pbdc1 (pbdc1,LOC107678025,LOC107730415,LOC107687677,LOC107705089)


Basic Information

Item Value
gene id pbdc1
gene name pbdc1,LOC107678025,LOC107730415,LOC107687677,LOC107705089
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6383021 ~ 6384513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251209.1
TGTCGTCATGACGCGTCTGCAGCTCATCCGGGTCAAAAGGCGTCAGCATGGACACAGGAGATGTTCTTGCCTCTCTGGGAGTAGAGGGAGCCACTGCGGCTGCGCACGCGCTCTCTCTTCCAGCAGAAGCGTATGGAAACGATGCCCAACTGGAAGTAATGTGGGCTATGAAAGCCTACAATCACGCAGAAGTTTACTATAATCTTATTTCCTCAGTCGATCCCAAATTTCTAAAACTAACGAAATCAGACGAGCAGATATATTCTAAATTCCGGGAAGCATTTCCTGACCTCAGTATTCAAGTTCTGGACCCGGAGCTGCTGAAGTCAGCCGATGCTAAAGAGAAATGGAGGCCCTTCTGTAACCAGTTTGATGGAGTTGTAGAGGACTTCAATTATGGTACATTATTACGTATAGACTGTCAAAAGGACTACACCGAGGAGAACACGATATTTGCGACCAGAATCCAGTTTTATGCCATCGAGATTGCGAGAAACAGAGAAGGATGCAACGACTTTGTCCACAAAGCCAATTCAAACACcaaacaacagaagaaagatGAGAGTTAATCACAACTGCTTGATGTTTGAAGTTGCCTTTTCGGTGTGGAGGAGATCTTCCTACACAAAGctaaacataaacacttatAAACGTTCTGCTTATTTTTGCCTCCTTGTGTAAAATGTAAGAGTTGGTTTCctcatttgtattaaaaagcTGGATGGTTATTCATTCAATTTTGATTTCCTTG

Function

symbol description
pbdc1 Is expressed in several structures, including immature eye; mesoderm; midbrain; musculature system; and sensory system. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1).

NR:

description
PREDICTED: protein PBDC1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251209.1 True 751 mRNA 0.43 6 6383021 6384513

Neighbor

gene id symbol gene type direction distance location
LOC122353231 LOC107730414,LOC107677976,LOC107553698 coding downstream 22366 6349220 ~ 6360655 (-)
gfra2b gfra2b,gfra2,LOC107553714,LOC107730424,LOC107705092,LOC107688392,LOC107678045 coding downstream 134945 6203578 ~ 6248076 (-)
si:ch211-127i16.2 LOC107730423,LOC107553718,LOC107678040,LOC107720686,LOC107688586 coding downstream 250508 6097588 ~ 6132513 (-)
adra1ab LOC107744166,LOC107560518,LOC107677980,LOC107720731,LOC107688401,LOC107561387 coding downstream 430181 5946254 ~ 5952840 (-)
LOC122352526 LOC107744134,LOC107678044,LOC107560524,LOC107687808,LOC107720650,LOC563710,LOC108427250 coding downstream 632555 5663458 ~ 5750466 (-)
LOC122352601 LOC107677974,LOC107720582,LOC107705076,LOC107553700,LOC107586208,LOC107688554 coding upstream 27163 6411676 ~ 6420164 (-)
LOC122352455 LOC107677991,LOC107705074,LOC107688544,LOC107720593,LOC107553699 coding upstream 75675 6460188 ~ 6487724 (-)
sfrp1b LOC107678049,LOC107687633,LOC107586121,LOC107705085,LOC107553708 coding upstream 110236 6494749 ~ 6499211 (-)
loxl2a loxl2a,LOC107720722,LOC107678026,LOC107553706,LOC107705082,LOC107687596 coding upstream 131484 6515997 ~ 6537995 (-)
tacc1 LOC107678021,LOC107553704,LOC107720721,LOC107687537 coding upstream 159055 6543568 ~ 6563433 (-)
G75294 NA non-coding downstream 580 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 30137 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 105691 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 227245 6148920 ~ 6155776 (-)
G75190 NA non-coding downstream 234512 6145846 ~ 6148509 (-)
G75366 NA non-coding upstream 261411 6645924 ~ 6648670 (-)
G75429 NA non-coding upstream 645480 7029993 ~ 7082458 (-)
G75433 NA non-coding upstream 694042 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 723245 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 743075 7127588 ~ 7148979 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 1354508 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 2470279 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 2775233 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 3005237 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 3615826 2717097 ~ 2767195 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 153609 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 243912 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 792811 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 1139681 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 1146348 7530861 ~ 7544090 (-)

Expression


Co-expression Network