LOC122352841


Basic Information

Item Value
gene id LOC122352841
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13548254 ~ 13556657 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251928.1
cagattaaatgaaaaataagagaaaacagTGAACACCTTCCACGTTTATGGCGCATGGTGCAGAGCACTGATAACGTACGTCTAATGCTGACAAACAAAACGACCAGAATACAGCGTCGCTAAAGCCTCAAAATCAAACCTGTCATGGCGATGACACTGTTGATCTCTGTGAGGAGATGCTACAGATCTCCATGTTGGTGAAGGAGCTCCCGGCCTCGCTGCCGCATTCTGGGTACGAAGAGCTGGAGGAAATGATGTTCTTCAGCCTGTGGAGAGCAATGATCAGCAGGGCAACCTGCGTATCGGTGGGCTTGTGAGCTGGTGCGGGTTGTTGATAGGCCACCGACGGTCCATTAGGACTTTGGGGTGGTCACATCGGCTCAGTGGTGCACACAGAAGAACAAATTAACTCATACAAGTTTTGAAgtacgaggGTGAAATAGAAAAAGGTGCCGAAAGAAGGTTGCTAAGataataaaaagAGAGTCTGGAGCGGACTGGCATATGGATGGAGCTTGGGATGCAAGCGCTGGGGCAGAGCTATGCATGTCAATAGGACCGAGGCGCCATGCCTCCTGGGAAGGTCTTATCTCTTCTGCTCTGTGCACTGAAGACACGGAACACAAGCTTATGGATCAACTCAAAGCAAAACATGACTGTCTCTTCTGTTATTTTGTATCATGGGAATTTTGTTTCAGTATTAATGAAAGCTAGCTAGCATTCTTACTCATTGATCACCAGTGATTTATCTTGGAGCAGTAGAATACTCTCTGTTcctcttaaaggtacagttcactAAAcatgaaattctgtcatcatttattcacccttgagtcatttcaaaactgtttttgtctATGCAGGTCAGTAAGGTCCAATACAAGGTGTGTAACAATAAGGTACATAAAAAACTGTGcaatttactgttaaaaaaacaagctaTGGTTACCAGACTTATTTCCATAAAGATATGCTGGaaactattttgttttacattttaagcttAAGTTTTAAGTATATTCAAAGGGTGCATTGtctttgttataaaaatattttccattgtttcaaacctttttgttttgtgttccacagaagaaagaaattcatatgaaatgagggtgagtaaataatgaccgaacatttttggctgaactaccTCTTTAACATTCATCTGAGTATTCACTCTCTTCATAACATGTGCAAGGACAGGAGAGGGCAATTTCTGCCTCTAGACGTATATTGGCGGCGTTCCACTGTCAGCTCAGTTGCCCACTGGGGACCATTGGTACCCTTCCTGAGTCCTGCTGTGTCTGATCCTGTCCTTTGGGTCTTTATAATTGCACCAGCTAATGCCGGCGCTGAGGCACATGAGTAAATGCTGTTGGATTTTGATAAGAACAGTGCCTTGGCTGATTTTTCCTCTAATCCGTGGAAACTGTAAAAATCAGAGAAGGTTTCTTATTCCCTTGATGCAAGCGATTCAACCAGCTTTGGTGCATCTATTCCCTGCACTCAAGTAGGTCGAATGTTAACGCATGGCATTCGGAGGCAAGGCCGTCTGAAGCATTTTTCATTAGACTGTGAGCTAACTTGAGGGGGAATGGGTCGCATTGATAATGAATCATCCGCTCACCCTGAGTCTGCTCTACTGATTTTGACAAGAATGTCATGTTTGAAGAAGCTTTGTGGCAGACAACAGCAATGTGTCACTCAGGATTATCCTGTGGAATTCTCTAGGCACTATGGGAAGGTTTACACAGTGAAGCATGTCAGAGTCGGAGAGCACActcttctctctttctatttcccgttttccattttatttcccTGCTGAAATGATGCTCTTTGCATAGCAATCCAAATCTCAGAGGTCTCTGTATTTCTCTGACAGCTCAGACAGAGTCACCTTCTAGTGGTCTAGCAGCTGCCAGCATATCAGGCACACTTGTACATTTATAGACACTGatatggattttaaataaaagaaacacaaaaaatgtacaaaacatttcatagataaatgtgtatttaataatttggcTTACATTTCTGGATAAAGGGATGGATATGAAACAAGGCTAActgtcattatatttatttttattttaaaaccttttaaaagtttaatgcAGGCATGCACATGAATCATGTACTTGTAtaagttttgagttcatttaattaaaaagtctaaaaagttgtttttcttaGAGAAGTTGTAGGCTTCGAACTTgaaaacttaataataaaaagttaatgtaATGGTCATTTAAATTGCATGTTAAAGAACTTACATATCGTGCCAAAATAGCAAgacatatatttgatattatttatcaatcatttaatttaaaactttaatttttgtCAGTAAAAAGGCCTTTTTCTCAGAGAAAGTATGAAAATACCAAGAAAGATTCTAATTTAAATAGataaattgtttcatttaattggaTTAAATATAAAGTGCCCTTCACAATTATTGGCATCCTTGCTTAAGGTCGTGGActtctaaaaacaaaatcatgtgTCCcgcaattattggcacccctaacAAGCTCACTGTCACAGAATGCATCCAAGGGTGGCATCTTGGGGTCTCCATAACAACCATCAGACGCTCTCTACATGCCAACAAGCTGTTTGGGAGGCATGCAAAGAAAAAGCCTGGAGTTTGCTAAGTGGTACTGGGACTTTAACTGGGAACCTGGGAACCTTGTTAGGGGACATGGCATTATAAACGC
