chordc1b (chordc1,chordc1b,LOC107693908,LOC107720649,LOC107718728,LOC107701124)


Basic Information

Item Value
gene id chordc1b
gene name chordc1,chordc1b,LOC107693908,LOC107720649,LOC107718728,LOC107701124
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9625591 ~ 9629093 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251093.1
TTCCGGAAGGGACCTCGCGACgggaagcagcagcagcagcaagcTAGTCAAGACTTCGGATCATTCCCTCTTGGCCACGTTGtacaatatatgttttaatttctgTCATACATTATGTCTGTACTGTGTTATAATAAAGGATGTGGACAACGGTTTGATCCTGACAAGAATTCAGACGACGCATGCACATACCACCCAGGAGTGCCAGTGTTTCATGATGCATTGAAGGGCTGGTCTTGCTGCAAGAGACGAACAACTGACTTTTCGGATTTCCTCAGTATTGCTGGGTGTACGAAAGGCCCTCACAACCAGGAGAAGCCCTCTGAGCCTGTTAAACCAGAAGTGAAGTCCTCCGTGGACAAGAGTGTGAATGATGTGAAGCCAAAGTTTAATGAATGCATCACCCAAGCACCAAAACCTCTAGAGTCTATTCGGCGACCAAGTCCAGATGAGCCTTTCTCCGTTCTACAGCAGAAGATCTCTCCTTCGCTCAAACAGGCTTTAGAAAAGCTTAAATTAACTGAGGAAAATGCACAGGAGATAAAGGAGGAGGATAGTGATGAAATTAAGATAGGGACGTCCTGTAAGAATGGAGGCTGCAGTAAGaCGTTTAACGGACCAGACAGTGATGAAGAGACATGTTTGTATCATTCTGGTGTACCTATCTTCCATGAAGGGATGAAATATTGGAGCTGCTGTAAGAGGAAAACCTCAGACTTCAACACGTTTCTGTCTCAGGAGGGCTGTACCAGAGGAAAGCATCAGTGGAAGAAAAAAGATACCGGAAAGAAAGTTGTGCCGTGCAGGTTTGATTGGCACCAAACAGGAAGTCAGGTCATCATTTCcatttatgccaaaaatgcAGTACCAGAGCTGAGCTTAGTGGAGGGGAACAGTACTGTGCTCAAAATCCACATTATATTTGAAGGAGAGAAAGAATTTGAACAGCACATCAGTTTGTGGGGGGTAATTGATGCAAGTAAAAGTTTGGTGAACATGATGGCTACCAAAATTGAGGTCGTGTTGAAGAAGGCAGAACCGATGTCATGGGCCCGACTAGATCTTCCACCTGTAGCTCcaccaaaggaaaaaaaggaaaaagatgaTAGTGAAGATGAATGTGATTAAGAGACTAACTATTGCTCTGAatagcgattttttttttttttttttttttttgggattgTAAAGGCTAAATGAAGCatgaatgaattataaattTTGAAAGCTCTTCATGTATGTCCAAGGTTAAATTCTATTGTACAGGGCATGTgtagaaggttttttttaaaaaaaaacctagttacacaatacaatattttgtttcaGACCAAA
>XM_043251094.1
TTCCGGAAGGGACCTCGCGACgggaagcagcagcagcagcaagcTAGTCAAGACTTCGGATCATTCCCTCTTGGCCACGTTGtacaatatatgttttaatttctgTCATACATTATGTCTGTACTGTGTTATAATAAAGGATGTGGACAACGGTTTGATCCTGACAAGAATTCAGACGACGCATGCACATACCACCCAGGAGTGCCAGTGTTTCATGATGCATTGAAGGGCTGGTCTTGCTGCAAGAGACGAACAACTGACTTTTCGGATTTCCTCAGTATTGCTGGGTGTACGAAAGGCCCTCACAACCAGGAGAAGCCCTCTGAGCCTGTTAAACCAGAAGTGAAGTCCTCCGTGGACAAGAGTGTGAATGATGTGAAGCCAAAGTTTAATGAATGCATCACCCAAGCACCAAAACCTCTAGAGTCTATTCGGCGACCAAGTCCAGATGAGCCTTTCTCCGTTCTACAGCAGAAGATCTCTCCTTCGCTCAAACAGGCTTTAGAAAAGCTTAAATTAACTGAGGAAAATGCACAGGAGATAAAGGAGGAGGATAGTGATGAAATTAAGATAGGGACGTCCTGTAAGAATGGAGGCTGCAGTAAGaCGTTTAACGGACCAGACAGTGATGAAGAGACATGTTTGTATCATTCTGGTGTACCTATCTTCCATGAAGGGATGAAATATTGGAGCTGCTGTAAGAGGAAAACCTCAGACTTCAACACGTTTCTGTCTCAGGAGGGCTGTACCAGAGGAAAGCATCAGTGGAAGAAAAAAGATACCGGAAAGAAAGTTGTGCCGTGCAGGTTTGATTGGCACCAAACAGGAAGTCAGGTCATCATTTCcatttatgccaaaaatgcAGTACCAGAGCTGAGCTTAGTGGAGGGGAACAGTACTGTGGTAAGGCACCAAGCTCAAAATCCACATTATATTTGAAGGAGAGAAAGAATTTGAACAGCACATCAGTTTGTGGGGGGTAATTGATGCAAGTAAAAGTTTGGTGAACATGATGGCTACCAAAATTGAGGTCGTGTTGAAGAAGGCAGAACCGATGTCATGGGCCCGACTAGATCTTCCACCTGTAGCTCcaccaaaggaaaaaaaggaaaaagat

