kcnip1b (kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032)


Basic Information

Item Value
gene id kcnip1b
gene name kcnip1b,LOC107720696,LOC107552061,LOC107742366,LOC107586147,LOC108444575,LOC103024145,LOC102788752,LOC101476742,LOC107676032
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7450917 ~ 7483453 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251170.1
AGCACAGAGCAGTCGGAAACGCTGCAGCAGACCACAGACTTCTCGCCACAACaccacacaacacacaccacacactcacacatgcacacacacacatacagctagAGGAAGAGAGAGGCAGAGGCGTAACCAGGAGAAGCATCGTCAAGGAAAAGGAAAGCCACTCTTTTGTCTCCATGGACACTCAACTTCCTCCAAGCAGTTCTTAGTCCGTGTAGCGCAGCAGCGGGCTCTTGCCATCCGCTTAATAATTCATCAGGTCGGTCTCTGAGCTTTGAGCCTGCAGCGCTCTCCAACTTTTCCCCTCTAACTTTCACAGCAGCAGTCGGCTGTTTCAGCAACTCTCCTTTTATACTTCAAACGGCTGGCACAGAGGCGGTGGAGAACAGGTTCAGGCACTTTGTGAGcatcttgtgtgtgtttgtgcgtgcgtgtgagtgtgtgtgtgtgtgtgtgaggacagTAGGCGAaaggtgtgcgtgtgtgtcatCTGGGCATCCTGCTCGTCTCATTCTTGGACTTGGAACCCATTGTTAAAAGTGCAGTTCTTGTGGGACCGGACGAGCAAGAGGCGGTGTGAGAAGCACTCTGGAGTCCCCCGAGAGGCTCGTATGGGACGTACGCCTCGTCTATGAGCACCGCTGCTGAAAGCAGTGTTTAGGCTGTCGTTAGGGGCTGTCTGCGCTCCCTTGGATTCTCTCTCATCATGGCCGGCTGCACCAGCCGCTGCAGACAGGGGGTGCTAAAGCTCATTCAGTCCCTCCAGAGGCTTGTTTCAGGAACCCTCAGCAAAGATAAGATAGATGACGAATTAGAGATGACGATGGTCTGCCATCGGCCGGAGGGTCTCGAGCAGCTCGAGGCGCAGACAAACTTCACCAAACAAGAGCTACAGGTCCTTTACAGAGGCTTCAAAAACGAGTGTCCAAGTGGAGTGGTGAACGAGGagacatttaaacacatttatgcaCAGTTTTTTCCACATGGAGATGCAAGCACATATGCACATTATCTCTTCCATGCGTTCGACACCAGAAATAACGGATCCATAAAGTTTGAGGACTTTGTGATGGGACTGTCTACTCTCCTGAGGGGGACGGTCAGAGAGAAACTGGAATGGACATTTCATCTCTATGACATTAACAAAGACGGATTTATCAATAAGGAGGAAATGACAGAAATAGTGAGGGCCATCTATGACATGATGGGGAAGTACACGTATCCAGCTTTAAAAGGGGATGTACCAAAGCAGCATGTGGATGCCTTCTTTGAGaaaatggacaaaaacaaaGATGGAGTTGTAACATTGGAGGAGTTTGTACTTGCCTGTCAGGAGGACGAAAACATGATGAGATCCATGCAGCTCTTCGAAAATGTGATGTAGAGAAGCTCCaccagaagaagaaaagaacaaaacagagcGTGGGAAACGGAACGAAgggactttacatttaaatatatatgtgctaTATTTCACTGAGTTCTGGGGGAATATGACGGCATGAGAGGAATGAGAGTCTGTGGGCttactttttctctctctattcaAATCTTTGTAACATATTCAGTGTTGTTTCCCGCTGGTGTTTTGGGAAACTGCCAGCCCAGAATCCACTTTGATCCAGCCACGGAAGACTGCGTATGTTTGAAAGGCATTGTGCATTTCCTGAGTGAGTGGTGATGATCAACATCCTTCTTCCTTACGAAAAACAGAAAGCCACTCTCAAACAGTTTTTCATTTGCTTGACCCTAGAGCTCAGGACTCTACTTTTAGTGTACCGGAACTGCATCCGGGAGGAACGGCAGCCTCCTTTGCTTGCTTTCTTTGCCAGAAGCGCTTGCATGAGAAAAACCAGCAGACGTGTTCCCTATGAGTTGCTTGAAAATAATGCTGGCCCTCAAAATATCGAATTTCGTGATTTATTTATCTCTGCGAGGGGTTTAGAGGTTACTTAATTTGATGTTGATTCTGTCTTGTGTTGTCAGCGCTGTTTGTTAGTAATTGCTGTGTCCAGTCCGCCCACTTAATGTATGTCTACCTGTCTCAGTACTTACCAAGCCATTTATGCCCACCAGATCATAGTGAATAAGGTGGGACTGAAGGTAAAAGTCTGTGTATCCAAGTATGGATGTAAGTGAGGAGTATTAACGAAACTATAGAAACTGTATTCAATCCCAACAAATGACAATCTAGTCCCTGGATCCCCTTCTGTCCCCAGATACCTCTGCACAGTTTCAAGAAGGAGGACTGTATTtgtaagagagaaagagagagagagagcgagaaaataaaaaaaacataaatcacataataaagataaataatagttatttatgGGTCAGGGTCAGTCGTAGGACAAATAAGCTATGTATATACTTGCAAGAATGGTGCCACATGAAGAAATGTCCAATGAGGcagatacaaactgtgaaaatgaaGTATGAGAAATATGCTGTGCAATTCAAATCTCagtcaaaaatgattaaaaacatttgtggaATAACA
>XM_043251171.1
CCTGACACCGAATAACAAACGGGACCAAGCAGAAACAGCAAGGGCGAGgagcaaagaaagagaaatgaaggGAGAGAGGGAGTGAAATTTGTGGGAGGGGCATCAAGGAAGGAACCATATGCTTTTAGCAAGAAAATTCCAGCTTGTCTTCATTCACTGACAAGTGAGAGGAGAgtggagagagaaaacaagagcAGGGGCTTCAACAAAGAAAGACAGACTGGCGGACTCAACGCTTATTAGTTTGAACGTGCGTGTCTTTGCGGTGACAACATGGGAGCAGTAGTGGGCACGTTGACTATGCAGACAAGACAAAGGCAACCATCTAGAGATAAGATAGATGACGAATTAGAGATGACGATGGTCTGCCATCGGCCGGAGGGTCTCGAGCAGCTCGAGGCGCAGACAAACTTCACCAAACAAGAGCTACAGGTCCTTTACAGAGGCTTCAAAAACGAGTGTCCAAGTGGAGTGGTGAACGAGGagacatttaaacacatttatgcaCAGTTTTTTCCACATGGAGATGCAAGCACATATGCACATTATCTCTTCCATGCGTTCGACACCAGAAATAACGGATCCATAAAGTTTGAGGACTTTGTGATGGGACTGTCTACTCTCCTGAGGGGGACGGTCAGAGAGAAACTGGAATGGACATTTCATCTCTATGACATTAACAAAGACGGATTTATCAATAAGGAGGAAATGACAGAAATAGTGAGGGCCATCTATGACATGATGGGGAAGTACACGTATCCAGCTTTAAAAGGGGATGTACCAAAGCAGCATGTGGATGCCTTCTTTGAGaaaatggacaaaaacaaaGATGGAGTTGTAACATTGGAGGAGTTTGTACTTGCCTGTCAGGAGGACGAAAACATGATGAGATCCATGCAGCTCTTCGAAAATGTGATGTAGAGAAGCTCCaccagaagaagaaaagaacaaaacagagcGTGGGAAACGGAACGAAgggactttacatttaaatatatatgtgctaTATTTCACTGAGTTCTGGGGGAATATGACGGCATGAGAGGAATGAGAGTCTGTGGGCttactttttctctctctattcaAATCTTTGTAACATATTCAGTGTTGTTTCCCGCTGGTGTTTTGGGAAACTGCCAGCCCAGAATCCACTTTGATCCAGCCACGGAAGACTGCGTATGTTTGAAAGGCATTGTGCATTTCCTGAGTGAGTGGTGATGATCAACATCCTTCTTCCTTACGAAAAACAGAAAGCCACTCTCAAACAGTTTTTCATTTGCTTGACCCTAGAGCTCAGGACTCTACTTTTAGTGTACCGGAACTGCATCCGGGAGGAACGGCAGCCTCCTTTGCTTGCTTTCTTTGCCAGAAGCGCTTGCATGAGAAAAACCAGCAGACGTGTTCCCTATGAGTTGCTTGAAAATAATGCTGGCCCTCAAAATATCGAATTTCGTGATTTATTTATCTCTGCGAGGGGTTTAGAGGTTACTTAATTTGATGTTGATTCTGTCTTGTGTTGTCAGCGCTGTTTGTTAGTAATTGCTGTGTCCAGTCCGCCCACTTAATGTATGTCTACCTGTCTCAGTACTTACCAAGCCATTTATGCCCACCAGATCATAGTGAATAAGGTGGGACTGAAGGTAAAAGTCTGTGTATCCAAGTATGGATGTAAGTGAGGAGTATTAACGAAACTATAGAAACTGTATTCAATCCCAACAAATGACAATCTAGTCCCTGGATCCCCTTCTGTCCCCAGATACCTCTGCACAGTTTCAAGAAGGAGGACTGTATTtgtaagagagaaagagagagagagagcgagaaaataaaaaaaacataaatcacataataaagataaataatagttatttatgGGTCAGGGTCAGTCGTAGGACAAATAAGCTATGTATATACTTGCAAGAATGGTGCCACATGAAGAAATGTCCAATGAGGcagatacaaactgtgaaaatgaaGTATGAGAAATATGCTGTGCAATTCAAATCTCagtcaaaaatgattaaaaacatttgtggaATAACA
