brf2 (LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650)


Basic Information

Item Value
gene id brf2
gene name LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15989593 ~ 15993972 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251107.1
CGATTACTGCCGGCCTTGTTTCCGCCCGAGCCAATAACGTCTGCGCGGcggcattaaaaacaaaagtgcgCTTTTCGCAAAAAGAGTCGAGAGAAGCCGCTTTCACCTGTTTGTGTGGGACAGAAACGGTTCGTTTTGATCGTGCATTAAAGTAATACGTTTCAGGATTAACCGCCACCAGGATGCCGAGCAGCTGCCCCGAGTGTGGCTCGTCTAATGTGGTGGAGGACGACCTGTACTCTCAGAGACAGTGGGTGTGTGTGGACTGTGGGTCAGTGGTCTCTGAGGGACATCTGACCTCCACACTGAGCGAAGAGACCCAGGGCAGAGCCGTGCCCTATCATGCCTCCACAGAGACGACCAAGCAACCATGTAGAAATCTAATTGCCGGCTACTCTCGTGTCCGTGCTCTGTGCCGTATCCTCCGAATATCCAGCGACATGGAGTCGGAAGTAGTGAGTCTCTTCGGGCGTGCTTACAACCACCCGAACTTCATCAATGTGACCTTAACCAAGAAAGAGATCTTGGGAGGCTGTTGCGTTCTCGCCATCTGTCGCCAGTGGAACTGGCCTATTGCCATGGGAACCATTTGTTACCTGTTGGGAGTGGAAAATACCACGTTGGGCGCTGTTTACCAAGAGTTTACAAAGGCTCTGAACATTGAGATCGGCGCTGTCAGCATCATGGACATGCTGGAAAGCTTCTGCTATGACTTCAAGCTGGGTCCTCAACAGGTGGAAGAGGTGTTTGCTGAGCCTCCCCAACGGCTGGTGGACAGGACGTCTGCTTTGATTGAGCTAGCCGCTGATGTCTGGATAGTGACGGGCCGCCAGCCTTTGCCCGTCCTCACTGCAGCGGTGTATCTGGCCTGGCAGTCACTGAATCCCACGGTCCGCATGAAATACACCTTCATTAAGTTCTGCAAGATCGGACAAGCGCCTGAACAGTTGTGGCACAGGAGCAGAGATTCGGTTGTGAAGCGGCTGAAAGAGCTGAGGGACGTGCTGTGCAAACTGGGCCGAGAGCTGCCGTGGCTGAGGGGCGGCGAGGTGGAGCCCAGCACCGTGGTCAAGCTGGTGGACGACATCCTGAAGAACCGCAGGGCGTTGCTCGTGAGGGCTGTTAGGAACTACGAACTACAACAGCAAAACGAGACCCAGACCTCACGAACGACAGAACGTGAGCCATCCGATACGAAGCGCTCTGATTTACCTTCCTCACAGACTCCTGAGCTCGTGGTTCCCGGTCAGGCCGAATGTGAGAATCCTCCTGATGAAGAAGACACGGATTATCAACTGCCACCGGACCATTGGAGTAAGAGGCACTTGTTTTTACCGCCCTGCGTGACGAGTCGTAAGCGACGGAGGGTCGACGCGCCACAGCCGGAAGTCACCGGAGATGAAGACATATCAGACAGTGAAATAGAATCATACATTCGCTCTCAGGATGAAATAGAAATCTATCGAAAGATGTATCGTTCATTTCCCAGACTCCGAACGCTCCGCACCGTTCACCTGAGGCTGAAATGCAGACCGATTAAAATGTCTGGTGACAGGAGAGCTGTTGGTTTTTAAGATCAATTGCTGCTTTGAACGAAAAGCCCTTCTGGCGACAGGAAGTCAGTCGACGCCTCGCATCCTGATGTCTGAAGCGTTTACACAAG
>XM_043251108.1
