trim37 (trim37,LOC107686133,LOC107577452,LOC107691657,LOC107589414,LOC107728810)


Basic Information

Item Value
gene id trim37
gene name trim37,LOC107686133,LOC107577452,LOC107691657,LOC107589414,LOC107728810
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12884200 ~ 12900007 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251197.1
ACGGTCTCCCATGGTGACTGACATTGACATAATATATTCGCTGCTTGCTGCTGCTAGTCTATAAACAAGCGGTTTTGATGCTGCGATATctgtaaaacactaaataaatagcGTTTGATGTAGACATTCGGAGTGACGGATTTGAGGGCAACATTAAACGTGAAAGCAACCAAGATTTTGCCTTCAGATATATTCGACTGTCCGAAGTAAAACTGGCTGAAATGGATGAGCAGAGTGTTGAGAGTATAGCGGAAGTCTTCCGCTGCTTCATTTGCATGGAAAAGCTGCGCGATGCCCGTCTCTGCCCTCACTGTTCCAAACTGTGCTGTTTCAGCTGCATCCGGCGATGGCTGACTGAACAGAGAGCCCAGTGTCCCCACTGTCGAGCTCCACTTCAGCTGAGGGAACTGGTCAACTGTCGCTGGGCAGAGGAAGTGACTCAACAACTGGACACGCTGCAGCTCTGCAACCTCACAAAACATGAGGAGAACGACAAAGACAAGTGTGAGAACCATCATGAGAAGTTGAGTGTGTTCTGCTGGACTTGTAAGAAGTGTATCTGTCACCAGTGTGCTCTGTGGGGAGGCATGCATGGAGGTCATACTTTCAAACCCCTGGCCGAGATCTATGAGCAGCATGTGACAAAGGTGAACGAGGAGGTGGCCAAGCTGCGGCGCCGGCTAATGGAGCTGATTAGTCTGGTTCAAGAAGTGgaGAAGAATGTTGAGGCGGTGCGAGGGGCGAAGGATGAGAGGGTGAGGGAAATCCGGAATGCTGTGGAAATGATGATTGCTCGGCTTGATAATCAGCTCAAGAACAAACTCATCACACTTATGGGACAGAAGACCTCTCTGACACAGGAGACAGAGCTGCTGGAGTCTCTGCTGCAGGAAGTGGAACATCAGCTACGTTCGTGCAGTAAGAGCGAGCTGATCTCTAAGAGTCCAGAGATCCTGCTCATGTTCCAGCAGGTTCACAGGAAACCAATGCAGTCTTTTGTCACCACTCCTGTCCCGCCAGACTTCACCAGTGAGCTGGTCCCTGCCTATGACTCGAGCACTTTTGTTTTGGCAAACTTCAGTACTCTGCGGCAGAGAGCCGACCCCGTCTACAGCCCCCCGCTCCAGATATCAGGCCTGTGCTGGAGGTTGAAGGTTTATCCGgATGGCAATGGTGTTGTTCGAGGAAActatctctctgtttttctaGAGTTGTCTGCAGGACTCCCAGAGACATCCAAGTATGAATACAGGGTCGAGATGGTTCATCAAGCCTCCAGTGATCCCACCAAAAACATAATTCGAGAGTTCGCATCGGACTTTGAGGTGGGCGAGTGCTGGGGGTATAACAGATTCTTCAGGTTGGACCTTCTCGCCAGTGAGGGCTACTTGAATATGCAGACTGACACTCTTGTGCTCAGGTATCAGGTGCGATCACCTACGTTCTTTCAGAAGTGTAGAGATCAGTACTGGTACATAACTCAGCTGGAGTCAGCCCAGTCCAGCTACATTCAACAGATCAACAACCTTAAAGAGAGGTTAGCTATAGAACTGTTCCGTCGACAGAAGTCCAGGAGTTCCTCTCCACCTGATCAGCGTCTCTGCCCTACGACTTCTTCCGGGAGAGACTCCCGTCAAGGAAAGAGCTCCGTACTAGAGGAAGGAAGTCAGGCAGCCTCAGCAGAGACTAAagaagatgaggatgaagagAAGACCCAGCATGATGACTCTAACGAGTTGTCTGACGGGGATCTGGAGGTGGACTGTCTAACTGGAGATGAAGATGTCAATCCTTTGGATGGTAGTAGCACCTCTGGGAGCTCCACAGCCACCAGTAACACAGAGGAGAATGACATTGATGAAGAGACCATGTCTGGTGAGAATGATGTGGAGTACAGTGGAAATCTAGACCTGGAGGAAGGTGAATTACCCGATGATGTTGCCGGGGCAACAGGAGGTTCTGGTGCAGGCTCCCGTGGTTCAAGACGTGGAGCAGGTGCAAGCTCAGCCAGCCTCCTGGAGATCGACCCGGTCATCCTCATCCAACTACTGGACCTGAAGGACCGCAGCCATGTAGAGTCACTGTGGGGGATGCAGCCCCGTCCCCCAACCTCTCTCCTCCAGAGCCAAGCCGCTGCAGTGCCTTCTCGTAAAGAGCGTGAGCGTCGGCCTCAGGCAGTGCGTCGGTCTGCCCCGGATTCAGGGGTCCTGATCAGACTAAAGGCTCAGATGGCAGAAGTGCGCAGTAAGATGTCAGACGTAAAAGGACAGCTAGAGGCACGAAGCGGAGCCAGTCGCATCTCCTCTCAGGGAGCCTCAAACCACGAGCTGGGCCCCTCCATGGACTCAGAGTTGGGGCCCAGTCGCAAGCCCAGTGAACTGCTCTTCAAAGCGCCCATCTCATCACGACACTCCCGCAGTGGAGTGAAGAAGGCTGGTTCTCCTAAGCAGGAATGTGTGGGATCTCTGGGTGGACTGTCACTGCGCAGGGCTGTAGATGCTGGGGAGAAAGAGCTGAGAGGAGCTGGACGAGAATCCCCTACTGAACCTGCTCCTTGTCTCCGAGAGGGAGCCTCCTCTTTGGATGGCTCGCTGAAAGCACGCAGTGTGCAGAGTTCTCCCCCCTCGCTGGGAAGCAGCTCCTCTTCCTCTGATAAGCCCTCTGGCTCCAAACACGAGGATCTTCTGTATGGAGCTTCAGCTGCAGACCTATTCAGCGTCACAGGCCTCAATGGAGTAGCTGCTCCTGCCACCAAACAGCGCAGGACGCCAGTCGTCGGGTCTGGCCTGCTGACAGACAGCTCTCTTAACTGTGACCAAGAGGGTACCGGCGAGATCCATCAGTCACTGCTGTCACTGGCTGAaccatcctcttcctcctcacgCCCCGATGAAGGTCTCCTCAGCCAGAAGCAGCCCCACCATGTGCTGCCGAGCATGAGCAGTGACAGCGAGCTGGACTGTGACACGGAGAATGAGAACGAGGATGAGGTGGTGGCTCTGGAGGCTGGAGACTGTGCGTTTGACAGCAGAACTCTACCCTGCCCAGgcgaGCAGCTGATCCCTGATGATCTGAGCTTTGTGACCGGAGAGACCACAGAGAGATGATCCACCACAGTGTCGTCAGCCACTGAATGTGCTCTTTACATGTCTGTGCACTTTCTCACCGTTCAGAACAGGACTCTATGTTTCTGTGTGCTACTGTATGCTGTTTCAGAGAAACCACTTTTGGGATAGcaaagatttagttttttgtttcgttttgccTTGCATTTCGAAATGCATAACATTCCGTTATAAAACTAGGTGTATACATTTTGTGCGCGTGCATAACTATTCATATTACAgttctatatatttttgcaatgctGCTTATTGTCAAAATCATAGGGAGTTGCCAAACACGCATAACTTGCGTTTTCAAGTGTTTGGTACATGGAGTCAAAGAATGTCCGTACAGGTGCTGCTCCGTTACTTTTTATGTGGCTTGTTCTTGTTGTGTGCagtttatatatagatatcagtgaagtttttttttttttttttttttctccaatataTTAAGCTGTCTAGAACACAACTCATAGATTCCTTAACTTCAACATGTTTACATCGACTAAATGTCTGCAAAAAGGGAACATGGAGCCGAAACAAGTTCAAACGTTGTTCACTAAGATTGTGTTCTTTAGCATTGCACAGCTTTATTACAAGCACTTATGAACTTCTTAATGCTACATTCCCTTGtctttttgttagttttttttatttataacacgTTTACTCAAATAGAAGGTAGTTATATACTTAAACCAAAGTCTCAGGAGGGTCCAGGTCTGTGTTTGTATCTGCaggctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgagctcaGACTGAAAGCATGGATGACGTGTTCTGTTATGGCAGCAGCAGCTGGGAAATCACTCCGTTTATGTTGTGAATAGATGTCACGGCATCATCAACAGCTGGGGAGTGATGCACATACATTGAGTTGAGTTCACGGTCTTGTTCTTTGCATGCACAGCTTTCGCTCGGTACAGTCTGTTAAACATGTGACCGCTTTGTTGAAAAGCGTACAGAGAGTAATGCATCGCTTTTGCTGTTTAACTGTTGGCTTAAGAAGTGCtttatgcaaatacatttttcacttcCCCTCCAGCATGTTCTGCAAAGTGTAAAACAGTAATTGTTCCTGTGACTATTCAATGTAAATCGAATTGttttgttaggtttttttttttgtgctgtaataataatgttcctcttttgatgggtttttttttttgtttgtttgtttcatatgAGGAGCAGGAGGGCAGTCTGGTTCTCTGTGCGCATTTGTAGTTTATCGTTTATTtctttagcatgtttttaaatattttctgagGGCCCAAAACAAACTGTAGTATATGAacagtatgtactgtatatttaaataaattaaaacccAAATAAATGA

