alcama (alcama,LOC107548884,LOC107693963,LOC107576815,LOC107699268)


Basic Information

Item Value
gene id alcama
gene name alcama,LOC107548884,LOC107693963,LOC107576815,LOC107699268
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11290898 ~ 11350637 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251130.1
TCTCCACTGCTCGTCCAGACTTCACCTGCGAACTACGCACAGAGCGACCGCCTGATCCTTTCAGCACACTCAACTACAGAGTTCCCTCGATACTATCAAACAACTTCCGACGTACAAATATCTGTTGAAAATCTCTTCGGACTGTATAAAGGAGAGCCGGGGTTTTCTATAAGGATGCAATCGCTTATCTGCCTTCTCGGTGCCTTTTTAGCAGCCGCTGTGTTTCATCCAGGGAGCTGTGTGCAGACGGTTATAGGTCTGTACGGTGAGACCATAGAAGTGCCATGCAACAATGGAACTAACAAGCCAGATGGCCTTATTTTCACCAAATGGAAATACGTGAAAGATGATGGCTCTCCTGGCGATCTTCTCGTGAAGCAGGCTCAGAAAGAAGAGGCCACCGTATCTGCCACGGATGGCTACAAAAGTAGAGTTAGCATCGCCACTAACTCCAGCCTCCTGATCGCCCGAGGTTCACTGGCCGACCAAAGAGTTTTCACCTGCATGGTGGTGTCTTTAACCAACTTAGAGGAATACTCTGTGGAAGTGAAAGTTCACAAAAAACCATCAGCCCCTGTGATCAAAAACAATGCGAAAGAACTGGAAAACGGCAAACTGACTCAGttGGGGGAATGTGTGGTGGAGAATGCCAACCCACCAGCAGATCTCATCTGGATGAAGAACAACCAGCCCCTAGTGGATGACGGCAAGACGATCATTATCACATCTACTTTCACCAAGGACCCAGTCACAGGCCTGTCCAGTACTTCTTCCCGTCTACAGTACACAGCCAGGAAAGAGGATGTAGAATCACAATTCACCTGCACGGCAAAGCATGAGACGGGCCCCGACCAGGTTTCAGAAGCCAAGACTTTCCCTATTCATTacCCAACTGAGAAGGTGAGTCTACaggttgtttctcagagccCCATTAGAGAAGGTGatgatgtgacactgaaatGCCAGGCGGATGGAAACCCCCCTCCTACCAGCTTCAACTTCAACATTAAGGGCAAGAAGGTCACGGTGACGGACAAGAATGTTTACACTATGACTGGCGTTACCCGAGCGGACAGTGGCATTTACAAGTGCTCCCTGCTTGACAACGATGTGATGGAGTCCACTCAGTTTGTCACCGTGAGCTttctggATGTAAGCCTCACTCCTACAGGCAAGGTGTTAAAGAAGCTCGGGGAAAACTTGGTGGTGTCGTTGGATAGGAACGCCTCGTCTGAAGTTAAAGTGACATGGACTAAGAATACCCATAAATTAGACAAACTGCCTGACTTCTCAAAGCTGACCTATAGTGATGCAGGCACCTATGTGTGTGACGTGTCCATTGAAGGAATGAAACGCAACTTGTCCTTTGAGCTTACAGTGGAAGGTATTCCCAGAATTACAAGTCTGACAAAGCATCGCAGCTATGACGGCAAACACAAAGTCTTGACATGTGAGGCAGAAGGCTCACCTAAACCTGACGTGCAGTGGAGTGTCAACGGAACTAACGAGGAATCGTCGTATGTGAACGGGAAGGCCACGTACAAGCTGACCGTCGTGCCCAGCAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAATCTCGGTTTCGACTCGAAGGAGATCAGCGTGTTTTCTCTATTTGAGGAGGACACGCGCAAACCAGAGAAAAACGAGGACGGCACGGAACAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTGCTTGTAGCCGCTGCTTTGGTGGGACTCACCTACTGGCTCTATATCAAGAAAACAAGACAAGGCAGCTGGAAGACCGGGGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAAAGAGAAGAGCGCAGTCAAAGACGAACGAAGAAGGAATGAACCAGGAAAGAGGCCTTGTCAACACTGAATGTGCAGTACTACACACTTCGATCATCTAATTCCAGACATCTGATTGGACAGCGACGCCTCCCTCGGGCTGCTCGTGCGCGTCACGCATCACAGAATGTTTTCAGAATATTTCCTATTGCAAATAaactgtttgttaaaaaaaaaaaagaaaaaaaaagaaaaaaatccccACCACGTTTCAAAAAGTGTAAAAGAGAAAACCACTTGTGTTGTAAATTTAGTCTGCACTGAGGACTGCATTTACTTTTGATCGattctgacttttctttttgtgttcccAGTGAATGTTCTCCTTTCATGCGCATTGCTGATGTGGTGGGCACAGCTGTTTTGTTCCCCctctagataaaaaaaaaaaaaaaaaaaaatgtaaattcgcTGTACACTTTTTAGGCCTGTGTAAATACGGGGAATACGTTCACTACTTAACGTTggattattgaaaaaataacagATAATACTGGATTTTGGGATTATGTATTGATATCGCACAGTCCCTCCACAGTCGAAAACTCCTAAGATCGCGGTCGGATGCTGGAAGAACGATGAATTCACTGCTGTTACACCTCTGTTCGCTCacgttttatttattggtaCCTCTTTACGTCACTGCTCTATTCATGTTATTTCCTCTAGTTCGAAAGTGGCTAAGTAGTGAAAACGGGTTTAGAAATTTAGCATAGCATAGCGAGATTTTCTGCTACACCCAGTGGCCTTCAGGTTGCATTGCATGATGTCATAGTTGTAGGGCTCTGAACTCAGCAGAACACGGCCCGCTAGGGTTTAACGTAGCGACATAGATGTGACTTGCATATAGTATAAACAAGCAAACATCCACTCTCGGTATCAGACTGGGTGGTAGCGACCTTGCATGCagagactttatttattttattttttttttgtcggtaggaagtaaatataaaagaatagcCCCATTATTCTGCCTTAACAGAAAGAGTCAGTATCGGAAGGCAAACGCGTTAATGTGAAACCTCACTGTATAGCCTTTCGGTTTTGCACTTCTCTCGGACTACAAAAACTgtatcttttgttgtttttacacacCATTTTCTGTATCCGCGATACGTCAGGTTGATGTCCGACACTGTAGTCTTTAAGGATGGGTTCTGTTCGTTGTGGTCTGAAGAAGCTGTAAATATGTTTGAATGTCTTGCTTGTGTTTGGCTATTTATAATGTGTGAGAAATGCAAGGTTTAGCTGTGCTTCTGCTTAGTCACTAAAGAGaccctttttatttaaaatgtaatctcaCTTTGTTACGCATACTCagctttcactttttgttttcgtCTCCACAAACGAGCGTTTTGAATGTCCTTGTTTAGCGTAACCGTCTCGCATATTTTGAACCATCAGGTCAGCAGTGAAACCAAAGAGGGTAACCGCAAAAGAAGGCCATAAAGTATTGTAAATActgacttttgtttttgtacttttgttgacaataaaagtgtacattttgAA
>XM_043251131.1
TCTCCACTGCTCGTCCAGACTTCACCTGCGAACTACGCACAGAGCGACCGCCTGATCCTTTCAGCACACTCAACTACAGAGTTCCCTCGATACTATCAAACAACTTCCGACGTACAAATATCTGTTGAAAATCTCTTCGGACTGTATAAAGGAGAGCCGGGGTTTTCTATAAGGATGCAATCGCTTATCTGCCTTCTCGGTGCCTTTTTAGCAGCCGCTGTGTTTCATCCAGGGAGCTGTGTGCAGACGGTTATAGGTCTGTACGGTGAGACCATAGAAGTGCCATGCAACAATGGAACTAACAAGCCAGATGGCCTTATTTTCACCAAATGGAAATACGTGAAAGATGATGGCTCTCCTGGCGATCTTCTCGTGAAGCAGGCTCAGAAAGAAGAGGCCACCGTATCTGCCACGGATGGCTACAAAAGTAGAGTTAGCATCGCCACTAACTCCAGCCTCCTGATCGCCCGAGGTTCACTGGCCGACCAAAGAGTTTTCACCTGCATGGTGGTGTCTTTAACCAACTTAGAGGAATACTCTGTGGAAGTGAAAGTTCACAAAAAACCATCAGCCCCTGTGATCAAAAACAATGCGAAAGAACTGGAAAACGGCAAACTGACTCAGttGGGGGAATGTGTGGTGGAGAATGCCAACCCACCAGCAGATCTCATCTGGATGAAGAACAACCAGCCCCTAGTGGATGACGGCAAGACGATCATTATCACATCTACTTTCACCAAGGACCCAGTCACAGGCCTGTCCAGTACTTCTTCCCGTCTACAGTACACAGCCAGGAAAGAGGATGTAGAATCACAATTCACCTGCACGGCAAAGCATGAGACGGGCCCCGACCAGGTTTCAGAAGCCAAGACTTTCCCTATTCATTacCCAACTGAGAAGGTGAGTCTACaggttgtttctcagagccCCATTAGAGAAGGTGatgatgtgacactgaaatGCCAGGCGGATGGAAACCCCCCTCCTACCAGCTTCAACTTCAACATTAAGGGCAAGAAGGTCACGGTGACGGACAAGAATGTTTACACTATGACTGGCGTTACCCGAGCGGACAGTGGCATTTACAAGTGCTCCCTGCTTGACAACGATGTGATGGAGTCCACTCAGTTTGTCACCGTGAGCTttctggATGTAAGCCTCACTCCTACAGGCAAGGTGTTAAAGAAGCTCGGGGAAAACTTGGTGGTGTCGTTGGATAGGAACGCCTCGTCTGAAGTTAAAGTGACATGGACTAAGAATACCCATAAATTAGACAAACTGCCTGACTTCTCAAAGCTGACCTATAGTGATGCAGGCACCTATGTGTGTGACGTGTCCATTGAAGGAATGAAACGCAACTTGTCCTTTGAGCTTACAGTGGAAGGTATTCCCAGAATTACAAGTCTGACAAAGCATCGCAGCTATGACGGCAAACACAAAGTCTTGACATGTGAGGCAGAAGGCTCACCTAAACCTGACGTGCAGTGGAGTGTCAACGGAACTAACGAGGAATCGTCGTATGTGAACGGGAAGGCCACGTACAAGCTGACCGTCGTGCCCAGCAAGAACCTCACCGTCAGCTGCCTCGTGACCAATAATCTCGGTTTCGACTCGAAGGAGATCAGCGTGTTTTCTCAGAAAAACGAGGACGGCACGGAACAGGCCAAAGTGATTGTGGGTGTCGTGGTTGGACTGCTTGTAGCCGCTGCTTTGGTGGGACTCACCTACTGGCTCTATATCAAGAAAACAAGACAAGGCAGCTGGAAGACCGGGGAGAAGGAGACTGGCACTTCAGAGGAGAGTAAGAAACTGGAGGAGAACAATCATAAAGCAGATGTCTAAAAGAGAAGAGCGCAGTCAAAGACGAACGAAGAAGGAATGAACCAGGAAAGAGGCCTTGTCAACACTGAATGTGCAGTACTACACACTTCGATCATCTAATTCCAGACATCTGATTGGACAGCGACGCCTCCCTCGGGCTGCTCGTGCGCGTCACGCATCACAGAATGTTTTCAGAATATTTCCTATTGCAAATAaactgtttgttaaaaaaaaaaaagaaaaaaaaagaaaaaaatccccACCACGTTTCAAAAAGTGTAAAAGAGAAAACCACTTGTGTTGTAAATTTAGTCTGCACTGAGGACTGCATTTACTTTTGATCGattctgacttttctttttgtgttcccAGTGAATGTTCTCCTTTCATGCGCATTGCTGATGTGGTGGGCACAGCTGTTTTGTTCCCCctctagataaaaaaaaaaaaaaaaaaaaatgtaaattcgcTGTACACTTTTTAGGCCTGTGTAAATACGGGGAATACGTTCACTACTTAACGTTggattattgaaaaaataacagATAATACTGGATTTTGGGATTATGTATTGATATCGCACAGTCCCTCCACAGTCGAAAACTCCTAAGATCGCGGTCGGATGCTGGAAGAACGATGAATTCACTGCTGTTACACCTCTGTTCGCTCacgttttatttattggtaCCTCTTTACGTCACTGCTCTATTCATGTTATTTCCTCTAGTTCGAAAGTGGCTAAGTAGTGAAAACGGGTTTAGAAATTTAGCATAGCATAGCGAGATTTTCTGCTACACCCAGTGGCCTTCAGGTTGCATTGCATGATGTCATAGTTGTAGGGCTCTGAACTCAGCAGAACACGGCCCGCTAGGGTTTAACGTAGCGACATAGATGTGACTTGCATATAGTATAAACAAGCAAACATCCACTCTCGGTATCAGACTGGGTGGTAGCGACCTTGCATGCagagactttatttattttattttttttttgtcggtaggaagtaaatataaaagaatagcCCCATTATTCTGCCTTAACAGAAAGAGTCAGTATCGGAAGGCAAACGCGTTAATGTGAAACCTCACTGTATAGCCTTTCGGTTTTGCACTTCTCTCGGACTACAAAAACTgtatcttttgttgtttttacacacCATTTTCTGTATCCGCGATACGTCAGGTTGATGTCCGACACTGTAGTCTTTAAGGATGGGTTCTGTTCGTTGTGGTCTGAAGAAGCTGTAAATATGTTTGAATGTCTTGCTTGTGTTTGGCTATTTATAATGTGTGAGAAATGCAAGGTTTAGCTGTGCTTCTGCTTAGTCACTAAAGAGaccctttttatttaaaatgtaatctcaCTTTGTTACGCATACTCagctttcactttttgttttcgtCTCCACAAACGAGCGTTTTGAATGTCCTTGTTTAGCGTAACCGTCTCGCATATTTTGAACCATCAGGTCAGCAGTGAAACCAAAGAGGGTAACCGCAAAAGAAGGCCATAAAGTATTGTAAATActgacttttgtttttgtacttttgttgacaataaaagtgtacattttgAA