TCGATTACTGCCGGCCTTGTTTCCGCCCGAGCCAATAACGTCTGCGCGGcggcattaaaaacaaaagtgcgCTTTTCGCAAAAAGAGTCGAGAGAAGCCGCTTTCACCTGTTTGTGTGGGACAGAAACGGTTCGTTTTGATCGTGCATTAAAGTAATACGTTTCAGGATTAACCGCCACCATGTGATGGCGTCCAGTATTTGCTGTGTTTGTCAGGGATGCCGAGCAGCTGCCCCGAGTGTGGCTCGTCTAATGTGGTGGAGGACGACCTGTACTCTCAGAGACAGTGGGTGTGTGTGGACTGTGGGTCAGTGGTCTCTGAGGGACATCTGACCTCCACACTGAGCGAAGAGACCCAGGGCAGAGCCGTGCCCTATCATGCCTCCACAGAGACGACCAAGCAACCATGTAGAAATCTAATTGCCGGCTACTCTCGTGTCCGTGCTCTGTGCCGTATCCTCCGAATATCCAGCGACATGGAGTCGGAAGTAGTGAGTCTCTTCGGGCGTGCTTACAACCACCCGAACTTCATCAATGTGACCTTAACCAAGAAAGAGATCTTGGGAGGCTGTTGCGTTCTCGCCATCTGTCGCCAGTGGAACTGGCCTATTGCCATGGGAACCATTTGTTACCTGTTGGGAGTGGAAAATACCACGTTGGGCGCTGTTTACCAAGAGTTTACAAAGGCTCTGAACATTGAGATCGGCGCTGTCAGCATCATGGACATGCTGGAAAGCTTCTGCTATGACTTCAAGCTGGGTCCTCAACAGGTGGAAGAGGTGTTTGCTGAGCCTCCCCAACGGCTGGTGGACAGGACGTCTGCTTTGATTGAGCTAGCCGCTGATGTCTGGATAGTGACGGGCCGCCAGCCTTTGCCCGTCCTCACTGCAGCGGTGTATCTGGCCTGGCAGTCACTGAATCCCACGGTCCGCATGAAATACACCTTCATTAAGTTCTGCAAGATCGGACAAGCGCCTGAACAGTTGTGGCACAGGAGCAGAGATTCGGTTGTGAAGCGGCTGAAAGAGCTGAGGGACGTGCTGTGCAAACTGGGCCGAGAGCTGCCGTGGCTGAGGGGCGGCGAGGTGGAGCCCAGCACCGTGGTCAAGCTGGTGGACGACATCCTGAAGAACCGCAGGGCGTTGCTCGTGAGGGCTGTTAGGAACTACGAACTACAACAGCAAAACGAGACCCAGACCTCACGAACGACAGAACGTGAGCCATCCGATACGAAGCGCTCTGATTTACCTTCCTCACAGACTCCTGAGCTCGTGGTTCCCGGTCAGGCCGAATGTGAGAATCCTCCTGATGAAGAAGACACGGATTATCAACTGCCACCGGACCATTGGAGTAAGAGGCACTTGTTTTTACCGCCCTGCGTGACGAGTCGTAAGCGACGGAGGGTCGACGCGCCACAGCCGGAAGTCACCGGAGATGAAGACATATCAGACAGTGAAATAGAATCATACATTCGCTCTCAGGATGAAATAGAAATCTATCGAAAGATGTATCGTTCATTTCCCAGACTCCGAACGCTCCGCACCGTTCACCTGAGGCTGAAATGCAGACCGATTAAAATGTCTGGTGACAGGAGAGCTGTTGGTTTTTAAGATCAATTGCTGCTTTGAACGAAAAGCCCTTCTGGCGACAGGAAGTCAGTCGACGCCTCGCATCCTGATGTCTGAAGCGTTTACACAAG
>XM_043251109.1
TCGATTACTGCCGGCCTTGTTTCCGCCCGAGCCAATAACGTCTGCGCGGcggcattaaaaacaaaagtgcgCTTTTCGCAAAAAGAGTCGAGAGAAGCCGCTTTCACCTGTTTGTGTGGGACAGAAACGGTTCGTTTTGATCGTGCATTAAAGTAATACGTTTCAGGATTAACCGCCACCAGTTCTCTGTAATGCATCCTATTTTAATAGTGTGATGGCGTCCAGTATTTGCTGTGTTTGTCAGGGATGCCGAGCAGCTGCCCCGAGTGTGGCTCGTCTAATGTGGTGGAGGACGACCTGTACTCTCAGAGACAGTGGGTGTGTGTGGACTGTGGGTCAGTGGTCTCTGAGGGACATCTGACCTCCACACTGAGCGAAGAGACCCAGGGCAGAGCCGTGCCCTATCATGCCTCCACAGAGACGACCAAGCAACCATGTAGAAATCTAATTGCCGGCTACTCTCGTGTCCGTGCTCTGTGCCGTATCCTCCGAATATCCAGCGACATGGAGTCGGAAGTAGTGAGTCTCTTCGGGCGTGCTTACAACCACCCGAACTTCATCAATGTGACCTTAACCAAGAAAGAGATCTTGGGAGGCTGTTGCGTTCTCGCCATCTGTCGCCAGTGGAACTGGCCTATTGCCATGGGAACCATTTGTTACCTGTTGGGAGTGGAAAATACCACGTTGGGCGCTGTTTACCAAGAGTTTACAAAGGCTCTGAACATTGAGATCGGCGCTGTCAGCATCATGGACATGCTGGAAAGCTTCTGCTATGACTTCAAGCTGGGTCCTCAACAGGTGGAAGAGGTGTTTGCTGAGCCTCCCCAACGGCTGGTGGACAGGACGTCTGCTTTGATTGAGCTAGCCGCTGATGTCTGGATAGTGACGGGCCGCCAGCCTTTGCCCGTCCTCACTGCAGCGGTGTATCTGGCCTGGCAGTCACTGAATCCCACGGTCCGCATGAAATACACCTTCATTAAGTTCTGCAAGATCGGACAAGCGCCTGAACAGTTGTGGCACAGGAGCAGAGATTCGGTTGTGAAGCGGCTGAAAGAGCTGAGGGACGTGCTGTGCAAACTGGGCCGAGAGCTGCCGTGGCTGAGGGGCGGCGAGGTGGAGCCCAGCACCGTGGTCAAGCTGGTGGACGACATCCTGAAGAACCGCAGGGCGTTGCTCGTGAGGGCTGTTAGGAACTACGAACTACAACAGCAAAACGAGACCCAGACCTCACGAACGACAGAACGTGAGCCATCCGATACGAAGCGCTCTGATTTACCTTCCTCACAGACTCCTGAGCTCGTGGTTCCCGGTCAGGCCGAATGTGAGAATCCTCCTGATGAAGAAGACACGGATTATCAACTGCCACCGGACCATTGGAGTAAGAGGCACTTGTTTTTACCGCCCTGCGTGACGAGTCGTAAGCGACGGAGGGTCGACGCGCCACAGCCGGAAGTCACCGGAGATGAAGACATATCAGACAGTGAAATAGAATCATACATTCGCTCTCAGGATGAAATAGAAATCTATCGAAAGATGTATCGTTCATTTCCCAGACTCCGAACGCTCCGCACCGTTCACCTGAGGCTGAAATGCAGACCGATTAAAATGTCTGGTGACAGGAGAGCTGTTGGTTTTTAAGATCAATTGCTGCTTTGAACGAAAAGCCCTTCTGGCGACAGGAAGTCAGTCGACGCCTCGCATCCTGATGTCTGAAGCGTTTACACAAG
>XM_043251111.1
ATTACTGCCGGCCTTGTTTCCGCCCGAGCCAATAACGTCTGCGCGGcggcattaaaaacaaaagtgcgCTTTTCGCAAAAAGAGTCGAGAGAAGCCGCTTTCACCTGTTTGTGTGGGACAGAAACGGGATGCCGAGCAGCTGCCCCGAGTGTGGCTCGTCTAATGTGGTGGAGGACGACCTGTACTCTCAGAGACAGTGGGTGTGTGTGGACTGTGGGTCAGTGGTCTCTGAGGGACATCTGACCTCCACACTGAGCGAAGAGACCCAGGGCAGAGCCGTGCCCTATCATGCCTCCACAGAGACGACCAAGCAACCATGTAGAAATCTAATTGCCGGCTACTCTCGTGTCCGTGCTCTGTGCCGTATCCTCCGAATATCCAGCGACATGGAGTCGGAAGTAGTGAGTCTCTTCGGGCGTGCTTACAACCACCCGAACTTCATCAATGTGACCTTAACCAAGAAAGAGATCTTGGGAGGCTGTTGCGTTCTCGCCATCTGTCGCCAGTGGAACTGGCCTATTGCCATGGGAACCATTTGTTACCTGTTGGGAGTGGAAAATACCACGTTGGGCGCTGTTTACCAAGAGTTTACAAAGGCTCTGAACATTGAGATCGGCGCTGTCAGCATCATGGACATGCTGGAAAGCTTCTGCTATGACTTCAAGCTGGGTCCTCAACAGGTGGAAGAGGTGTTTGCTGAGCCTCCCCAACGGCTGGTGGACAGGACGTCTGCTTTGATTGAGCTAGCCGCTGATGTCTGGATAGTGACGGGCCGCCAGCCTTTGCCCGTCCTCACTGCAGCGGTGTATCTGGCCTGGCAGTCACTGAATCCCACGGTCCGCATGAAATACACCTTCATTAAGTTCTGCAAGATCGGACAAGCGCCTGAACAGTTGTGGCACAGGAGCAGAGATTCGGTTGTGAAGCGGCTGAAAGAGCTGAGGGACGTGCTGTGCAAACTGGGCCGAGAGCTGCCGTGGCTGAGGGGCGGCGAGGTGGAGCCCAGCACCGTGGTCAAGCTGGTGGACGACATCCTGAAGAACCGCAGGGCGTTGCTCGTGAGGGCTGTTAGGAACTACGAACTACAACAGCAAAACGAGACCCAGACCTCACGAACGACAGAACGTGAGCCATCCGATACGAAGCGCTCTGATTTACCTTCCTCACAGACTCCTGAGCTCGTGGTTCCCGGTCAGGCCGAATGTGAGAATCCTCCTGATGAAGAAGACACGGATTATCAACTGCCACCGGACCATTGGAGTAAGAGGCACTTGTTTTTACCGCCCTGCGTGACGAGTCGTAAGCGACGGAGGGTCGACGCGCCACAGCCGGAAGTCACCGGAGATGAAGACATATCAGACAGTGAAATAGAATCATACATTCGCTCTCAGGATGAAATAGAAATCTATCGAAAGATGTATCGTTCATTTCCCAGACTCCGAACGCTCCGCACCGTTCACCTGAGGCTGAAATGCAGACCGATTAAAATGTCTGGTGACAGGAGAGCTGTTGGTTTTTAAGATCAATTGCTGCTTTGAACGAAAAGCCCTTCTGGCGACAGGAAGTCAGTCGACGCCTCGCATCCTGATGTCTGAAGCGTTTACACAAG
>XM_043251112.1
ATTACTGCCGGCCTTGTTTCCGCCCGAGCCAATAACGTCTGCGCGGcggcattaaaaacaaaagtgcgCTTTTCGCAAAAAGAGTCGAGAGAAGCCGCTTTCACCTGTTTGTGTGGGACAGAAACGGTTCGTTTTGATCGTGCATTAAAGTAATACGTTTCAGGATTAACCGCCACCAGGATGCCGAGCAGCTGCCCCGAGTGTGGCTCGTCTAATGTGGTGGAGGACGACCTGTACTCTCAGAGACAGTGGGTGTGTGTGGACTGTGGGTCAGTGGTCTCTGAGGGACATCTGACCTCCACACTGAGCGAAGAGACCCAGGGCAGAGCCGTGCCCTATCATGCCTCCACAGAGACGACCAAGCAACCATGTAGAAATCTAATTGCCGGCTACTCTCGTGTCCGTGCTCTGTGCCGTATCCTCCGAATATCCAGCGACATGGAGTCGGAAGTAGTGAGTCTCTTCGGGCGTGCTTACAACCACCCGAACTTCATCAATGTGACCTTAACCAAGAAAGAGATCTTGGGAGGCTGTTGCGTTCTCGCCATCTGTCGCCAGTGGAACTGGCCTATTGCCATGGGAACCATTTGTTACCTGTTGGGAGTGGAAAATACCACGTTGGGCGCTGTTTACCAAGAGTTTACAAAGGCTCTGAACATTGAGATCGGCGCTGTCAGCATCATGGACATGCTGGAAAGCTTCTGCTATGACTTCAAGCTGGGTCCTCAACAGGTGGAAGAGGTGTTTGCTGAGCCTCCCCAACGGCTGGTGGACAGGACGTCTGCTTTGATTGAGCTAGCCGCTGATGTCTGGATAGTGACGGGCCGCCAGCCTTTGCCCGTCCTCACTGCAGCGGTGTATCTGGCCTGGCAGTCACTGAATCCCACGGTCCGCATGAAATACACCTTCATTAAGTTCTGCAAGATCGGACAAGCGCCTGAACAGTTGTGGCACAGGAGCAGAGATTCGGTTGTGAAGCGGCTGAAAGAGCTGAGGGACGTGCTGTGCAAACTGGGCCGAGAGCTGCCGTGGCTGAGGGGCGGCGAGGTGGAGCCCAGCACCGTGGTCAAGCTGGTGGACGACATCCTGAAGAACCGCAGGGCGTTGCTCGTGAGGGCTGTTAGGAACTACGAACTACAACAGCAAAACGAGACCCAGACCTCACGAACGACAGAACGTGAGCCATCCGATACGAAGCGCTCTGATTTACCTTCCTCACAGACTCCTGAGCTCGTGGTTCCCGGTCAGGCCGAATGTGAGAATCCTCCTGATGAAGAAGACACGGATTATCAACTGCCACCGGACCATTGGAGTAAGAGGCACTTGTTTTTACCGCCCTGCGTGACGAGTCGTAAGCGACGGAGGGTCGACGCGCCACAGCCGGAAGTCACCGGAGATGAAGACATATCAGACAGTGAAATAGAATCATACATTCGCTCTCAGGATGAAATAGAAATCTATCGAAAGGTTCGGAAGCAGCTGAAGGAGGCGTAATTGTGTCATAGtgtttacatataatttaaCTGCTGctgggttttttgtttgtttgtttgtttcattgatttatttcatgGATTGCACCGTTcattgttaataaatgcattggttGAA

