LOC122352573


Basic Information

Item Value
gene id LOC122352573
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15831207 ~ 15831926 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251889.1
CTGGGAAGTTCACCGTTCAAGTCATACCATGGCACACCAGAGTACTCTCCTCCTGAGTACCACCGCAGGGGAGAGTACCAAGGCTGGCCGGCGACGGTCTGGTCACTAGGGATTGTAATGTTCACATTGTTGTGTGGAGATTTCCCTAGTTACCAGGACCTGCTCCTGCTGGAGCACAACAAGTGGTCCAAACCTGGCCTGTCACAGGAATGCTGTGACTTACTAAGGGTTCTTCTCCACGAGAAGCCAATCCGGCGACTTGGTCTGGGGCAAATCAGGTCCCACAACTGGTTTATGgtCGTCTTATAGGACCACTCCGGTTGGCGCCTCTCTTGCAGCTTTGCGTCTTGCGGGCTGCAGCGGGAGGTGCTTTCATC

Function

GO:

id name namespace
GO:0021546 rhombomere development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0048859 formation of anatomical boundary biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251889.1 True 377 lncRNA 0.55 4 15831207 15831926

Neighbor

gene id symbol gene type direction distance location
LOC122353239 taar16f,LOC107758680,LOC107583443,LOC108191509,LOC107558088 coding downstream 9220 15820992 ~ 15821987 (-)
LOC122353102 LOC107558094,LOC107658523,LOC107730955,LOC107558078,LOC107558105,LOC107658550,LOC103911781 coding downstream 22150 15805107 ~ 15809057 (-)
LOC122353177 LOC107658523,LOC107730955,LOC107558094,LOC107558105,LOC107558078,LOC107658550,LOC103911781 coding downstream 30443 15799790 ~ 15800764 (-)
LOC122352370 LOC107558105,LOC107658550,LOC107658523,LOC107730955,LOC107558078,LOC107558094,LOC108191508 coding downstream 33671 15796544 ~ 15797536 (-)
LOC122353203 LOC107558078,LOC107658523,LOC107730955,LOC107558094,LOC107558105,LOC107658550,LOC108191508 coding downstream 56334 15773887 ~ 15774873 (-)
LOC122353200 pim3,LOC107732271 coding upstream 3170 15835096 ~ 15838380 (-)
LOC122352473 pim3,LOC107732271 coding upstream 15863 15847789 ~ 15849992 (-)
pcna pcna,LOC107658578,LOC107583397,LOC107688976 coding upstream 30251 15862177 ~ 15864530 (-)
bmp1b LOC107688986,LOC107758677,LOC107583398,LOC107746216,LOC107658580,LOC107558131 coding upstream 40564 15872490 ~ 15890490 (-)
aak1b aak1b,LOC107583399,LOC107746214,LOC107658583,LOC107689018 coding upstream 100029 15931955 ~ 15958445 (-)
LOC122352661 NA non-coding downstream 3651 15827084 ~ 15827556 (-)
G77715 NA non-coding downstream 183344 15644403 ~ 15647863 (-)
G77706 NA non-coding downstream 436655 15392088 ~ 15394552 (-)
G77703 NA non-coding downstream 462531 15368401 ~ 15368676 (-)
G77700 NA non-coding downstream 483918 15345000 ~ 15347289 (-)
LOC122352641 NA non-coding upstream 7587 15839513 ~ 15840066 (-)
LOC122352598 pim3,LOC107732271 non-coding upstream 8425 15840351 ~ 15842537 (-)
LOC122353197 NA non-coding upstream 70961 15902887 ~ 15912782 (-)
LOC122353198 NA non-coding upstream 83122 15915048 ~ 15917942 (-)
G77827 NA non-coding upstream 88995 15920921 ~ 15921360 (-)
G77702 NA other downstream 472975 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 541535 15229969 ~ 15289672 (-)
G77671 NA other downstream 723455 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 1241308 14568330 ~ 14589899 (-)
im:6904045 NA other downstream 1345915 14484799 ~ 14485292 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 60718 15892644 ~ 15897232 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 184745 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 198601 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 340552 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 583982 16415908 ~ 16490354 (-)

Expression


Co-expression Network