stoml3b (stoml3b,LOC107556874,LOC107685018,LOC107720596,LOC107701117,LOC103043838,LOC108444492,LOC108277281)


Basic Information

Item Value
gene id stoml3b
gene name stoml3b,LOC107556874,LOC107685018,LOC107720596,LOC107701117,LOC103043838,LOC108444492,LOC108277281
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9395480 ~ 9399654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251191.1
ATTGTAGACAAGGCCACACCCTTCACAGGAAGTGCTTTTGCCGTACAAATACATCTCTCAGTTACTCACAAAGCCAGTGGCGTCTTTTACAAACACAGATGGAAATGGAGTCTGACATGGAACGAGGAGCCCAGAGCAAGCAGAGTCTAATCAGTGAAAGTAACGGAGGTCTGGGCTGCTGTGGGTGGATCATTGTGATTATCTCTGCATTTTTCTCCATCTTGATATTTCCAATCAGCGTTTTCATAAGCATTAAGATTGTGAAAGAGTATGAGCGTGCGGTCATATTTAGACTTGGGCGGATAACAGCTCGAAAAGCCAAAGGACCAGGAATCTTCTTCATCATTCCCTGCACGGACTCGTTTGTTAAAGTGGATCTTCGAACCATCTCATTTGACATCCCTCCCCAGGAGATCTTGACCAAAGACTCAGTGACCGTTTCTGTGGATGGTGTTGTGTACTTCCGTGTAAACGACCCCGTTGCCTCGGTGGCAAACGTGTCTAATGCAGATTACTCCACTCGCCTTCTGGCCCAGACCACCTTGAGGAACGTCCTGGGCACCAAGAACCTGTCTGAGGTCCTTTCTGACCGAGAAGGCATCTCCCAAAGCATGCAGATGACTCTAGATGAGGCCACAGATTCGTGGGGAATCAAGGTGGAGCGGGTGGAGATTAAAGACGTTAAACTGCCACAGCAGCTGCAGAGGGCGATGGCGGCCGAGGCGGAGGCGGCCCGTGAGGCCAGAGCGAAGGTTATAGCAGCGGAGGGTGAGATGAACGCATCCAGAGCTCTGAAGGAGGCGTCTCTGGTGATCGCAGAGGCTCCATCTGCCCTTCAGCTCAGATACCTCCAAACCCTCAACACCATCGCAGCCGAGAAGAACTCCACCATCATCTTCCCTCTGCCCATGGACATCATCAGCCACTTCATGAAGAAATGACCGCTGAATATTCATAAAGTGCCCAGATGCAAGCCATTCATTTAGacattttcaataattttcttctattgtgtcatgttttaaatgtcatttatcttTTACGAGAAAGAGTAGCAAGGtttacaaatgatttatttaaaaaaatacaatatcaatatactattttaaaacatactgtatatcaaTGTGTAACAACTTTCAAACggcatatttgtatatacaatAGGTATGCATGAAATGAAACTAACATTTATAGTCATTTTCAGCAATGTGAACGAACCCAACATGAGCTCTCACGTGTTTAGAGCCCAAAAAACAAGAACGTCTACGCACATAAA

Function

symbol description
stoml3b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in intestinal bulb. Orthologous to human STOML3 (stomatin like 3).

NR:

description
erythrocyte band 7 integral membrane protein-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251191.1 True 1279 mRNA 0.45 7 9395480 9399654

Neighbor

gene id symbol gene type direction distance location
hephl1b LOC107720546,LOC107685013,LOC107556850 coding downstream 106865 9277702 ~ 9288615 (-)
slc43a2b slc43a2b,LOC107684998,LOC107556870,LOC107720664,LOC107701113 coding downstream 117919 9266814 ~ 9277561 (-)
pitpnab pitpnab,LOC107556875,LOC107684996,LOC107720580,LOC107701111,LOC107592159,LOC108410689,LOC103045464,LOC108237022 coding downstream 129490 9245950 ~ 9265990 (-)
inpp5kb LOC107556871,LOC107720665,LOC107718714,LOC107592158,LOC107701109 coding downstream 150818 9235910 ~ 9244662 (-)
LOC122352888 pcyox1,LOC107562568,LOC107686458,LOC107713365,LOC107569400,LOC107688072,LOC106564891 coding downstream 815727 8574262 ~ 8579753 (-)
proser1 LOC107720660,LOC107718719,LOC107685002,LOC107701116 coding upstream 686 9400340 ~ 9407799 (-)
fgl1b si:ch211-287a12.9,LOC107556872,LOC107720659,LOC107685008 coding upstream 23291 9422945 ~ 9425337 (-)
smpd1 smpd1,LOC107720657,LOC107556869,LOC107718723,LOC107701086 coding upstream 31588 9431242 ~ 9436612 (-)
ilk ilk,LOC107720653,LOC107718724 coding upstream 38212 9437866 ~ 9453059 (-)
timm10b timm10b,LOC107556877,LOC107718791 coding upstream 55062 9454716 ~ 9457170 (-)
G76042 NA non-coding downstream 70002 9322599 ~ 9325478 (-)
LOC122352752 NA non-coding downstream 85252 9307968 ~ 9310228 (-)
G75970 NA non-coding downstream 265160 9129886 ~ 9130320 (-)
LOC122352914 NA non-coding downstream 508122 8887004 ~ 8887358 (-)
G75871 NA non-coding downstream 1135213 8230688 ~ 8260267 (-)
G76112 NA non-coding upstream 170777 9570431 ~ 9572283 (-)
G76213 LOC107557212,LOC107693892,LOC107718792 non-coding upstream 261037 9660691 ~ 9663782 (-)
LOC122352922 NA non-coding upstream 296184 9695838 ~ 9697388 (-)
G76225 LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 non-coding upstream 302338 9701992 ~ 9710708 (-)
G76229 NA non-coding upstream 317379 9717033 ~ 9717413 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other downstream 362991 8002361 ~ 9032489 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other downstream 839392 8543097 ~ 8556088 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other downstream 868033 8519666 ~ 8527447 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other downstream 999081 8318889 ~ 8396399 (-)
G75863 NA other downstream 1109562 8173349 ~ 8285918 (-)
G76068 NA other upstream 28308 9427962 ~ 9429800 (-)
cd209 NA other upstream 89676 9489330 ~ 9510430 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other upstream 172718 9572372 ~ 9625405 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other upstream 867700 10267354 ~ 10283665 (-)
G76438 NA other upstream 980442 10380096 ~ 10383309 (-)

Expression


Co-expression Network