cercam (cercam,LOC107744239,LOC107597609,LOC107595552,LOC107685123)


Basic Information

Item Value
gene id cercam
gene name cercam,LOC107744239,LOC107597609,LOC107595552,LOC107685123
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 1324327 ~ 1333824 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043251211.1
AACACGTTGGCTCCTCCGGGGGGAACGGAGAGTTTGAGGGGGAGTGTGAAGTTTAGGGAAGAGCCCTCTTTCCTTCGGCTGCTGACGCGGATGGGACTGTTTGTGCAACGGCGCCGAGGACCGTCGAAATCCAACCATGTTATCTTGGATCGTAAGTGTTTGGACCATTCTTGCGGTAGCGCAATGTTACTTTTCAGAGGAAAATTATACCGAAGAGTCAAAGATGCAGCCGCCCACGGTCGTTATAGCTATAATCGCGCGGAACGCCGCTCATTCTTTACCCTACTACCTCGGAGCTCTCGAGAGACTAAACTATCCCAAAGAGCGCATCTCTATCTGGGCAGCAACAGACCACAACATAGACAACACGACGGCGGTCCTGCGAGAATGGCTCACTGTCATGCAAACGCAATATCACTATATCGAGTGGAGACCTTTAGATAAACCCACGTCCTACGTAGGTGAGCTGGGGCCCAAGCACTGGACTAACAGTCGCTACGAGTACGTTATGAAGCTCAAACAGGCAGCGCTGAACTTTGCCAAGAAACGCTGGGCTGACTACATTCTGTATTCAGACACGGACAACATTTTGACGAACCCAGACACACTTGATCTGCTGATGGCGGAGAACAAGTCGGTCATCGCCCCGATGCTGGACTCCCAGTCAGCGTACTCCAACTACTGGTGTGGCATCACTCCACAGGGTTACTATCGCCGCACCGCTGAGTACTTTCCCACAAAGCAGCGTCAAAGGCAGGGCTGCTATCCCATGCCGATGGTCCACTCCACTGTTCTGCTGGACCTGCGCAAAGAAGGCACCAAGAAAGTGTCCTTTCACCCCCCTCACAAAGACTACTCCTGGCCCTTCGACGACATTATCGTTTTTGCCTTCTCTTGCCGAGTATCAGAGGTTCAGATGTATCTGTGCAACAAGGAGCGTTACGGGTATCTGAACGTCCCTGCGAAGCCTCATCAGACCGTGGAGGATGATCGGATCAATTTTATCCACCTCTACCTGGAATCTTTGATCCATGGGCCGCCGATGTACTTGTCCCGCCACGTCCACGTTCCTCCCAAACAGTCTGATCTCATGGGCTTTGATGAGATCTACTTGATAAACCTGCGCAGACGTCTGGACCGCAGGGACAGGATGCTGTGGTCACTTTACGAGCTGGAGATCGATGCCAAAGTTGTGGATGCTGTGGACGGAGCGGCTCTGAACAGCAGCGATATTAAGATTCTGGGTGTCGATCTCTTACCTGGTTACTATGACCCTTTCTCCGGCCGCACGCTGACCAAAGGAGAGGTGGGCTGCTTCCTCAGCCACTACTACATCTGGAAAGAGATGGTCGACATGCAGCTGGATAAAGCGCTGATCTTTGAGGACGACGTTCGTTTCCAAGCCAACTTCAAACGTCGCCTGATGCGGCTGATGGAGGAGGTGGAGCAGGTGGAGCTGGACTGGGACATCATATACCTGGGCAGGAAGAAGGTGTACCTCGAAGAGGAAGTGGCGGTGGAGAACGTGAGGAACCTGGTGTACGCCGATTACTCTTACTGGACGCTGTCTTACGCCATCTCTCTTCAGGGAGCTCAGAAACTCCTCAACGCTGAACCCATCTCCAAAATGCTTCCTGTGGATGAGTTTCTGCCCATCATGTATGACAAGCACCCCAACGAAGACTACAAATCCCATTTCCCCAATCGGAATCTGATGGCGTACTCCACACAGCCCCTTCTGGTGCAGCCCTGCCATTACGCCGGGGACCCGGAGTGGGTGAGCGACACGGAGACCTCCACGCTGTGGGACGACGACAGCGTCCGGACGGACTGGAGAGGCTCGCACAAGACTCTGAAGGGTTCTCAGCCGCCGGCCGGCTTGCAGAGCGCCACCTACAAGGACGAGCTGTGAAGCGCAGCCCCCAAGACCCCGGACCTGGGGCCAGGCACTCCACGGCTACACTAATCAGGGTTTCTCGGGTTttccagctgaaaaaaaaatacaagatgcatttacttagcaaaataaatatagaccATATTAAGATATGTTTTCATGCTAGCAGTGAGAAATGCaacttttattgcaaaaaaaaagaacaaggcAATTGGGTGCAATACATTAGATGACTTCTATTTGATTCAACAGGAAGaacttttattataaatttttctATTTCTTGAACTGTATAAAAAGGACATTCGATAGCCGTTATGGAAGTGGTGCGTTATGAATGTTATTAGTGGATGTCATGCTCAGACAAACAGAGCTTAGTGTATATGAGATATGGTGTGCGTGGAAGACGTTTTTGGTGAGTTTTTGCTGTTCGTTTCTCTGTTCCCATCGTAATCatttgttcttatttatttctcttccCTGTCTTATTCCCTTCTGTGTCGCTCCAAACTGAACAGCAGGACCGAACGAATAAGAGTATGCACGgcagttattgttgtttttgaaataaaaaaagaaagttttttggaaaaaaaaaaa
