGCGAGGACATCAAAGCACCATTAGAAAAAGAGGAGTTCATTGAGTGGAGACCAGACCTGGAGACCAGCGAAAAGGTCGACGCTTTAGATCGACCCACTGTATTTCGGTGGACAGGAGCTGGAAGAGAAGTCTATATTTCGGGCTCTTTTAATAATTGGACCAATAAGATTCCTTTGATAAGGAGTCAAAACAACTTTGTGGCGATTGTGGATTTGCCTGAGGGTGAGCACCAGTATAAATTCTTTGTGGATGGACAGTGGACCCATGACCCAACAGAGcCTGTGGTGACCAACCAGCTCGGCACGGTCAACAACATCATCCAGGTGAAGAAGACGGACTTTGAGGTGTTCGACGCGCTCATGGTGGATTCACAGAAATGTTCTGACATGTCAGACCTGTCCAGCTCTCCTCCTGGGCCGTACCATCAGGACGCTTATGTACCTAAACAGGAGGAGAAGTTCAAATCTCCACCCATTCTGCCTCCACATCTCCTGCAGGTCATCTTAAATAAGGACACGGGCATCTCTTGCGATCCAGCTCTGCTCCCTGAGCCCAATCACGTCATGCTTAATCATCTCTACGCTCTCTCCATTAAGGACGGTGTTATGGTCCTGAGCGCCACGCATCGGTACAAGAAGAAATATGTCACAACTCTGCTGTACAAACCGATCTGAGAGACATGGCCATCTCAACACTCAACTCACGCGACCTCCGTCTGATTTGGCTGTTTTATATAGTACGTACTACTGTAAATAGAAATGTACAGAGATGCACTTTATAGGCAAATCCCACCTTAAGGGGTATAAACTAAGCATACACGTAGTATTAGCTCTGGACAGTTAAGCACATATCTGCTCTTTTAGAGGTTGGTACAGTTTTAAATCCTGGGCCAAATCAGTTGTGTTCTTGAATAGTGTAAATAAAGCgtgaatttaatgtttaaataattatatgtgtgtgtgtagataaatattaatataaatggcCAGTTTTTTGGGGGGCCAAATATAAAGAGTGTTTAAGAGACTGCGATTTACTTGAGAAACTGATtccattttattagatttttttttggaaaaagattGTAATGTCTGTTAtgttctgcatttttattagaacGGAACTTTATGTAACTCTTAATATCCGTTACGGtgatttgaaattatttgaagTTGTTACTTTGAATAAACGATTCACCCGATTTTAAGTTTTATTCGAATGTATCGTATTAACAGTCCTTGGGCCTTCAAAAGTGATTCGAAAATCATCTTGATGTTTTGAAATCCTTGCGATATGCGCAAGTTGACCGTTATATCGTCCTTGATTGTTTATATTGTGGCATAATAATGGATCTGTCATTGTTAGAAGTGATAGAGCTCCTGTAATTCACCTGAGAGTGTCTGAAAAGTACAAAAATCGACGTATTTGCGCACTTCAGGTTGTCAAACAGTAGAAGATCCACTGAAACGACctcaaaatctaattaaaattaatttctgcacAGAAAAGTGAAGTTA

Function

symbol description
prkab1a Predicted to enable protein kinase binding activity. Predicted to be involved in regulation of primary metabolic process and signal transduction. Predicted to act upstream of or within fatty acid biosynthetic process; phosphorylation; and regulation of catalytic activity. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1).
prkab1 Enables protein kinase activity. Involved in positive regulation of gene expression and protein phosphorylation. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of nucleotide-activated protein kinase complex. Predicted to be active in cytoplasm and nucleus.

NR:

description
5'-AMP-activated protein kinase subunit beta-1-like isoform X2

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K07199 PRKAB; 5'-AMP-activated protein kinase, regulatory beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251088.1 False 1860 mRNA 0.43 8 5548705 5553640
XM_043251089.1 False 1895 mRNA 0.42 9 5548717 5553640
XM_043251090.1 True 1898 mRNA 0.42 9 5548719 5553640

Neighbor

gene id symbol gene type direction distance location
phf24 phf24,LOC107677982,LOC107713387,LOC107744162 coding upstream 3117 5519168 ~ 5545588 (+)
pigo pigo,LOC107713385,LOC107686475,LOC107744133,LOC107687847 coding upstream 56976 5482765 ~ 5491729 (+)
slc20a1b LOC107686476,LOC107744132,LOC107687859,LOC107713386,LOC107555522 coding upstream 71700 5464957 ~ 5477005 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524,LOC107687909 coding upstream 96750 5447331 ~ 5451955 (+)
kcnn2 si:dkey-76p7.5,kcnn2,LOC106564970,LOC107687918,LOC107686472,LOC107567448,LOC106563202 coding upstream 102269 5411683 ~ 5446436 (+)
ppp2r2ab ppp2r2ab,LOC107744137,LOC107720666,LOC107678035,LOC107560523,LOC107687801 coding downstream 338963 5892603 ~ 5906876 (+)
bnip3lb bnip3lb,LOC107560522,LOC107678042,LOC107744138,LOC107687791,LOC107561399,LOC107720674 coding downstream 354373 5908013 ~ 5918050 (+)
dpysl2b dpysl2,dpysl2b,LOC107678023,LOC107560521,LOC107687778,LOC100705567,LOC108277094,LOC103362090,LOC108427246 coding downstream 367519 5921159 ~ 5942002 (+)
tmem230a tmem230,tmem230a,LOC107677999,LOC107744140,LOC103035677,LOC108427245 coding downstream 401471 5955111 ~ 5956835 (+)
igsf9a igsf9a,LOC107744139,LOC107678046,LOC107720681,LOC107687761,LOC107561402,LOC107560520 coding downstream 405199 5958839 ~ 5984926 (+)
G75007 NA non-coding upstream 89844 5456371 ~ 5458861 (+)
G74992 NA non-coding upstream 162850 5383139 ~ 5385855 (+)
G74958 NA non-coding upstream 312750 5235599 ~ 5235955 (+)
G74914 NA non-coding upstream 440591 5107785 ~ 5108114 (+)
G74908 NA non-coding upstream 450141 5097644 ~ 5098564 (+)
G75067 NA non-coding downstream 10063 5563703 ~ 5638236 (+)
G75076 NA non-coding downstream 89249 5642889 ~ 5643101 (+)
G75077 NA non-coding downstream 89909 5643549 ~ 5643766 (+)
G75081 NA non-coding downstream 103719 5657359 ~ 5663075 (+)
G75083 NA non-coding downstream 109517 5663157 ~ 5722027 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 48317 5498647 ~ 5500388 (+)
G74965 NA other upstream 289882 5256838 ~ 5258823 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other upstream 298568 5238279 ~ 5250137 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other upstream 425332 5116866 ~ 5123373 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other upstream 1019703 4481267 ~ 4529002 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other downstream 7011 5560651 ~ 5562085 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other downstream 507551 6061191 ~ 6089587 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other downstream 900425 6454065 ~ 6472107 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other downstream 1427852 6981492 ~ 6993621 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 1588653 7142293 ~ 7150581 (+)

Expression


Co-expression Network