LOC122353141


Basic Information

Item Value
gene id LOC122353141
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16098995 ~ 16101344 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251962.1
GGACACTGCATGTCTCGGGCCAAATTGAGCAAAAGCTCATGGGAAATTGGATCCACTAGGTTGAGGAAGGCAGCGTTCTTGTACAGGATGTCGTTGAGAGATGTTCCTTCAAGACCGAGGTCCTGTCGAGAGAAAACGGATTCCCAGACATCTGGAAGCTCCTCCAAGCCCgctgtttttcatctttgaagCATAAGCACAGGGTGTTAAGAGCTTACGGGGCTGGGGTGAGTGAGGCGCCTTCATGTTTGGAAAGCCTTTCGACTGGCTGGGCATCCATGTGACAACGTGCCATTTCTAGCGACCGGATTTAAATGACTAGAATAATTTGAACAAACTAAGCATCGCCTACCAGCTGCCATGAAGGATACTTTaaatcaaatgcataaaaaaaaaataaagacgcAACTTGCTTGTGAAC

Function

GO: NA

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis
ko00030 Pentose phosphate pathway
ko00051 Fructose and mannose metabolism
ko00710 Carbon fixation in photosynthetic organisms
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251962.1 True 421 lncRNA 0.47 3 16098995 16101344

Neighbor

gene id symbol gene type direction distance location
ggt1b ggt1b,LOC107758666,LOC107689091,LOC107602052,LOC107658554 coding downstream 3639 16081970 ~ 16095356 (-)
gpat4 gpat4,LOC107746208,LOC107758670,LOC107689060,LOC107558124,LOC107658586,LOC107583403 coding downstream 69855 16021077 ~ 16029140 (-)
rab11fip1b LOC107758672,LOC107689050,LOC107746209,LOC107583401 coding downstream 89467 15994912 ~ 16009528 (-)
brf2 LOC107746211,LOC107658585,LOC107758611,LOC107558130,LOC107689884,LOC107682650 coding downstream 105023 15989593 ~ 15993972 (-)
aak1b aak1b,LOC107583399,LOC107746214,LOC107658583,LOC107689018 coding downstream 140550 15931955 ~ 15958445 (-)
LOC122352490 kdm2b,LOC107602054,LOC107689109,LOC107746202,LOC107558119,LOC107658591 coding upstream 45092 16146436 ~ 16169814 (-)
rhof rhof,LOC107689190,LOC107758662,LOC107577248,LOC107658595,LOC107558117,LOC107746201 coding upstream 82510 16183854 ~ 16187960 (-)
car15 car15,LOC107602060,LOC107758609,LOC107689182,LOC107558080 coding upstream 108404 16209748 ~ 16213685 (-)
dgcr2 dgcr2,LOC107689205,LOC107602057,LOC107746195,LOC107558114,LOC107658593,LOC107758577 coding upstream 115682 16217026 ~ 16227175 (-)
ess2 dgcr14,LOC107758656,LOC107746196 coding upstream 125975 16227319 ~ 16232580 (-)
G77820 NA non-coding downstream 111508 15935553 ~ 15987487 (-)
G77821 NA non-coding downstream 167344 15931346 ~ 15931651 (-)
G77831 NA non-coding downstream 170678 15928092 ~ 15928317 (-)
G77830 NA non-coding downstream 171497 15927186 ~ 15927498 (-)
G77827 NA non-coding downstream 177635 15920921 ~ 15921360 (-)
trnag-gcc_65 NA non-coding upstream 17442 16118786 ~ 16118856 (-)
trnag-gcc_66 NA non-coding upstream 17608 16118952 ~ 16119022 (-)
G77936 NA non-coding upstream 77256 16178600 ~ 16179895 (-)
LOC122352611 NA non-coding upstream 88190 16189534 ~ 16193540 (-)
G77947 LOC107689250,LOC107689777,LOC107602036,LOC107758655,LOC107602063,LOC107758576 non-coding upstream 144311 16245655 ~ 16252193 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other downstream 41688 16030527 ~ 16057307 (-)
LOC122352931 LOC107758671,LOC107689893 other downstream 77221 16016671 ~ 16021774 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 201763 15892644 ~ 15897232 (-)
G77702 NA other downstream 740763 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 809323 15229969 ~ 15289672 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 71134 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 314564 16415908 ~ 16490354 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other upstream 331183 16432527 ~ 16437594 (-)

Expression


Co-expression Network