>XM_043251212.1
CCGGGGGGAACGGAGAGTTTGAGGGGGAGTGTGAAGTTTAGGGAAGAGCCCTCTTTCCTTCGGCTGCTGACGCGGATGGGACTGTTTGTGCAACGGCGCCGAGGACCGTCGAAATCCAACCATGTTATCTTGGATCGGCAGCAACAGACCACAACATAGACAACACGACGGCGGTCCTGCGAGAATGGCTCACTGTCATGCAAACGCAATATCACTATATCGAGTGGAGACCTTTAGATAAACCCACGTCCTACGTAGGTGAGCTGGGGCCCAAGCACTGGACTAACAGTCGCTACGAGTACGTTATGAAGCTCAAACAGGCAGCGCTGAACTTTGCCAAGAAACGCTGGGCTGACTACATTCTGTATTCAGACACGGACAACATTTTGACGAACCCAGACACACTTGATCTGCTGATGGCGGAGAACAAGTCGGTCATCGCCCCGATGCTGGACTCCCAGTCAGCGTACTCCAACTACTGGTGTGGCATCACTCCACAGGGTTACTATCGCCGCACCGCTGAGTACTTTCCCACAAAGCAGCGTCAAAGGCAGGGCTGCTATCCCATGCCGATGGTCCACTCCACTGTTCTGCTGGACCTGCGCAAAGAAGGCACCAAGAAAGTGTCCTTTCACCCCCCTCACAAAGACTACTCCTGGCCCTTCGACGACATTATCGTTTTTGCCTTCTCTTGCCGAGTATCAGAGGTTCAGATGTATCTGTGCAACAAGGAGCGTTACGGGTATCTGAACGTCCCTGCGAAGCCTCATCAGACCGTGGAGGATGATCGGATCAATTTTATCCACCTCTACCTGGAATCTTTGATCCATGGGCCGCCGATGTACTTGTCCCGCCACGTCCACGTTCCTCCCAAACAGTCTGATCTCATGGGCTTTGATGAGATCTACTTGATAAACCTGCGCAGACGTCTGGACCGCAGGGACAGGATGCTGTGGTCACTTTACGAGCTGGAGATCGATGCCAAAGTTGTGGATGCTGTGGACGGAGCGGCTCTGAACAGCAGCGATATTAAGATTCTGGGTGTCGATCTCTTACCTGGTTACTATGACCCTTTCTCCGGCCGCACGCTGACCAAAGGAGAGGTGGGCTGCTTCCTCAGCCACTACTACATCTGGAAAGAGATGGTCGACATGCAGCTGGATAAAGCGCTGATCTTTGAGGACGACGTTCGTTTCCAAGCCAACTTCAAACGTCGCCTGATGCGGCTGATGGAGGAGGTGGAGCAGGTGGAGCTGGACTGGGACATCATATACCTGGGCAGGAAGAAGGTGTACCTCGAAGAGGAAGTGGCGGTGGAGAACGTGAGGAACCTGGTGTACGCCGATTACTCTTACTGGACGCTGTCTTACGCCATCTCTCTTCAGGGAGCTCAGAAACTCCTCAACGCTGAACCCATCTCCAAAATGCTTCCTGTGGATGAGTTTCTGCCCATCATGTATGACAAGCACCCCAACGAAGACTACAAATCCCATTTCCCCAATCGGAATCTGATGGCGTACTCCACACAGCCCCTTCTGGTGCAGCCCTGCCATTACGCCGGGGACCCGGAGTGGGTGAGCGACACGGAGACCTCCACGCTGTGGGACGACGACAGCGTCCGGACGGACTGGAGAGGCTCGCACAAGACTCTGAAGGGTTCTCAGCCGCCGGCCGGCTTGCAGAGCGCCACCTACAAGGACGAGCTGTGAAGCGCAGCCCCCAAGACCCCGGACCTGGGGCCAGGCACTCCACGGCTACACTAATCAGGGTTTCTCGGGTTttccagctgaaaaaaaaatacaagatgcatttacttagcaaaataaatatagaccATATTAAGATATGTTTTCATGCTAGCAGTGAGAAATGCaacttttattgcaaaaaaaaagaacaaggcAATTGGGTGCAATACATTAGATGACTTCTATTTGATTCAACAGGAAGaacttttattataaatttttctATTTCTTGAACTGTATAAAAAGGACATTCGATAGCCGTTATGGAAGTGGTGCGTTATGAATGTTATTAGTGGATGTCATGCTCAGACAAACAGAGCTTAGTGTATATGAGATATGGTGTGCGTGGAAGACGTTTTTGGTGAGTTTTTGCTGTTCGTTTCTCTGTTCCCATCGTAATCatttgttcttatttatttctcttccCTGTCTTATTCCCTTCTGTGTCGCTCCAAACTGAACAGCAGGACCGAACGAATAAGAGTATGCACGgcagttattgttgtttttgaaataaaaaaagaaagttttttggaaaaaaaaaaa

