LOC122352598 (pim3,LOC107732271)


Basic Information

Item Value
gene id LOC122352598
gene name pim3,LOC107732271
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15840351 ~ 15842537 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251891.1
GGGAGCTCTCGCGAGAGGTTTACTGTCTTTGAGAGGAGCATCACGCGCGAGGAGAGCATCGCTTCAGCGTTTGGTTTATCACCGTGAGACACACAGCACTCAGAATGAACAGaCTACATCTTCAGCCGTTACGCTGTGGGTGAGCAGCTGGGCAAAGGTGGATTTGGTGTGGTGTACGAAGGTACACGTCTGGAGGATAATCTTAAAgTGGCTTTGAAATACGTCACAAAGACAGAGCACATGGAATGTATATCAATTCCTGATCATCCAGACCCTCTCCCAAAAGAGATTGCCCTCACTATCATGGCGAATAAAGGTCACAGAGTGCCAGAAATCATCAGACTGCTGGACTGGACGGATCACTCTGACCACTACGTCATGGTCCTGGAATGTCCCTCTCCCTGTGAGAATCTGGTTGAGTTCATCAGGCGTCACGGTGGAAGCTTGGACGAGGAGAAAACACGGCAGATCATGTGGCAG

Function

symbol description
pim3 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Orthologous to human PIM3 (Pim-3 proto-oncogene, serine/threonine kinase).

NR:

description
PREDICTED: serine/threonine-protein kinase pim-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251891.1 True 480 lncRNA 0.50 4 15840351 15842537

Neighbor

gene id symbol gene type direction distance location
LOC122353200 pim3,LOC107732271 coding downstream 1971 15835096 ~ 15838380 (-)
LOC122353239 taar16f,LOC107758680,LOC107583443,LOC108191509,LOC107558088 coding downstream 18364 15820992 ~ 15821987 (-)
LOC122353102 LOC107558094,LOC107658523,LOC107730955,LOC107558078,LOC107558105,LOC107658550,LOC103911781 coding downstream 31294 15805107 ~ 15809057 (-)
LOC122353177 LOC107658523,LOC107730955,LOC107558094,LOC107558105,LOC107558078,LOC107658550,LOC103911781 coding downstream 39587 15799790 ~ 15800764 (-)
LOC122352370 LOC107558105,LOC107658550,LOC107658523,LOC107730955,LOC107558078,LOC107558094,LOC108191508 coding downstream 42815 15796544 ~ 15797536 (-)
LOC122352473 pim3,LOC107732271 coding upstream 5252 15847789 ~ 15849992 (-)
pcna pcna,LOC107658578,LOC107583397,LOC107688976 coding upstream 19640 15862177 ~ 15864530 (-)
bmp1b LOC107688986,LOC107758677,LOC107583398,LOC107746216,LOC107658580,LOC107558131 coding upstream 29953 15872490 ~ 15890490 (-)
aak1b aak1b,LOC107583399,LOC107746214,LOC107658583,LOC107689018 coding upstream 89418 15931955 ~ 15958445 (-)
brf2 LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650 coding upstream 147056 15989593 ~ 15993972 (-)
LOC122352641 NA non-coding downstream 285 15839513 ~ 15840066 (-)
LOC122352573 NA non-coding downstream 8425 15831207 ~ 15831926 (-)
LOC122352661 NA non-coding downstream 12795 15827084 ~ 15827556 (-)
G77715 NA non-coding downstream 192488 15644403 ~ 15647863 (-)
G77706 NA non-coding downstream 445799 15392088 ~ 15394552 (-)
LOC122353197 NA non-coding upstream 60350 15902887 ~ 15912782 (-)
LOC122353198 NA non-coding upstream 72511 15915048 ~ 15917942 (-)
G77827 NA non-coding upstream 78384 15920921 ~ 15921360 (-)
G77830 NA non-coding upstream 84649 15927186 ~ 15927498 (-)
G77831 NA non-coding upstream 85555 15928092 ~ 15928317 (-)
G77702 NA other downstream 482119 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 550679 15229969 ~ 15289672 (-)
G77671 NA other downstream 732599 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 1250452 14568330 ~ 14589899 (-)
im:6904045 NA other downstream 1355059 14484799 ~ 14485292 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 50107 15892644 ~ 15897232 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 174134 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 187990 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 329941 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 573371 16415908 ~ 16490354 (-)

Expression


Co-expression Network