LOC122352521


Basic Information

Item Value
gene id LOC122352521
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11026069 ~ 11044853 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251883.1
TTAGTACCCATCTACACGGGTCATTTATAGACAGGTGCATGCATTAACAGCAGCCTGTCTATTCGTACAATTAGGGCCCAAACTTTTATCTAGGCACTTTTAATTCTTTACTCTTTTAAACCCCAGAGACCCAGCCTAATTTAAGACAGTGTAAAGAAGCTTTGAAACCAGACACTGTTTTTTGGCCTGGCCTCTCATGGTTTTACACCCTCACTGTACCCCTGGGAGAGCAGGTGTGCTGTGGATTGTGTAAGACTTAAACTACTGACAAAATGTTCTTGATTCTGACATTCGAGATTGTCTTACCTGCtggttctttttttgtttatccaGGCTGCCGTTCATCTGCTGTGACACCAGCAGTGAAGGTTATTCTTTCCCAGTGAAGGACTGCGTGAAATAGAAAGTTTAGCACAATCTCAGAGAAGATCGCATCTACTTTTACTATATGGAGAAGTGCAGCATTACTGCTTTgctaaatatctccttttgcttagGTGCATGATTGTCTAATGAGATGGCTGAAAATGGGACAGATTTGAAGTTTCCTTGAAGAAGAGTGGGACTGTGGGACCAGCACAATCAGAGCTCTGGAAAGACAGCGTCTTCACAGCTATCGGCTCACGTGAGTGACTCTCCACCAAACCACCCCACACTGACCAGATCTGCAGAAAACTCGCAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251883.1 True 685 lncRNA 0.44 4 11026069 11044853

Neighbor

gene id symbol gene type direction distance location
med13a med13,LOC107693951,LOC107744626,LOC107699258,LOC107747042,LOC107548827 coding downstream 80354 10892793 ~ 10945715 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027,LOC107693886 coding downstream 134305 10873812 ~ 10891764 (-)
auts2a auts2,LOC107693947 coding downstream 263172 10481653 ~ 10762897 (-)
cnih2 cnih2,LOC100706298,LOC107718764,LOC107091387 coding downstream 627845 10390116 ~ 10398224 (-)
LOC122352948 LOC107693944,LOC107548866,LOC107720609 coding downstream 641421 10383532 ~ 10384648 (-)
cltca cltca,cltc,LOC107548879,LOC107744621 coding upstream 1554 11046407 ~ 11079418 (-)
LOC122352515 ddx56,LOC107733287,LOC107751685 coding upstream 36786 11081639 ~ 11138691 (-)
btg3 btg3,LOC107699262,LOC107744619,LOC107747057,LOC107693957,LOC107548882,LOC107578493 coding upstream 100532 11145385 ~ 11149832 (-)
LOC122352533 LOC107747056,LOC107693900,LOC107548843,LOC107548828 coding upstream 106258 11151111 ~ 11158734 (-)
LOC122352716 LOC107576779 coding upstream 123272 11168125 ~ 11172314 (-)
G76632 NA non-coding downstream 31643 10994218 ~ 10994426 (-)
G76622 NA non-coding downstream 38834 10959936 ~ 10987235 (-)
LOC122353057 NA non-coding downstream 75602 10947032 ~ 10950467 (-)
G76618 NA non-coding downstream 153982 10871806 ~ 10872087 (-)
G76489 NA non-coding downstream 565670 10436192 ~ 10460399 (-)
G76627 NA non-coding upstream 42733 11087586 ~ 11091061 (-)
G76642 NA non-coding upstream 52110 11096963 ~ 11110835 (-)
G76657 NA non-coding upstream 173316 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding upstream 189519 11234372 ~ 11235690 (-)
G76693 NA non-coding upstream 441053 11485906 ~ 11486428 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 42331 10972881 ~ 10983738 (-)
G76498 NA other downstream 545880 10478059 ~ 10480189 (-)
G76438 NA other downstream 642760 10380096 ~ 10383309 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other downstream 742404 10267354 ~ 10283665 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other downstream 1400664 9572372 ~ 9625405 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other upstream 131716 11176569 ~ 11207252 (-)
ccdc83 NA other upstream 460457 11505310 ~ 11584960 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 1634137 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1737500 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 2447420 13492273 ~ 13533064 (-)

Expression


Co-expression Network