>XM_043251172.1
TCCacatgatagacagacagaacgcAGAGGAAAGTCAGAGTGTGCGAGAGCTAAGTAACTAACAACTCTGAGAGTAAAAGAGGGTTGAAAGATCAGAGGATAAGAAAAAACAGAGactagtgctttttttttcaaaccgaGATCTAAAGTGAGGAAAGTGACAAAGTGAAGAACTCTGCTGAAGATGGGTGTAGTGTTGGGGACCTTCTCTATGCACACCAAACAGGTCACATTCAGAACAGATAAGATAGATGACGAATTAGAGATGACGATGGTCTGCCATCGGCCGGAGGGTCTCGAGCAGCTCGAGGCGCAGACAAACTTCACCAAACAAGAGCTACAGGTCCTTTACAGAGGCTTCAAAAACGAGTGTCCAAGTGGAGTGGTGAACGAGGagacatttaaacacatttatgcaCAGTTTTTTCCACATGGAGATGCAAGCACATATGCACATTATCTCTTCCATGCGTTCGACACCAGAAATAACGGATCCATAAAGTTTGAGGACTTTGTGATGGGACTGTCTACTCTCCTGAGGGGGACGGTCAGAGAGAAACTGGAATGGACATTTCATCTCTATGACATTAACAAAGACGGATTTATCAATAAGGAGGAAATGACAGAAATAGTGAGGGCCATCTATGACATGATGGGGAAGTACACGTATCCAGCTTTAAAAGGGGATGTACCAAAGCAGCATGTGGATGCCTTCTTTGAGaaaatggacaaaaacaaaGATGGAGTTGTAACATTGGAGGAGTTTGTACTTGCCTGTCAGGAGGACGAAAACATGATGAGATCCATGCAGCTCTTCGAAAATGTGATGTAGAGAAGCTCCaccagaagaagaaaagaacaaaacagagcGTGGGAAACGGAACGAAgggactttacatttaaatatatatgtgctaTATTTCACTGAGTTCTGGGGGAATATGACGGCATGAGAGGAATGAGAGTCTGTGGGCttactttttctctctctattcaAATCTTTGTAACATATTCAGTGTTGTTTCCCGCTGGTGTTTTGGGAAACTGCCAGCCCAGAATCCACTTTGATCCAGCCACGGAAGACTGCGTATGTTTGAAAGGCATTGTGCATTTCCTGAGTGAGTGGTGATGATCAACATCCTTCTTCCTTACGAAAAACAGAAAGCCACTCTCAAACAGTTTTTCATTTGCTTGACCCTAGAGCTCAGGACTCTACTTTTAGTGTACCGGAACTGCATCCGGGAGGAACGGCAGCCTCCTTTGCTTGCTTTCTTTGCCAGAAGCGCTTGCATGAGAAAAACCAGCAGACGTGTTCCCTATGAGTTGCTTGAAAATAATGCTGGCCCTCAAAATATCGAATTTCGTGATTTATTTATCTCTGCGAGGGGTTTAGAGGTTACTTAATTTGATGTTGATTCTGTCTTGTGTTGTCAGCGCTGTTTGTTAGTAATTGCTGTGTCCAGTCCGCCCACTTAATGTATGTCTACCTGTCTCAGTACTTACCAAGCCATTTATGCCCACCAGATCATAGTGAATAAGGTGGGACTGAAGGTAAAAGTCTGTGTATCCAAGTATGGATGTAAGTGAGGAGTATTAACGAAACTATAGAAACTGTATTCAATCCCAACAAATGACAATCTAGTCCCTGGATCCCCTTCTGTCCCCAGATACCTCTGCACAGTTTCAAGAAGGAGGACTGTATTtgtaagagagaaagagagagagagagcgagaaaataaaaaaaacataaatcacataataaagataaataatagttatttatgGGTCAGGGTCAGTCGTAGGACAAATAAGCTATGTATATACTTGCAAGAATGGTGCCACATGAAGAAATGTCCAATGAGGcagatacaaactgtgaaaatgaaGTATGAGAAATATGCTGTGCAATTCAAATCTCagtcaaaaatgattaaaaacatttgtggaATAACA