Function

symbol description
alcama Enables identical protein binding activity. Involved in cartilage morphogenesis; positive regulation of cell morphogenesis involved in differentiation; and positive regulation of gene expression. Acts upstream of or within animal organ development and axonogenesis. Located in axon. Is expressed in several structures, including digestive system; immature eye; musculature system; nervous system; and pericardial region. Orthologous to human ALCAM (activated leukocyte cell adhesion molecule).

NR:

description
CD166 antigen homolog isoform X2

GO:

id name namespace
GO:0014033 neural crest cell differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0007155 cell adhesion biological_process
GO:0030424 axon cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function

KEGG:

id description
K06547 ALCAM, CD166; activated leukocyte cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251130.1 True 3427 mRNA 0.45 16 11290898 11350637
XM_043251131.1 False 3400 mRNA 0.45 15 11290898 11350637

Neighbor

gene id symbol gene type direction distance location
LOC122352716 LOC107576779 coding downstream 118584 11168125 ~ 11172314 (-)
LOC122352533 LOC107747056,LOC107693900,LOC107548843,LOC107548828 coding downstream 132164 11151111 ~ 11158734 (-)
btg3 btg3,LOC107699262,LOC107744619,LOC107747057,LOC107693957,LOC107548882,LOC107578493 coding downstream 141066 11145385 ~ 11149832 (-)
LOC122352515 ddx56,LOC107733287,LOC107751685 coding downstream 152207 11081639 ~ 11138691 (-)
cltca cltca,cltc,LOC107548879,LOC107744621 coding downstream 211480 11046407 ~ 11079418 (-)
si:ch211-103f14.3 LOC107693965,LOC107747051,LOC107548846,LOC107699269,LOC107744635,LOC107576832 coding upstream 101986 11452623 ~ 11457502 (-)
zpld1a LOC107548885,LOC107693966,LOC107747018,LOC107744615,LOC107576843,LOC107699252 coding upstream 108196 11458833 ~ 11466838 (-)
tmem126a LOC107747013,LOC107744609,LOC107693976,LOC107691630 coding upstream 180200 11530837 ~ 11533005 (-)
ift46 NA coding upstream 358794 11709431 ~ 11711598 (-)
vps11 vps11,LOC107744603,LOC107691631,LOC107588528,LOC107693978,LOC107747034 coding upstream 363263 11713900 ~ 11719645 (-)
G76657 NA non-coding downstream 58 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding downstream 55208 11234372 ~ 11235690 (-)
G76642 NA non-coding downstream 180063 11096963 ~ 11110835 (-)
G76627 NA non-coding downstream 199837 11087586 ~ 11091061 (-)
LOC122352521 NA non-coding downstream 246045 11026069 ~ 11044853 (-)
G76693 NA non-coding upstream 135269 11485906 ~ 11486428 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding upstream 351234 11701871 ~ 11766210 (-)
LOC122353234 NA non-coding upstream 1097905 12448542 ~ 12453651 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 1254582 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 1327730 12678367 ~ 12678625 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 83646 11176569 ~ 11207252 (-)
G76625 NA other downstream 252167 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 307160 10972881 ~ 10983738 (-)
G76498 NA other downstream 810709 10478059 ~ 10480189 (-)
G76438 NA other downstream 907589 10380096 ~ 10383309 (-)
ccdc83 NA other upstream 154673 11505310 ~ 11584960 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 1328353 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1431716 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 2141636 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 2187519 13538156 ~ 13543615 (-)

Expression


Co-expression Network