car15 (car15,LOC107602060,LOC107758609,LOC107689182,LOC107558080)


Basic Information

Item Value
gene id car15
gene name car15,LOC107602060,LOC107758609,LOC107689182,LOC107558080
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16209748 ~ 16213685 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251192.1
ATGAGCACAGTCCGAGAAAAAATCCTGACATCCTACCTCCATTCAAGAAGATCACTACTTAAACCCCCGTTTGCTTTGCattgagtgtttttttgtggCGCGGGACCAGCGGGAACAGTCCGAGAGCGTGATGTTGCTTCTGATGCTGATGTTGATGTCCGTGGTTTCATTGGCAcgcagtgatgatgatgatgACTTCTGCTATGATGAGGAGCACTGTGATCCATATGCATGGGGTGATAGCTACCCCTCTTGCCATCCTCTTCTGGAGAGCCACCACTCTCCCATCAACCTGGATCACCCGCTGACGAAGAACCAGTCTTTAGACTCTCTGCATCTGGAAGGGTTTAACTTGACTCATAAAGGTCAATGGTGGCTGACAAACCAGGGTCACTCCGTTGTGCTGGAGCTGGGTAACGGTATGCAGGTGAGTGGCGGAGGGCTTCCTGGGATCTATCGCACCATCCAGCTGCATTTCCATTGGGGAAGCGTGTCTTCAAACGGTTCTGAACACACCTTGGACCGCCTGAGATTTCCTATGGAGATGCACATAGTCAACATCAAATCCACGCATCCAAATTTGACGTCCGCCCTCGAAGACCCAACTGGCCTTGCTGTGCTTGGAGTCTTCGTCGATGTGACGTATTTGCACAATGAAAATTTCCAGGCCATCTCCAATGCACTTCCTTCTGTCACCTACAAAGGACAAACCAAATCGATCAGACCATTTCCTTTGATAAATCTGTTACCCGAGAACAACCTAACGCAGTATTACCGTTATCACGGCAGCCTCACAACGCCGCCCTGTTCGCAGGTGGTTTTGTGGACCGTGTATGAAGTACCCATTTATATATCATGGGCTCAGTTCGAGCTGTTTGTAAAAGGGATATATTCCACGGAGGAATTAGCCGATAAACAGGTTCACCTGCAGAACAACTACAGACACATCCATCCAACCTACGGTCGGCCTGTGTATGCCTCCAAAGATGCTAAGATGCTCACCAACGGAATTCCCCCTCTTGCCATTTTCAATCTTTTTCAAGTTTGTCTATTTTTTGGCCTTttaaacatttagctttttgaATACTGCAGAACGACAGTCCACTTCAAATACCCGGAAACTACTCGGAAAGCACCACTGGTAGCCACCAGTCTAAAGACCCCTTTACCACAAGAACGGTAACGTTCTCTTGAATATAAGCGACCTGCGATTATGtgtctgtcactttaaatcCTGTGGCTGTTTAAAGATGGCGGATTATGATTGGCTGTCAATAACTGAACGCTTCAACTCgaaaaaagctgaatttgaaCGACTATTATAAACGTAGAATTATTAACGTTAGTTATCTTTAAGGCCCGTTCCCACCAATGGACTCCGATTGGATGTCGTGTCTATCAGCTGGAAATAAATAGTGAATCCAACGATAACGTTCCTCCGTCGTTATCGTTCTTTGATTTGGTCGCCATTTTCCCGGCATTAGAACGAACATTTTTAGTTAAGGTCCTTAAAatgaattgcaattaattgtagTTCACCAAGAACGACTGTGCTACTTATTTGTACGCAGAAACGAATTTTAGTAGCAATTTTGTTCACACATGTATAAACAACCCCATAGCCAGACCGCTATCGGATGAGTGATTTTTCTTAGCGGGACATCCCCTTTTACGTATTTCCCCTCATTCATATTGAACTTGATCACTCAAAGCCTTTTTCCAGTCATACACAAAAGCCACTTCGTGGTATTTAAAATGTACGGTACACTAgaaagattaaataataaaaataattaacggGAGTTTATGACCATATAAAAGCATGCACACCTATGTAGATATATCAAACTTGAACCAGTGAAGATATTCTGTGAAAACGCATACCTCAGGAGACAAACTATTTGATGTACAGTAGCAAAGTTATCGATAGTTTGACTCAAGTGCAAAGTGTTCTTTTACAAATGATAAagtgttgaaataaaaatgg

Function

symbol description
car15 Predicted to enable carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be active in plasma membrane.

NR:

description
PREDICTED: carbonic anhydrase 4-like

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251192.1 True 1987 mRNA 0.43 8 16209748 16213685

Neighbor

gene id symbol gene type direction distance location
rhof rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201 coding downstream 21788 16183854 ~ 16187960 (-)
LOC122352490 kdm2b,LOC107602054,LOC107689109,LOC107746202,LOC107558119,LOC107658591 coding downstream 39934 16146436 ~ 16169814 (-)
ggt1b ggt1b,LOC107758666,LOC107689091,LOC107602052,LOC107658554 coding downstream 114392 16081970 ~ 16095356 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding downstream 180608 16021077 ~ 16029140 (-)
rab11fip1b LOC107758672,LOC107689050,LOC107746209,LOC107583401 coding downstream 200220 15994912 ~ 16009528 (-)
dgcr2 dgcr2,LOC107689205,LOC107602057,LOC107746195,LOC107558114,LOC107658593,LOC107758577 coding upstream 3341 16217026 ~ 16227175 (-)
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 13634 16227319 ~ 16232580 (-)
stambpa stambpa,LOC107758608,LOC107658597,LOC107558102,LOC107746197,LOC107689905,LOC107602045 coding upstream 19061 16232746 ~ 16239069 (-)
dusp11 dusp11,LOC107602062,LOC107758654,LOC107689237,LOC107558079,LOC107565330 coding upstream 26491 16240176 ~ 16244033 (-)
tcf7l1a tcf7l1a,LOC107602061,LOC107558109,LOC107658535,LOC105912913 coding upstream 42594 16256279 ~ 16283760 (-)
LOC122352611 NA non-coding downstream 16208 16189534 ~ 16193540 (-)
G77936 NA non-coding downstream 29853 16178600 ~ 16179895 (-)
trnag-gcc_66 NA non-coding downstream 90726 16118952 ~ 16119022 (-)
trnag-gcc_65 NA non-coding downstream 90892 16118786 ~ 16118856 (-)
LOC122353141 NA non-coding downstream 108404 16098995 ~ 16101344 (-)
G77947 LOC107689250,LOC107689777,LOC107602036,LOC107758655,LOC107602063,LOC107758576 non-coding upstream 31970 16245655 ~ 16252193 (-)
LOC122352562 NA non-coding upstream 32968 16246653 ~ 16249749 (-)
G77979 NA non-coding upstream 137712 16351397 ~ 16353048 (-)
G77980 NA non-coding upstream 160535 16374220 ~ 16379551 (-)
G78010 NA non-coding upstream 180529 16394214 ~ 16395645 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other downstream 32637 16172478 ~ 16177111 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other downstream 152441 16030527 ~ 16057307 (-)
LOC122352931 LOC107758671,LOC107689893 other downstream 187974 16016671 ~ 16021774 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 312516 15892644 ~ 15897232 (-)
G77702 NA other downstream 851516 15357685 ~ 15358232 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 202223 16415908 ~ 16490354 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other upstream 218842 16432527 ~ 16437594 (-)

Expression


Co-expression Network