ripk4 (ripk4,LOC107589146,LOC107577855,LOC107686166)


Basic Information

Item Value
gene id ripk4
gene name ripk4,LOC107589146,LOC107577855,LOC107686166
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13612144 ~ 13622868 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251135.1
ttatGCCCCTCCCACCCCTTACCTGAACAGAGGGGTAGGGCCAGACTGAAGCCGTCTGTACAgacagggaaaaaaacaaggaaCCGCTCACAACCTGCTTTTATTTGACGGAAAACCTTTTCATGAGAAAAAGAGAATCCAGATTGCATTGGATCGTATTAAAGAGCTTGAAACATGGACGTCCCAGAAAATTCCCCAGGGATTATGGGACTTCTGAAAACTTTTGACGCTTCAGAGTTTGGGAGTTGGGAAAAGATTGGCTCCGGCGGCTTCGGACAGGTGTACAAAGTACGACATATGCAGTGGAAAACATGGCTGGCGATCAAGTGCCCTCCTAGCCTTCATTCAGATGAAAAGGAGCGTGCCGAACTTTTAGAGGAGGCCAAAAAGATGGAGGCGGCTAAATTCCGCTACATCCTCCCCGTTTACGGCATCTGCAGCGATCCGCAGGGACTGGTGATGGAATACATGGAGACGGGCTCTTTGGAAACCTTGCTGGCCTCTGAGCCTCTGCCCTGGGAGCTGCGTTTCCGTATCATCCACGAGACGGCGGTGGGGATGAACTTCCTGCACTGCATGAACCCGCCCCTTCTACATCTCGACCTCAAACCTGCCAACATCCTGCTGGACGCGCACTACCACATCAAGATTTCTGACTTCGGCTTGGCGAGGTGGAACGGCTTTGCCAGGAACGACGATATTAGCCGCGATGGCTTTTGCGGCACAATCGCCTACCTTCCTCCTGAGAGAATCATAGAAAAAGACAGAATCTCTGACACTAAACACGACGTGTACAGtttttctATTGTAATCTGGGGAATCCTCACTCAGAAGAAGCCATATCAAGGAGAGAATAACATCCTGCACATAATGGTGAAGGTGGTGAAGGGCGTTCGTCCAGATCTCAGCATTATTCCTCGCAGTCGTCCTCAGGCCTGCTCGGGATTCCTGTCCCTTATGCAGAAATGCTGGGCACATTCCCCTGAAGCCAGGCCCAGTTTTCAAGAGATCACTTCAGAGGCTGAGGAGCTGTGCACCAAACCTCATGACGAGTCTAGAGCGTCCGTTTCTTCAGAACCAGACTGTTCCCCCTGCCCTGCCCCAGCCTCCAGTGAACAGACTAACAACCAAAAGCCGGTGAGGCCGAAGTCAGCTATGCTACCTGAGAAAGACTACAGCCTGTCTGAGCTGCTGTGTCAGATTGACTCCGGCTTGTCTCGTAGTTTTAGCAATGTCAAAGAAGAGTGCCTTGAGAGCAAAGACAACACCAGCAAGAGACTGTCAGGAATCTCCTCCGTGGACTCAGCTTTCTCGTCCCAAGGCTCAATTACATTGTcctttgaaaaagaaaatgctgtgaATGACTCCAGCGAGTTACAGAAGAAGAAGCTTTGTGAAGCCATTCGCACTGAGGACATTGCCAAGCTGATGAAGATCCTCCAACCACAAGATGTTGACTTGCTCTTGGAGGGCGGCAGCAACCTGCTCCACTTCGCAGTGAATCTGGCCAACGAGGAAGCGGTTAAGTTTCTGCTGCTTAGCAACTGCAACCCTAATTTGCCCAATAATCACGGAGCCACGCCCCTTCACCTGGCTGCCGAAAAGCGAATGAAGGGAGTGTCTGAGATTCTCCTGAGCCGCAAGACAACAAATGTCAACGCCAAAGATGAAGACCAATACACACCTCTACACTTTGCAGCCCAGAACGGCGATGAACCCCTCACCCGTTTACTCCTAGACCGTTGCGCATCCATTAACGAAATAGACGCTCAGGGACGTACACCGACGCATATCGCTTGCCACCATGGACAGGAGAACGTGGTGAGGGTCCTGCTAAGTCGTGGAGCGGACGTCCATGTGAAAGGTAAAGACGACTGGACGGCACTACATCTGGCCGCCTGGAAAGGCCATTTGGGAATAGTGAAGCTCCTGGTTAAGCAGGCGGGCGCCAATGTCGATGGCCAGACGTCAGATGGGCGCACTCCACTTCATCTGGCGTCTCAAAGGGGACAGTACCGGGTGGCACGGATCCTGGTGGAGCTTGGCGCTGATGTGCATCTCACCTCCGACGGCCTCCACACTCCCCTTCACGTGGCTGCAGAAACCGGCCACACCAGCACTTCGCGGTTGCTTGTTAAACATGCCGCCAATATCCACAGCCGGACGGCCAATGGCTGCACCGCCTTGCACCTGGCTGCGCAAAAAGGCCATCTACCGACAGTTAAAATGCTTCTGGCGGAGGGTGCCGACCCTGAGAGCTCCAACCACAGCCTTCGCACTGCATGCCACCTGGCTGCCGAGAGCGGCTACTGCGAAATCCTCAAAGAACTTCTCCAGAGCTGCCCCAACGTCGCCAACACCCAAGACCGGAATGGATTCACTCCGCTCCACCTGGCCGTACGCGGCGGCTACAAAGACGCCATCTGCGTCCTGCTTGAACGTGGAGCTGATGCTGCGCCGCTATCTCCGCGGCCCATCGGAGAACATTCGCTGGACTACACGTCGGAATCGGAGCCGGAGAGTCCGAACCCCCTCACGCCAACAAAACTCCAGAGGAAAGTAGTTGTTCTGAAACTCACCACCCACAAAAACACTGATGGCGCACTGATCCCTGTAGACTCTCTGAGCGAATCGGCGCTTTGTTGAGGGTCCTAGCGGGGTTTGACCTCATGGACTTCAGGAACCCTTGCCAAAATGCTCATAGACTCTTTCTCCCTTTTTATCATTCCTACATTGCAAAAACTGACAGATGCTGGACTTCTTATCCATTGGGATTTAATGTACATATTGTAAGTACTCATTTATTGAAACATCGACAGATATTTCCTTCAGGGTTTGGGCTCTCATTAGCTTTCCTACCTAATAATAGAGTTATTTTGTGATTGGAAATGcatttaagtgtatatatatatatatatcggtaATGTAGATATTGTACCTCatttaaattcactttttttgttgtatgtCTTTAATATCATTGTCTTCTTTTTGTTACCAAAGTGCAGTAGTGATTGATGCAGTGCAAGCAACCCCATAATTGTTTAGACATTTTGTTGTagcatattattagaataagCTCACCCTATATCAGCTTAATATTGCACTTCAAAGCtataatttaaacagaaatggCAACGCTCTGAGGCCAATTATCTAATTAGAATGGTTCGCACAAAaagaaatgtgcttttataaagCCATTTGGCTCGTTCCATGGGAATGTGCCCTCAGGAGGATCACAGGTGTGGGTAGAAGTCTGGGGGGAAGGCTGTATCCCATGTACCCTCATGTTCAGGCCATTGGCTCATTCCTAAGACCACTTTATCTTTTCATCACTCTGTAAAACCGCTGCGCCGAGCCCTGTTTTATGCCAGTGGGGGCGTAGCCGTCATTACCCTTCACTGTCTGGAACAGACAGCCTCTTAATTGCTAGGTCTTTAAACTGCTGTTGAACTCTGGGTTTTTTTGAATGCgatttaatagttaatagtaacAACAATAGCTGTTAGCATCCATGCATTTGCATctgtataaaacaaaatcatccGTAGCAAACCAATCAGTAATCCAACGCCAACACCTTTTTCAAGTTTATCTTGACTTTTGTAATAAGTTGATAAAGCTGCCTCGTCATTTcccttttgtaaaaaaaaaaaaatctctcattTATTCATTGTGTTTGCACACTTTTATATTTGCACACTTTTATATTTGATGGAAAATTAAAGTGCATcacatatatgaaa

