XLOC_006603 (cog2)


Basic Information

Item Value
gene id XLOC_006603
gene name cog2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23996070 ~ 24018916 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012753
AGCTACTCGTCAGCGTGTGCCATGTTTGCGGAAGTTGAATCGATTACTCTGTCATTTAAACGAAATGTAGCACTTTCTACTCACGTTTAACTAAATAcattctgattttatttatttgtgacccGTCCTAAAAGAATGATGACCTTACCGAAGGCACCGGATTCTCTGTGTTTCGACAAAGACGAATTTATGAAGGATGACTTCGACGTGGACAAATTTGTGGCTGACTGCCGAAAGCGTGTCCAGTTGGAGGAGATGCGTGAAGATCTGGAGCAATATTACAGACTCCTCAAAACAGCCATGGTTGAGCTTATTAATAAAGACTATGCAGATTTCGTTAACCTCTCCACCAATCTTGTTGGGATGGATAAAGCCCTCAATCAGCTGTCTGTTCCACTCGGCCAGTTACGTGAAGAGGTGCTGAGTTTACGATCCGCTGTGAATGAAGTTATTGAAGCTATAGACACCCAGTTGTCCAAGCAGGATGACATTCAGAAAAAGAAGCTCTGTGTGTTAAGACTGATTCAAGTTGTGAGATCAGTAGAGAAGATTGAGAAAATTCTTCACCAAAACACCAAAGATACAACATCACTGGAGACCAGCAGtCCACTTCTGGCAGGTCAGATTTTAGAGCGGATTGCCACTGAATTCAACCAGTTACAGTTTCATGCTGTCCAGAGCAAAGGAATGCCATTGCTTGATAAAGTCCGCCCGAGAATAGCAGGTATCACAGCTATGCTTCAGCAGTCCCTTGAAGGTTTATTGATCCAAGGCCTGCAGACGTCAAACATAGATATCGTACGCCATTGCCTCAGGACATATGCTACCATCGATAAGACCAGGGATGCAGAGGCGCTGGTTGGACAGGTCTTAGTCAAACCGTACATGGATGAGGTTATAGTTGAACAGTTTGTCAAGTCTAGCCCTAATGGTCTTAAGGTGATGTACGCAAAGCTGTTAGAGTTTGTGCCTCATCACTGCAGACTTCTGCGAGAGGTGACCGGTGGCGCAATCTCTAGTGATAAAGCTGACATTGTTCCCGGATACGACTTCCTAGTGAACTCCGTTTGGCCTGAAATCATTAGAGGTGTTGAGGAAAGAGTCCCTTCTCTTTTTAATCCCGGAAACCCAGATGTGTTTTATGAGAGATACACTGTCAGCATGGATTTTGTGCGTAAGTTTGAGAGGCAGTGTGGTTCTCAGGCCAGTGTGAAGAGGTTGCGAGCACATCCAAGCTACCAGAGCTTTCACAACAAATGGAACCTGCCAGTGTATTTCCAGCTGCGcttCAAGGAGATTGCTGGAAGTTTAGAAAGTGCCATTGCTGATGGATTAGAGGCAACTCCAGTGGGCAGCAGCTTCCACCTGCAGGTGACCGAGGTGTTGTGGAGCTGTGTGTGCAGGTGCTGGACTGACCAGGTGTACTTGCCACCCCTCGCTCATCGGTTCTGGAAACTCACTCTGCAGCTCATCTCCAGATACTCCACCTTTCTTACCGAGGTTCTAACAAAAACATCATCTACAGAGGCAAGCAAAGATTCAGTAAGGCCGCTTCCCAGCTCTGCATCTTCCACATCCAGCCGCACATCACAGGATGCAGACAGTGAAACTGGCGGTCCCACTGTTTTATCTACTAAACAGCTTTTCTTCATTGCAGCTGATGTTGATAAGTTACAAGGAAAGATTCCAGATATCTCAGAGATGATCAAGGCAAAATTGGAGAATATTGGATTCCAAAACTTTGCCATAGTTTCAgAAGCCTTGCAGGATTCCAGCACATCTCTGTCCAGCTGCGTCCCCACACTGAACAGCAGAATGACTCAGCATCTCACAGAAAGGAGCATTCGCTTCCTGAAAAACGCTTCAGAAGTCCCGCGACTTTATCGAAGGACCAACAAGGAAGTGCCCACTAGAGCCTCGGCCTACATGGACAATGCTCTCCGGCCGCTCCATCAGCTGGTCACTGACTCGAAAAATGTGGTGAAAGACTCCATCATCCAGGAGTGGCTCCGGGTCACGCTGTCAGACTGCACCCATCGATATTTTGAGACTATATCAGACGTGCTGAGCTCAGTGAGGAAGATGGAGGAAAGCCTGAAAAGGTTGAAACAGGCTAGGAAAACTACCACCACCAGCACGGTTGGGGTCAATGCAGGGCCATCAGATGACAGTAAGATCCGTCTGCAGCTGGCACTGGATGTGGAGTATCTTGGAGAACAGATTGAGAATATGGGTCTTCAGCCAAGTGACATCACCATGTTCTCCTCTCTGCTGGAGCTGGTACAGGAGGCAAGAGATCTCGCTTCAACTGAGCAGATGGGTTCCTAAAATCCAAATGCCCCTCGAAGGAGCCAGATCAAAAAGTAGGGTCCAAAATGATTCCTGATCGAATGCCTTCAGCATCCATATGCTCAGAAAGATTAAGAAAATATGGCTCAGGAACGGTTTTATGGAGTCCTGCCATCCCTCAACTGTTCTACTAGCAGCTCAGTCTTTCTGGAGAAGGAATACACTAAAAGAATGTGATTTACTCTCAGATAAGTTATTTATTGTTGAACTGTAATGGGATAATAAGACCGGAAATGTCATATTTATGGTTCGAAATGATCGCAGAAATGAATAGAGTTTGTTGTATGAGCCAATCAGCACTCAGCGTATAAAGTGCTAAGAGCTGTTGTGTCCTGTCATATGTGGttacatcagaaaaaaaacagcacacaACACAGGTGTTTGACTTGTGTTGTGTCTGTCAGAAAGTCTTCTGCTCAGACATCAGCTCTGGTGAACCCTGCCAAATAGAGTGCAAACACTGAAGAGGTTTATAGTCAAATGGttatttttctttgtcttttctaAATATCAAATTTGGGATGGAGTTTGTGTTTCAAAAAAGGATTTAACAATAAAATCGGAGGATAGTATGAGA

Function

symbol description
cog2 Predicted to be involved in Golgi organization and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIq. Orthologous to human COG2 (component of oligomeric golgi complex 2).

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0007030 Golgi organization biological_process
GO:0015031 protein transport biological_process
GO:0017119 Golgi transport complex cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-2671 Predicted to be involved in Golgi organization and intra-Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIq. Orthologous to human COG2 (component of oligomeric golgi complex 2).

Ensembl:

ensembl_id ENSDARG00000004037

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012753 True 2926 mRNA 0.45 18 23996070 24018916

Neighbor

gene id symbol gene type direction distance location
XLOC_006602 AL772289.1 coding downstream 34664 23961292 ~ 23961406 (-)
XLOC_006601 phactr2 coding downstream 39709 23919480 ~ 23956361 (-)
XLOC_006600 rgs17 coding downstream 239370 23728176 ~ 23756700 (-)
XLOC_006599 map3k21 coding downstream 329491 23634817 ~ 23666579 (-)
XLOC_006598 prim2 coding downstream 383701 23488282 ~ 23612369 (-)
XLOC_006604 galnt2 coding upstream 49661 24068577 ~ 24218795 (-)
XLOC_006605 CR762497.2 coding upstream 108147 24127063 ~ 24127179 (-)
XLOC_006606 urb2 coding upstream 212411 24231327 ~ 24263682 (-)
XLOC_006607 CR762497.1 coding upstream 264754 24283670 ~ 24286390 (-)
XLOC_006608 rab4a coding upstream 276980 24295896 ~ 24311628 (-)
XLOC_006471 BX537274.2 misc downstream 13731165 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 23169845 825904 ~ 826225 (-)
XLOC_006597 NA non-coding downstream 584439 23408029 ~ 23411631 (-)
XLOC_006595 NA non-coding downstream 778252 23212759 ~ 23217818 (-)
XLOC_006585 BX530068.1 non-coding downstream 1148586 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 1211637 22778060 ~ 22784433 (-)
XLOC_006611 NA non-coding upstream 328073 24346989 ~ 24351543 (-)
XLOC_006616 NA non-coding upstream 554170 24573086 ~ 24574746 (-)
XLOC_006617 NA non-coding upstream 558349 24577265 ~ 24578022 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12892163_12901139 COG2 coding CI01000012 null 12892163 ~ 12901715 (+)