Function

symbol description
cercam Is expressed in several structures, including central nervous system; neural tube; notochord; otic vesicle; and pectoral fin musculature. Orthologous to human CERCAM (cerebral endothelial cell adhesion molecule).

NR:

description
PREDICTED: procollagen galactosyltransferase 2

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043251211.1 True 2497 mRNA 0.50 12 1324327 1333824
XM_043251212.1 False 2294 mRNA 0.50 12 1324342 1333824

Neighbor

gene id symbol gene type direction distance location
urm1 urm1,LOC107685124,LOC107686415,LOC107595551,LOC107597610 coding upstream 14293 1300479 ~ 1310034 (+)
sh2d3ca sh2d3ca,LOC107597612,LOC107744235,LOC107686416,LOC107685125,LOC107595550,LOC107713320 coding upstream 28318 1251019 ~ 1296009 (+)
LOC122352732 rabgap1,LOC107744072,LOC107686418,LOC107685165 coding upstream 212153 1042039 ~ 1112174 (+)
rc3h2 rc3h2,LOC107595546,LOC107685128,LOC107597668,LOC107713325,LOC107686479 coding upstream 283383 1018345 ~ 1040944 (+)
si:ch211-243g18.2 si:ch211-243g18.2,LOC107744167,LOC107686498,LOC107713290,LOC107685187,LOC107597669 coding upstream 313452 1001075 ~ 1010875 (+)
sardh sardh coding downstream 1587 1335411 ~ 1390318 (+)
fam163ba fam163b,LOC107597608,LOC107595554,LOC107713289,LOC107685121,LOC107658661,LOC107744266 coding downstream 76657 1410481 ~ 1432107 (+)
swi5 LOC107713318,LOC107685186,LOC107595581,LOC107658658,LOC107597663,LOC107744259 coding downstream 106799 1440623 ~ 1444264 (+)
slc27a4 slc27a4,LOC107658662,LOC107744240,LOC107685116,LOC107713315 coding downstream 111458 1445282 ~ 1463857 (+)
ptgdsa LOC107744241,LOC107658663,LOC107597660 coding downstream 130162 1463986 ~ 1466535 (+)
G73766 NA non-coding upstream 183668 1140349 ~ 1140659 (+)
G73760 NA non-coding upstream 197861 1117113 ~ 1126466 (+)
G73763 NA non-coding upstream 207938 1116133 ~ 1116389 (+)
G73732 NA non-coding upstream 404834 917796 ~ 919493 (+)
G73739 NA non-coding upstream 416674 906316 ~ 907653 (+)
G73888 NA non-coding downstream 58324 1392148 ~ 1392465 (+)
G73889 NA non-coding downstream 60631 1394455 ~ 1394784 (+)
G73904 NA non-coding downstream 154419 1488243 ~ 1488680 (+)
G73905 NA non-coding downstream 156394 1490218 ~ 1490490 (+)
G73906 NA non-coding downstream 156700 1490524 ~ 1490828 (+)
LOC122352734 LOC107744074,LOC107597614,LOC107686419,LOC107685127,LOC101884949,LOC107713324,LOC107595548 other upstream 240288 1077696 ~ 1084039 (+)
rbm18 rbm18,LOC107597621,LOC107595545,LOC107685132,LOC107686423 other upstream 378467 934069 ~ 945860 (+)
fstb fstb,LOC107685190,LOC107713293,LOC107686430,LOC107744087,LOC107597631,LOC107595577 other upstream 522404 796011 ~ 801923 (+)
pmaip1 NA other upstream 549953 683106 ~ 774374 (+)
G74226 sh3bp2,LOC107743173,LOC107705055 other downstream 777372 2111196 ~ 2111694 (+)
G74171 NA other downstream 860273 2194097 ~ 2200467 (+)
smad2 smad2,LOC107743055,LOC107653131 other downstream 897598 2231422 ~ 2250897 (+)
cntfr cntfr,LOC107554853,LOC107738850,LOC107756542,LOC107554231 other downstream 1255272 2589096 ~ 2705724 (+)
il11ra LOC107756541,LOC107554229,LOC107750187,LOC107653503 other downstream 1444035 2777859 ~ 2780475 (+)

Expression


Co-expression Network