Function

symbol description
ripk4 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Is expressed in several structures, including EVL; digestive system; ectoderm; epidermis; and peripheral olfactory organ. Orthologous to human RIPK4 (receptor interacting serine/threonine kinase 4).

NR:

description
PREDICTED: receptor-interacting serine/threonine-protein kinase 4

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08848 RIPK4; receptor-interacting serine/threonine-protein kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251135.1 True 3749 mRNA 0.49 8 13612144 13622868

Neighbor

gene id symbol gene type direction distance location
c10h21orf91 zgc:110006,LOC107697414,LOC107734464,LOC107686165,LOC107589110,LOC107728860 coding downstream 3992 13589309 ~ 13608152 (-)
supt20 supt20h,supt20,LOC107728858,LOC107589048,LOC107697409 coding downstream 24018 13574431 ~ 13588126 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding downstream 40852 13566544 ~ 13571292 (-)
smad9 smad9,LOC107728873 coding downstream 46528 13558478 ~ 13565616 (-)
ccna1 ccna1,LOC107728895,LOC107686159 coding downstream 65821 13544044 ~ 13546323 (-)
pom121 pom121c,pom121,LOC107728848,LOC107697416,LOC107743381,LOC107577844,LOC107686167 coding upstream 5965 13628833 ~ 13638224 (-)
smg8 LOC107686170,LOC107589184,LOC107577889,LOC107743383,LOC107697419,LOC107728850 coding upstream 31887 13654755 ~ 13658687 (-)
prr11 LOC107728831,LOC107686171,LOC107589205,LOC107579091,LOC107743468,LOC107697420 coding upstream 36269 13659137 ~ 13662139 (-)
rhbdd2 rhbdd2,LOC107728880,LOC107686174,LOC107577912,LOC107697423,LOC107743386 coding upstream 58273 13681141 ~ 13684137 (-)
gabrr3a gabrr3a,gabrr3,LOC107589257,LOC107697425,LOC107686176,LOC106563567,LOC106603079 coding upstream 76366 13699234 ~ 13710448 (-)
LOC122352841 NA non-coding downstream 55487 13548254 ~ 13556657 (-)
G77294 NA non-coding downstream 55952 13555556 ~ 13556192 (-)
G77284 NA non-coding downstream 123311 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 283251 13328642 ~ 13328893 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding downstream 296570 13313194 ~ 13315574 (-)
G77315 NA non-coding upstream 47104 13669972 ~ 13670446 (-)
G77349 NA non-coding upstream 168453 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 177145 13800013 ~ 13800912 (-)
G77351 NA non-coding upstream 181615 13804483 ~ 13804892 (-)
G77352 NA non-coding upstream 182221 13805089 ~ 13805329 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 68529 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 79080 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 823049 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 842727 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 2027184 11505310 ~ 11584960 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 20316 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 183236 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 579394 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 581548 14204416 ~ 14208006 (-)
G77443 NA other upstream 611638 14234506 ~ 14264322 (-)

Expression


Co-expression Network