Function

symbol description
kcnip1b Predicted to enable calcium ion binding activity. Is expressed in heart and nervous system. Orthologous to human KCNIP1 (potassium voltage-gated channel interacting protein 1).

NR:

description
PREDICTED: Kv channel-interacting protein 1-like isoform X3

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251170.1 True 2506 mRNA 0.46 8 7450917 7483453
XM_043251171.1 False 2043 mRNA 0.43 8 7472537 7483453
XM_043251172.1 False 1954 mRNA 0.42 8 7466070 7483453

Neighbor

gene id symbol gene type direction distance location
hrh2b hrh2b,LOC107678001,LOC107552049,LOC107720559,LOC107742384 coding upstream 63923 7381076 ~ 7386994 (+)
LOC122353014 LOC107720700,LOC107552065,LOC107742369,LOC107586143,LOC107687312,LOC107682917,LOC107677962 coding upstream 78984 7362680 ~ 7371933 (+)
cbln17 LOC107720595,LOC107677995 coding upstream 88379 7361078 ~ 7362538 (+)
LOC122353122 pcdh1g33,LOC107720701,LOC103911742,LOC107677963 coding upstream 142260 7305710 ~ 7308657 (+)
LOC122353125 LOC107677985,LOC107720701,LOC107687322,LOC107586138 coding upstream 155717 7292612 ~ 7295200 (+)
npm1a LOC107678029,LOC107720694,LOC107552000 coding downstream 949 7484402 ~ 7487356 (+)
LOC122352927 NA coding downstream 49735 7533188 ~ 7538271 (+)
nlgn2b nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341 coding downstream 131951 7615404 ~ 7681744 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding downstream 211863 7695316 ~ 7708220 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding downstream 225720 7709173 ~ 7747396 (+)
G75516 NA non-coding upstream 42796 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 50884 7399428 ~ 7400033 (+)
G75513 NA non-coding upstream 51554 7398045 ~ 7399363 (+)
G75498 NA non-coding upstream 84312 7365417 ~ 7366605 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 691272 6734932 ~ 6759645 (+)
G75502 NA non-coding downstream 4022 7487475 ~ 7488567 (+)
G75574 NA non-coding downstream 198701 7682154 ~ 7682440 (+)
G75583 NA non-coding downstream 322908 7806361 ~ 7834899 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding downstream 357145 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding downstream 361766 7845219 ~ 7849236 (+)
G75496 LOC107720595,LOC107677995 other upstream 85586 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 110722 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 287694 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 300336 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 457296 6981492 ~ 6993621 (+)
si:ch211-237l4.6 NA other downstream 334357 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 377793 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 378140 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 378507 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 389086 7872539 ~ 7880100 (+)

Expression


Co-expression Network