LOC122352752


Basic Information

Item Value
gene id LOC122352752
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9307968 ~ 9310228 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251924.1
CGCTTTTTCTTAAAATAGTAGCTTGAGTGTAATTTATCTACTTGTAATTATGTGTAGCTTGTATCCTGAGAGGCTCCGATTTCAAAGTATGTTCCTTAACACAGAGTATGAGTCTATAAATTAATCTACTGTGAATCATGACCTAGTTCTCTTTCTTCGGAGCTCGCATCTAAACAGCAAAGGGGACATAAGGAGTCACTTCCTGTCATGCCACACTTAAATGGAAAGTTCCACAGACGGAGAGGTGGTgacctttctttctctctcagggtGCTTCAGGGGCTATCGGATGTCTTGGATCTCAGAAACGTGGGAGCAGATGAATCAGTGTAACCCAAGCACACGCTGTTCCTGAGGGTCTGCTGTCCAGTTGGACCTCATTCAGATATCCCAGCATTCCCTGAGTGAGCTGGTCTAAACTGCTCTACTGGTGTGACCTCAGACATGTTGAAAGATCTGCCTCTATGCCATGCTGCAGGAATGCTGAAAGACCGCAAATGCTTTAAAGgaGAAAAAAATCCTGATGAGAGACACACGACCAAAAcatagtttataaataaatacatttaaaaaaaatttgcagtTAGTGTGCGGAatccgtttttgtttttttatggatttcaggagaaacatctgagacaaaattcataattaaatatgacacaaattgtgatgtttttttatattgaataaaattacaactaaaagactttcaaatcacatgagccaatattaTATTCACAACAGAACATAGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251924.1 True 758 lncRNA 0.39 3 9307968 9310228

Neighbor

gene id symbol gene type direction distance location
hephl1b LOC107720546,LOC107685013,LOC107556850 coding downstream 19353 9277702 ~ 9288615 (-)
slc43a2b slc43a2b,LOC107684998,LOC107556870,LOC107720664,LOC107701113 coding downstream 30407 9266814 ~ 9277561 (-)
pitpnab pitpnab,LOC107556875,LOC107684996,LOC107720580,LOC107701111,LOC107592159,LOC108410689,LOC103045464,LOC108237022 coding downstream 41978 9245950 ~ 9265990 (-)
inpp5kb LOC107556871,LOC107720665,LOC107718714,LOC107592158,LOC107701109 coding downstream 63306 9235910 ~ 9244662 (-)
LOC122352888 pcyox1,LOC107562568,LOC107686458,LOC107713365,LOC107569400,LOC107688072,LOC106564891 coding downstream 728215 8574262 ~ 8579753 (-)
stoml3b stoml3b,LOC107556874,LOC107685018,LOC107720596,LOC107701117,LOC103043838,LOC108444492,LOC108277281 coding upstream 85252 9395480 ~ 9399654 (-)
proser1 LOC107720660,LOC107718719,LOC107685002,LOC107701116 coding upstream 90112 9400340 ~ 9407799 (-)
fgl1b si:ch211-287a12.9,LOC107556872,LOC107720659,LOC107685008 coding upstream 112717 9422945 ~ 9425337 (-)
smpd1 smpd1,LOC107720657,LOC107556869,LOC107718723,LOC107701086 coding upstream 121014 9431242 ~ 9436612 (-)
ilk ilk,LOC107720653,LOC107718724 coding upstream 127638 9437866 ~ 9453059 (-)
G75970 NA non-coding downstream 177648 9129886 ~ 9130320 (-)
LOC122352914 NA non-coding downstream 420610 8887004 ~ 8887358 (-)
G75871 NA non-coding downstream 1047701 8230688 ~ 8260267 (-)
G75868 NA non-coding downstream 1086103 8214662 ~ 8221865 (-)
G75767 NA non-coding downstream 1142260 8165448 ~ 8165708 (-)
G76042 NA non-coding upstream 12371 9322599 ~ 9325478 (-)
G76112 NA non-coding upstream 260203 9570431 ~ 9572283 (-)
G76213 LOC107557212,LOC107693892,LOC107718792 non-coding upstream 350463 9660691 ~ 9663782 (-)
LOC122352922 NA non-coding upstream 385610 9695838 ~ 9697388 (-)
G76225 LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 non-coding upstream 391764 9701992 ~ 9710708 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other downstream 275479 8002361 ~ 9032489 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other downstream 751880 8543097 ~ 8556088 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other downstream 780521 8519666 ~ 8527447 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other downstream 911569 8318889 ~ 8396399 (-)
G75863 NA other downstream 1022050 8173349 ~ 8285918 (-)
G76068 NA other upstream 117734 9427962 ~ 9429800 (-)
cd209 NA other upstream 179102 9489330 ~ 9510430 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other upstream 262144 9572372 ~ 9625405 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other upstream 957126 10267354 ~ 10283665 (-)
G76438 NA other upstream 1069868 10380096 ~ 10383309 (-)

Expression


Co-expression Network