>XR_006251929.1
cagattaaatgaaaaataagagaaaacagTGAACACCTTCCACGTTTATGGCGCATGGTGCAGAGCACTGATAACGTACGTCTAATGCTGACAAACAAAACGACCAGAATACAGCGTCGCTAAAGCCTCAAAATCAAACCTGTCATGGCGATGACACTGTTGATCTCTGTGAGGAGATGCTACAGATCTCCATGTTGGTGAAGGAGCTCCCGGCCTCGCTGCCGCATTCTGGGTACGAAGAGCTGGAGGAAATGATGTTCTTCAGCCTGTGGAGAGCAATGATCAGCAGGGCAACCTGCGTATCGGTGGGCTTGTGAGCTGGTGCGGGTTGTTGATAGGCCACCGACGGTCCATTAGGACTTTGGGGTGGTCACATCGGCTCAGTGGTGCACACAGAAGGTGAAATAGAAAAAGGTGCCGAAAGAAGGTTGCTAAGataataaaaagAGAGTCTGGAGCGGACTGGCATATGGATGGAGCTTGGGATGCAAGCGCTGGGGCAGAGCTATGCATGTCAATAGGACCGAGGCGCCATGCCTCCTGGGAAGGTCTTATCTCTTCTGCTCTGTGCACTGAAGACACGGAACACAAGCTTATGGATCAACTCAAAGCAAAACATGACTGTCTCTTCTGTTATTTTGTATCATGGGAATTTTGTTTCAGTATTAATGAAAGCTAGCTAGCATTCTTACTCATTGATCACCAGTGATTTATCTTGGAGCAGTAGAATACTCTCTGTTcctcttaaaggtacagttcactAAAcatgaaattctgtcatcatttattcacccttgagtcatttcaaaactgtttttgtctATGCAGGTCAGTAAGGTCCAATACAAGGTGTGTAACAATAAGGTACATAAAAAACTGTGcaatttactgttaaaaaaacaagctaTGGTTACCAGACTTATTTCCATAAAGATATGCTGGaaactattttgttttacattttaagcttAAGTTTTAAGTATATTCAAAGGGTGCATTGtctttgttataaaaatattttccattgtttcaaacctttttgttttgtgttccacagaagaaagaaattcatatgaaatgagggtgagtaaataatgaccgaacatttttggctgaactaccTCTTTAACATTCATCTGAGTATTCACTCTCTTCATAACATGTGCAAGGACAGGAGAGGGCAATTTCTGCCTCTAGACGTATATTGGCGGCGTTCCACTGTCAGCTCAGTTGCCCACTGGGGACCATTGGTACCCTTCCTGAGTCCTGCTGTGTCTGATCCTGTCCTTTGGGTCTTTATAATTGCACCAGCTAATGCCGGCGCTGAGGCACATGAGTAAATGCTGTTGGATTTTGATAAGAACAGTGCCTTGGCTGATTTTTCCTCTAATCCGTGGAAACTGTAAAAATCAGAGAAGGTTTCTTATTCCCTTGATGCAAGCGATTCAACCAGCTTTGGTGCATCTATTCCCTGCACTCAAGTAGGTCGAATGTTAACGCATGGCATTCGGAGGCAAGGCCGTCTGAAGCATTTTTCATTAGACTGTGAGCTAACTTGAGGGGGAATGGGTCGCATTGATAATGAATCATCCGCTCACCCTGAGTCTGCTCTACTGATTTTGACAAGAATGTCATGTTTGAAGAAGCTTTGTGGCAGACAACAGCAATGTGTCACTCAGGATTATCCTGTGGAATTCTCTAGGCACTATGGGAAGGTTTACACAGTGAAGCATGTCAGAGTCGGAGAGCACActcttctctctttctatttcccgttttccattttatttcccTGCTGAAATGATGCTCTTTGCATAGCAATCCAAATCTCAGAGGTCTCTGTATTTCTCTGACAGCTCAGACAGAGTCACCTTCTAGTGGTCTAGCAGCTGCCAGCATATCAGGCACACTTGTACATTTATAGACACTGatatggattttaaataaaagaaacacaaaaaatgtacaaaacatttcatagataaatgtgtatttaataatttggcTTACATTTCTGGATAAAGGGATGGATATGAAACAAGGCTAActgtcattatatttatttttattttaaaaccttttaaaagtttaatgcAGGCATGCACATGAATCATGTACTTGTAtaagttttgagttcatttaattaaaaagtctaaaaagttgtttttcttaGAGAAGTTGTAGGCTTCGAACTTgaaaacttaataataaaaagttaatgtaATGGTCATTTAAATTGCATGTTAAAGAACTTACATATCGTGCCAAAATAGCAAgacatatatttgatattatttatcaatcatttaatttaaaactttaatttttgtCAGTAAAAAGGCCTTTTTCTCAGAGAAAGTATGAAAATACCAAGAAAGATTCTAATTTAAATAGataaattgtttcatttaattggaTTAAATATAAAGTGCCCTTCACAATTATTGGCATCCTTGCTTAAGGTCGTGGActtctaaaaacaaaatcatgtgTCCcgcaattattggcacccctaacAAGCTCACTGTCACAGAATGCATCCAAGGGTGGCATCTTGGGGTCTCCATAACAACCATCAGACGCTCTCTACATGCCAACAAGCTGTTTGGGAGGCATGCAAAGAAAAAGCCTGGAGTTTGCTAAGTGGTACTGGGACTTTAACTGGGAACCTGGGAACCTTGTTAGGGGACATGGCATTATAAACGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251928.1 True 2741 lncRNA 0.40 6 13548254 13556657
XR_006251929.1 False 2706 lncRNA 0.40 5 13548254 13556657

