CI01000000_13599770_13622506


Basic Information

Item Value
gene id CI01000000_13599770_13622506
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 13599380 ~ 13622506 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_13599770_13622506.mRNA
ATGTTCTGGAGGACGATAGTGGCCACCTTTCACTTGTGGTTCTGGATGGTGAGTATGGGCCCTGCTAGAGCTTCAGGCCCTGCTGAGGGAGCGTCATGCTGGGGTGGACGACCCTGGGCTGCTGGGAACTTCAGCTGTGTGGATCCTGAGCCTTATCTCTTACTTGGCCTTGGAAATGGCATCCATAGGATGAACCTTGATGGTGGGGACCAGAGAAGGATCGTATCTAGGGTGGGAAGGTCTATCTTGTTAGACTTCCATTTAAGTGAGGGGACAATGTTTTGGGCTGACACACATGCAGGACAAATCAACAGGGCAGGACTGGATGGAACAGGCAGACAGGAACTTCTCTCATCAGTGAAAAGAATCACAGGTCTGGCTGTGGACTGGATTGAAAACTCAGTCCTCTGGAGCAATGCAGATAAAGGATCGATACACAGAATGGACACAGATGGGAGGAATGAAAAGACTGTCTTGAGAGACCTTTCTCAGCCCAAAAGTGTTGTTATTGATCCAAATGAGAGATATATTTTCTGGTTGTCAGATGGAGTGACTCCCAGTATCCAGCGTTCAGACGTGACAGGTGGGAAGAAGGTGACAGTGCTGAAAGTTGCAGACAGACTAAAGGTTCTGACAATAGACCACCGGGACAGGAGACTGTTCTGGGTTCAGCAAGGCCAAGGAGGGCTCACTGCAATGGGCTCCTGCAACTATGATGGCAACATTATCAACGTCTTTAATCAGCCCTTCAGACCACAGGCTCTGAGGATGACGATTTTCCTGGATTATGTGTACCTAACAGACTTTAAGTCAAAAAGAATAATACGGGTAAACAAGTACACAGGGGGCCGAGGGGAGAATGTCAATTCCAAAAGGATGCCGCACCCCCCTGCTGATGTCAAAGTGGTACATCCCATCAATCAGCCGGTGGTGGAAATTCCAACTCCATTTAATCCAGGCTGCAGTCGACACACAGGAGAGTGTGTGAAAGTGTGTTCCAGTCCCAGTGACACCGGTCCTTGCCGCTGCAGGGATGGTTTTTCCCTCAGTAAACAAGGCAACTACTGTGAAGATATCAATGAATGCGCCCTGTGGAATCACGGCTGCTCACTGGGATGTGAGAACGTCCCGGGCTCTTACTTCTGCACCTGCCCTAAGGGTTACCTGTTACTGCCCGATTTGAAGACCTGCCAAGAGACTAAACCATGTGTGGAGAATGGTACAGTTTGTGATCATGGATGTGTACATACAGCAGAAGGAGATGTGTGTGTGTGTCCAGAGGGATCTGTGCTAAATTCTGATGGCCGTTCATGCACAGGCTGTTTGTCTGCGAATCGGGGGGGCTGCAGTCAGTTGTGTGTGACTTTATTTCCAGGCAGGTGGGTGTGTGAGTGCCAGCCTGGATACCAGCTACAGCCGGATGGCAAACACTGTGCTGCCACAGGCGAGTCCTACAAACTTTTATATTCTACATTCTGCCAGGGACCTCCATCGTACCTGTTGTTTGCCAATGTAGTGGATATAAGAAAGATTAACACAAATGGCAAACAGAGCAGAAAACTGCTGGAGGAGCCGAAAGGCACTATCATTGCTGTGGATTATGATCCAGTGCAGAAAAGGATGTATTTTGCAGATAAAGGCCTGAAGCGTATTGAGAGGGCTTCACTGGATGGAGGCTTCAGAGAGATGCTGTTCTCCACTGGACTCGACTCACCCGAGGGTCTGGCTGTAGACTGGGTCCATCGCAAGCTATACTGGACTGATAGAGGGTGGGCTGCAGACGAATACAGACACACTTTCTTAAAAACGTACTTATTTGACTTTAACATTCTGCTTTTCAGATTATCCTCTATTTCCCGCAGCAGTTTAAATGGCCTTGACAGGGAGATTTTTATAGATAAAGACATCCAGAAACCCAGAGGCATTGCCCTACATCCTCAGGCACAGAAGGTATATTGGACAGACATGGGTAGTCGTCCTGCAGTGGAGCGGTCAGGTCTGAACAGAGAGATGCGTGAAGTTGTGGTCAGCACCGGTCTGGTGTCTCCTAGTGGACTAGCTGTGGATCACGGCTCCCAGCATCTGTACTGGTGTGACCTGAGCAGAGGTGTGATTGAGTCAGCCAAGCTGGATGGTTCAAATCGCCATATACTAAGTGAAAACCAAGTAGGTCACCCGTTTGACGTTGCAGTATTTGAGAATGTGCTCTGGGTCAGTGACTGGGAGGGTCACCTGCTTCACCGGCTAGACATGAGAACTGGACGAAACCTTGAACATGTCCATGATGACACTATCCAACCAGCTGCTCTGGCTGTTGTCCACCCTCTTGCCAAACCGGGAGCGGATGTTTGTCTTCATGAAAATGGAGGATGTGCCCAAGTGTGTGAGAGCAGACTGGGATTGGCTCATTGCTCATGTCACTCAACACACATTCTTTCAGCTGATGGAAAAGACTGTCTGGCGATTAATACATCATTCACTGAATCAGATGACGGTGAATCAAGTGATCGTCTGAGAAATAAAACACTGAATGATGAGAGCACACCACTGGCCATGATTTACACAGAGAAGATGATTTCAGACCAAGATGACTGCTACTCTCTCAGATGTGATGCGAACGCTCAGTGTGTGCTGCAGGAGGACCGAGCCGTGTGTCAGTGTGTGAGAGGTTTCACCGGAGATGGAGAACTGTGTGTGGACGTTGATGAATGCAAAGCAGGCCTGGCAGATTGTAGTGTTTCTGAGGCTGAGTGTATGAACACAGCAGGTGGATATTTCTGCCAATGCAAGACTGGATTCAGTGGAGATGGTCAGCACTGTATGGATATAGATGAGTGCAGACTGAATATGCACGATTGCGATGTAAACGCAGAGTGTTTGAATGCTGTAGGAAAATATCAGTGTAGATGCCGATCTGGGTTCACAGGCACTGGATTCAGCTGTCAGGAGAAGTCTAAGGGCGCCCCCTCTTGGCCGAGTACGGGCAGTCCACTTGATGTCACATCGCCATGGCAACACAATAACGTTGTGCAGAGCTGCCCTTCCACTCATGACTCGTACTGTCTGTATGATGGAGTGTGCTTCTATTTCCCTGAGATGGAGTCTTATGCCTGCAAGCAAGTCTGTGCATTAGGCTACATGGGGGAGCGCTGTCAGTTCAGTGATCTTGAATGGTGGGAGTTGCAGCAGGCTGAAGAAGAGAAGAGGAGGAATATGGCTATCGCAATGTGTATTGTGCTCTTCATCACTCTTCTGTCCATCGCTGCCTGCATCACTTACTGCTATGGGTCTAAAAAACATTTTGCAACATGTCCCTCAGAGGATGATGTGGGTGACATAAGCATGAGTGAGGACAGTTTCACTGAGACAACAACAACCACTCCACAAGTCTATGTAGTTTTGGACACCTCTCCCTGCGGTGATGAAAAGGTCCTTCATGTTGTAGGGTGTCCCAGAGCAACAATATTCCACTCTTGCTCTTCAGACGCCGGAGACAGTTTTGCTTCAGAAGAGACTGAGAAGCTACAGAGAGACAACTGTAGTCTGGATGTTGCCAACTGCTCTGTATCCTGCGATGTGCACAAATTTCTGGTTACAGAGAAGGCCACCGATAATCTCATCTCCTTAGAAGACCCTCAGGCAGCACCCCAG
>TU9911
AGAAGACCCTCAGGCAGCACCCCAGTGATTCACCACAAAAATACTTCATTGGTGGCTGACCCATGAACTGCTAATGTCAATATGTTCAATGTTCAAAGTCACTGTCATTCAGTGTTACAGTACAGTCAAATATGGGACAGCATTCAAAACGAGGTTGTTTGAACAAGTTTCCACATTCAAGTTGCACCAGTTATTTGTCAACATTTCATACAATTCAAGTGAAATGTTACTCCTGGTCAGATATAAATATGCCAGTCATGCTCACATCAGCTGACTCTCAGCTGATCCATGTCTAGCTATAGGAATACAAAGTCTATCACAGCATCCAAATATACAGTATAAGGTCCACTCAGTATTATTAGCAGCTTTATCGCGTTGCTCAGGAGATAATAGCCCTCGTCCATCCCCAGCTCCT