Function

symbol description
chordc1b Predicted to enable zinc ion binding activity. Predicted to be involved in centrosome duplication and regulation of centrosome duplication. Orthologous to human CHORDC1 (cysteine and histidine rich domain containing 1).
chordc1 Enables Hsp90 protein binding activity. Predicted to be involved in centrosome duplication; chaperone-mediated protein folding; and regulation of cellular response to heat.

NR:

description
PREDICTED: cysteine and histidine-rich domain-containing protein 1 isoform X1

GO:

id name namespace
GO:0010824 regulation of centrosome duplication biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K16729 CHORDC1, CHP1; cysteine and histidine-rich domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251093.1 True 1335 mRNA 0.42 11 9625591 9629093
XM_043251094.1 False 1117 mRNA 0.45 11 9625591 9628862

Neighbor

gene id symbol gene type direction distance location
tpte tpte2,LOC107685006,LOC107720658,LOC107718790,LOC107701101 coding upstream 194755 9425686 ~ 9430836 (+)
LOC122352939 LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193 coding upstream 202784 9416483 ~ 9422807 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding upstream 209252 9407922 ~ 9416339 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding upstream 235863 9325824 ~ 9389728 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding upstream 301711 9303636 ~ 9323880 (+)
grm5a grm5a,grm5,LOC107693909,LOC107720647,LOC107718729,LOC108423821,LOC107555132 coding downstream 4772 9633865 ~ 9658549 (+)
rab38b LOC107693892,LOC107557212,LOC107718792,LOC107701102,LOC108277304,LOC108423822 coding downstream 31624 9660717 ~ 9666861 (+)
bach1b LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 coding downstream 71009 9700102 ~ 9710720 (+)
ugt5d1 ugt5d1,LOC107720577,LOC107557224,LOC107693893 coding downstream 214455 9843548 ~ 9846885 (+)
trim47 trim47,LOC107701143,LOC107718738,LOC107557227,LOC107720633,LOC107693923 coding downstream 365712 9994805 ~ 10000994 (+)
LOC122353086 NA non-coding upstream 341943 9277433 ~ 9283648 (+)
G75984 NA non-coding upstream 352302 9266815 ~ 9273289 (+)
G75974 NA non-coding upstream 372110 9245998 ~ 9253481 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 913393 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 920731 8703514 ~ 8704860 (+)
G76150 NA non-coding downstream 83734 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 133913 9763006 ~ 9766783 (+)
G76182 NA non-coding downstream 193871 9822964 ~ 9824196 (+)
G76184 NA non-coding downstream 195824 9824917 ~ 9825970 (+)
G76248 NA non-coding downstream 256176 9885269 ~ 9902178 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other upstream 229544 9349172 ~ 9396047 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other upstream 418256 9076866 ~ 9207335 (+)
G75937 NA other upstream 890595 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 909314 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 1044463 8580009 ~ 8581128 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 63006 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 297228 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 314641 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 688760 10317853 ~ 10320345 (+)
LOC122352518 NA other downstream 1509745 11138838 ~ 11146033 (+)

Expression


Co-expression Network