Neighbor

gene id symbol gene type direction distance location
ccna1 ccna1,LOC107728895,LOC107686159 coding downstream 1931 13544044 ~ 13546323 (-)
ccdc169 LOC107686219,LOC107728839,LOC107589822 coding downstream 10286 13533751 ~ 13537968 (-)
rfc3 rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679 coding downstream 224365 13319875 ~ 13323889 (-)
zar1l zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757 coding downstream 237179 13309532 ~ 13311075 (-)
hunk hunk,LOC107686151,LOC107728887,LOC107734458,LOC107577711,LOC107691675,LOC107588971 coding downstream 362063 13178586 ~ 13186191 (-)
smad9 smad9,LOC107728873 coding upstream 1821 13558478 ~ 13565616 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding upstream 9887 13566544 ~ 13571292 (-)
supt20 supt20h,supt20,LOC107728858,LOC107589048,LOC107697409 coding upstream 17774 13574431 ~ 13588126 (-)
c10h21orf91 zgc:110006,LOC107697414,LOC107734464,LOC107686165,LOC107589110,LOC107728860 coding upstream 32652 13589309 ~ 13608152 (-)
ripk4 ripk4,LOC107589146,LOC107577855,LOC107686166 coding upstream 55487 13612144 ~ 13622868 (-)
G77284 NA non-coding downstream 59421 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 219361 13328642 ~ 13328893 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding downstream 232680 13313194 ~ 13315574 (-)
G77208 NA non-coding downstream 337308 13210616 ~ 13210946 (-)
G77153 NA non-coding downstream 445195 13021653 ~ 13103059 (-)
G77315 NA non-coding upstream 113315 13669972 ~ 13670446 (-)
G77349 NA non-coding upstream 234664 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 243356 13800013 ~ 13800912 (-)
G77351 NA non-coding upstream 247826 13804483 ~ 13804892 (-)
G77352 NA non-coding upstream 248432 13805089 ~ 13805329 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 4639 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 15190 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 759159 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 778837 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1963294 11505310 ~ 11584960 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 86527 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 249447 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 645605 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 647759 14204416 ~ 14208006 (-)
G77443 NA other upstream 677849 14234506 ~ 14264322 (-)

Expression


Co-expression Network