trnal-uag_2


Basic Information

Item Value
gene id trnal-uag_2
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7862285 ~ 7862366 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1472
ggtagcgtggccgagcggtctaaggcgctggatttaggctccagtctctctggaggcgtgggttcgaatcccaccgctgcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1472 True 82 tRNA 0.63 1 7862285 7862366

Neighbor

gene id symbol gene type direction distance location
per1a per1a,LOC107678008,LOC107742351,LOC107676011,LOC107586160,LOC107720685 coding downstream 13098 7833109 ~ 7849187 (-)
pcolcea pcolcea,LOC107720687,LOC107554310,LOC107678009,LOC107586222,LOC107676034 coding downstream 32701 7823409 ~ 7829584 (-)
zgc:172339 zgc:172339,LOC107720553,LOC107586200,LOC107742407,LOC107676025,LOC107554295,LOC107677954 coding downstream 167369 7692846 ~ 7694916 (-)
LOC122353013 LOC107677955,LOC107554294,LOC100002544,LOC106563379 coding downstream 172790 7688141 ~ 7689495 (-)
trnal-uag_1 NA coding downstream 177562 7684642 ~ 7684723 (-)
and3 LOC107742405,LOC107676004,LOC107586202 coding upstream 244 7862610 ~ 7865286 (-)
si:ch1073-143l10.2 LOC107720678,LOC107742346,LOC107742345,LOC107554315,LOC107586164 coding upstream 17842 7880208 ~ 7881971 (-)
LOC122352606 LOC107702789,LOC107554304,LOC107720581,LOC107586167,LOC107675994,LOC101883815,LOC108424542 coding upstream 26840 7889206 ~ 7895138 (-)
LOC122352481 LOC107720603,LOC107554305,LOC107702788,LOC100538037,LOC107742403 coding upstream 33729 7896095 ~ 7897870 (-)
im:7136398 LOC107720586,LOC107554322,LOC107702786,LOC107742402,LOC107675995,LOC107586224 coding upstream 37648 7900014 ~ 7904543 (-)
G75667 NA non-coding downstream 98432 7761525 ~ 7763853 (-)
G75666 NA non-coding downstream 101187 7760833 ~ 7761098 (-)
G75654 NA non-coding downstream 174312 7687694 ~ 7687973 (-)
G75633 NA non-coding downstream 246101 7609140 ~ 7616184 (-)
G75549 NA non-coding downstream 373718 7487473 ~ 7488567 (-)
G75749 NA non-coding upstream 234940 8097306 ~ 8099806 (-)
G75767 NA non-coding upstream 303082 8165448 ~ 8165708 (-)
G75868 NA non-coding upstream 352296 8214662 ~ 8221865 (-)
G75871 NA non-coding upstream 368322 8230688 ~ 8260267 (-)
LOC122352914 NA non-coding upstream 1024638 8887004 ~ 8887358 (-)
trnal-aag_32 NA other downstream 1982 7860222 ~ 7860303 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 2571 7851021 ~ 7859714 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other downstream 318195 7530861 ~ 7544090 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other downstream 333727 7524194 ~ 7528558 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 681464 7177324 ~ 7180821 (-)
rnasekb rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166 other upstream 20976 7883342 ~ 7885482 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other upstream 139995 8002361 ~ 9032489 (-)
G75863 NA other upstream 310983 8173349 ~ 8285918 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other upstream 456523 8318889 ~ 8396399 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other upstream 657300 8519666 ~ 8527447 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnal-uag-55 NA coding NC_048593.1 CM023247.2 28592002 ~ 28592083 (-)
eurasian perch (Perca fluviatilis) trnal-uag_20 NA coding NC_053133.1 CM020930.1 12243049 ~ 12243130 (+)
striped catfish (Pangasianodon hypophthalmus) trnal-uag_3 NA coding NC_047606.1 CM018552.1 8475259 ~ 8475340 (-)
striped catfish (Pangasianodon hypophthalmus) trnal-uag_7 NA coding NC_047611.1 CM018557.1 1094851 ~ 1094932 (+)
tiger barb (Puntius tetrazona) trnam-cau_84 NA misc NC_056707.1 CM032076.1 5439220 ~ 5439291 (+)
mexican tetra (Astyanax mexicanus) trnal-uag_3 NA coding NC_035916.1 CM008319.1 14927328 ~ 14927409 (+)
mexican tetra (Astyanax mexicanus) trnal-uag_7 NA coding NW_019172914.1 APWO02000140.1 927373 ~ 927454 (+)