Function

NR:

description
Egf protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_13599770_13622506.mRNA False 3651 mRNA 0.49 23 13599770 13622506
TU9911 True 415 lncRNA 0.41 1 13599380 13599794

Neighbor

gene id symbol gene type direction distance location
CI01000000_13587788_13588280 NA coding downstream 11490 13587403 ~ 13588280 (-)
CI01000000_13360123_13365788 TMEM144 coding downstream 233982 13360123 ~ 13365788 (-)
CI01000000_13350939_13358816 FAM198B coding downstream 240954 13349956 ~ 13358816 (-)
CI01000000_13152692_13175605 PDGFC coding downstream 424165 13151625 ~ 13175605 (-)
CI01000000_13117207_13118382 MRPL18 coding downstream 481388 13115994 ~ 13118382 (-)
CI01000000_13625996_13633130 LRIT3, LRIT3A coding upstream 3207 13625713 ~ 13633130 (-)
CI01000000_13641099_13651719 GPM6AA, DMB, GPM6A, GPM6AB coding upstream 18166 13640672 ~ 13651719 (-)
CI01000000_13672975_13675416 SPATA4 coding upstream 50376 13672882 ~ 13675416 (-)
CI01000000_13676092_13680653 ASB5A coding upstream 53405 13675911 ~ 13680653 (-)
CI01000000_13689569_13694664 AGA coding upstream 67063 13689569 ~ 13694664 (-)
G8997 NA non-coding downstream 2172 13597168 ~ 13597598 (-)
G8982 NA non-coding downstream 41530 13554305 ~ 13558240 (-)
G8758 NA non-coding downstream 184519 13414805 ~ 13415251 (-)
G8737 NA non-coding downstream 219927 13379643 ~ 13379843 (-)
G8735 NA non-coding downstream 220877 13378572 ~ 13378893 (-)
G9022 NA non-coding upstream 81173 13703679 ~ 13703942 (-)
G9024 NA non-coding upstream 90020 13712526 ~ 13712776 (-)
G9025 NA non-coding upstream 90704 13713210 ~ 13713530 (-)
G9053 NA non-coding upstream 165500 13788006 ~ 13795598 (-)
G9062 NA non-coding upstream 192148 13814654 ~ 13819977 (-)
G8699 NA other downstream 288341 13272585 ~ 13311429 (-)
G8125 NA other downstream 2558861 11040269 ~ 11040909 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other downstream 2772175 10824324 ~ 10825464 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 3185257 10407395 ~ 10409950 (-)
G3931 NA other downstream 7196245 6157013 ~ 6403525 (-)
G9036 NA other upstream 104294 13726800 ~ 13727090 (-)
G9602 NA other upstream 718496 14341002 ~ 14346534 (-)
CI01000000_14200000_14436182 TENM2 other upstream 762851 14200000 ~ 14436253 (-)
G10672 NA other upstream 2603781 16226287 ~ 16231126 (-)
CI01000000_16354158_16360016 NA other upstream 2740002 16353959 ~ 16360213 (-)

Expression


Co-expression Network