Function

NR:

description
transcription factor IIIB 50 kDa subunit

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K15197 BRF2; transcription factor IIIB 50 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251107.1 False 1663 mRNA 0.53 8 15989593 15993971
XM_043251108.1 False 1698 mRNA 0.53 8 15989593 15993972
XM_043251109.1 True 1727 mRNA 0.53 8 15989593 15993972
XM_043251111.1 False 1609 mRNA 0.54 8 15989593 15993969
XM_043251112.1 False 1611 mRNA 0.52 6 15990347 15993969

Neighbor

gene id symbol gene type direction distance location
aak1b aak1b,LOC107583399,LOC107746214,LOC107658583,LOC107689018 coding downstream 31148 15931955 ~ 15958445 (-)
bmp1b LOC107688986,LOC107758677,LOC107583398,LOC107746216,LOC107658580,LOC107558131 coding downstream 99103 15872490 ~ 15890490 (-)
pcna pcna,LOC107658578,LOC107583397,LOC107688976 coding downstream 125063 15862177 ~ 15864530 (-)
LOC122352473 pim3,LOC107732271 coding downstream 139601 15847789 ~ 15849992 (-)
LOC122353200 pim3,LOC107732271 coding downstream 151213 15835096 ~ 15838380 (-)
rab11fip1b LOC107758672,LOC107689050,LOC107746209,LOC107583401 coding upstream 940 15994912 ~ 16009528 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding upstream 27105 16021077 ~ 16029140 (-)
ggt1b ggt1b,LOC107758666,LOC107689091,LOC107602052,LOC107658554 coding upstream 87998 16081970 ~ 16095356 (-)
LOC122352490 kdm2b,LOC107602054,LOC107689109,LOC107746202,LOC107558119,LOC107658591 coding upstream 152464 16146436 ~ 16169814 (-)
rhof rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201 coding upstream 189882 16183854 ~ 16187960 (-)
G77820 NA non-coding downstream 2106 15935553 ~ 15987487 (-)
G77821 NA non-coding downstream 57942 15931346 ~ 15931651 (-)
G77831 NA non-coding downstream 61276 15928092 ~ 15928317 (-)
G77830 NA non-coding downstream 62095 15927186 ~ 15927498 (-)
G77827 NA non-coding downstream 68233 15920921 ~ 15921360 (-)
LOC122353141 NA non-coding upstream 105023 16098995 ~ 16101344 (-)
trnag-gcc_65 NA non-coding upstream 124814 16118786 ~ 16118856 (-)
trnag-gcc_66 NA non-coding upstream 124980 16118952 ~ 16119022 (-)
G77936 NA non-coding upstream 184628 16178600 ~ 16179895 (-)
LOC122352611 NA non-coding upstream 195562 16189534 ~ 16193540 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 92361 15892644 ~ 15897232 (-)
G77702 NA other downstream 631361 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 699921 15229969 ~ 15289672 (-)
G77671 NA other downstream 881841 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 1399694 14568330 ~ 14589899 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 22699 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 36555 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 178506 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 421936 16415908 ~ 16490354 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other upstream 438555 16432527 ~ 16437594 (-)

Expression


Co-expression Network