Function

symbol description
trim37 Predicted to enable tumor necrosis factor receptor binding activity; ubiquitin protein ligase activity; and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of centriole replication; protein ubiquitination; and regulation of DNA-binding transcription factor activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be active in aggresome and peroxisome. Human ortholog(s) of this gene implicated in mulibrey nanism. Orthologous to human TRIM37 (tripartite motif containing 37).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM37-like

GO: NA

KEGG:

id description
K10608 TRIM37, MUL; tripartite motif-containing protein 37

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251197.1 True 4484 mRNA 0.48 25 12884200 12900007

Neighbor

gene id symbol gene type direction distance location
atg101 atg101,LOC107751375,LOC107686213,LOC107589731,LOC107691654,LOC107577413 coding downstream 55483 12826922 ~ 12828717 (-)
umodl1 LOC107686212,LOC107728833,LOC107589724 coding downstream 66603 12807284 ~ 12817597 (-)
dgat2 dgat2,LOC107746984 coding downstream 104411 12771426 ~ 12779789 (-)
vps26bl v26bl,LOC107588734,LOC107751386,LOC107691644,LOC108423787,LOC105024202 coding downstream 374292 12505012 ~ 12509908 (-)
fez1 fez1,LOC107691643,LOC107751387 coding downstream 383351 12491670 ~ 12500849 (-)
rabgef1 rabgef1,LOC107734461,LOC107577469,LOC107728875 coding upstream 1045 12901052 ~ 12908439 (-)
kctd7 kctd7,LOC107588867,LOC107686134,LOC107734471,LOC107577526,LOC107691660 coding upstream 8564 12908571 ~ 12912532 (-)
cux1a cux1a,LOC107728840,LOC107588830,LOC107734438,LOC107691661,LOC107686135,LOC107577496 coding upstream 15176 12915183 ~ 13028810 (-)
LOC122353147 LOC107686215,LOC107588848,LOC107728832,LOC107691662,LOC101885935,LOC107578652,LOC107734424 coding upstream 136027 13036034 ~ 13051363 (-)
bcl7ba bcl7ba,LOC107691704,LOC107734433,LOC107579048,LOC107686216,LOC107728825,LOC107589759,LOC107682804 coding upstream 152107 13052114 ~ 13055376 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding downstream 3465 12796664 ~ 12880735 (-)
G76912 NA non-coding downstream 205575 12678367 ~ 12678625 (-)
G76902 LOC107746985,LOC107751382 non-coding downstream 274102 12605219 ~ 12610098 (-)
LOC122353234 NA non-coding downstream 430549 12448542 ~ 12453651 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding downstream 1117990 11701871 ~ 11766210 (-)
G77153 NA non-coding upstream 121646 13021653 ~ 13103059 (-)
G77157 NA non-coding upstream 133734 13033741 ~ 13035585 (-)
G77208 NA non-coding upstream 310609 13210616 ~ 13210946 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding upstream 413187 13313194 ~ 13315574 (-)
G77245 NA non-coding upstream 428635 13328642 ~ 13328893 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 95105 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 114783 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1299240 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 1676948 11176569 ~ 11207252 (-)
G76625 NA other downstream 1845469 11017110 ~ 11038731 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 592266 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 638149 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 743177 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 906097 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 1302255 14202262 ~ 14204127 (-)

Expression


Co-expression Network