G78081 (LOC107747831,LOC107561793,LOC107684010)


Basic Information

Item Value
gene id G78081
gene name LOC107747831,LOC107561793,LOC107684010
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 405735 ~ 408404 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115523
TTTAGATTCACTATTTAACAGAAAGCCCTCGTTTTAATTAGGAAAAAGAGCTAAGACCGTAGTAAAAGTGTACTTGACTGTACTCTTTAAAGACACCTTGAACGTCGTTAAGGACATCATACAGCCAGaatgataataattacagtagaTCTGAAATGTTTGTAATATTCCTGGAAGAACAGTGAAATAAAGTGTGTTTGACCGCTGGCCTGAAAGAACACAGGATGTAGAAACCGTTTactcaaaacaacatttttattcaacataCACTGATTTATCAAGTAATAACCCACACTTCATCAGAGATGTTCAAGAAAAGACtgaccctggaccataaaaccagtCAAATCTAGATTAAAACATCACCTgagagctgaataaataaaggtttgttAGGATCAGACGAGATTggtctgagatacaactatctgaaaaataagaaaaaaaatattgagaaaaacacctttaaagttgttcagaTGAAGGTCTTAGGAATGCTCATCACTAATCAGAAATCAActtgatatatttatgataggaataaataaaaaaacaaaacaaaacaaaatctttgcttaatatcctaatgatttttggcacaaaGGTAATCCCTAATGCTGCCCTGTAGAGTATAGTGGAGTACTTCTCCAGACACAGCTGTATCTTGATTCTGGTCCTTCGGTTCTTTCTGGGTTCTCGTCAGTCTAGTGAACAGACTCAGGGTTACAGAGTTtacaaaaccaaaccaaaaatatctaaactcaTATTTAGTTCACAGCGATTGATTCTAAAcgtatatatattgcatattatctatgtttatattcatttaaaataaaagcttaataaGTACTATTAAACTAAGCTGGCTTTTGTAACGGATCGAGATCATCTCTAAAGATCAGATGATTTTATCTTAATGTTTACGGTGTAGAGTTTTCTCATTCAGAGTAAGAGAAGCTGGGGGAGTGGCTTTTATTGCATCAGAGATGCGTCACTTTCCTTGAAGCTGATTGGTCAAATTTCAGCTTGAGATCTCTAAACCAGAACTTAACCGGCGCTGGTTAGAGTGGAGTGTAAGTTACTACGGCGACGAACACTGGCTTTCAGGTACCATGGAACTGGTTTGGTCTCGAGTTGGGGAACTAAACTGAAACTTATTTGGCTAGCCAGCTAAACTGGCTTCATGGTACAGGCCCCTGGAGTCTgaagggacacacacacacacacacacacacacacactgctcctCAGCTGTTCTTCACGTTGCAGCAGATTCTGGGCCTCTTCAGCTCGTCTCGGTCAGATATCTAATGGATCTCAGGTGAGTTCTTGAGCTGGATTCTGGAGAGGACGTCCCATCATCCTCCTGGCCCTCAGCGACGGTCTCTGACCCAGTCACTCGGACGTCTCTTCAGCGCTCGATGAAGCGCAGGTTGATCGGTCTCTCAGGCACCAGAAGAGTCCTGGTCATGGGCCGGACCGGCTCGCTCTCCTCCGCCGGCTCCACGtcaaagtgcattaaaatcTGggccaggGCCAGGTGGACCTCCAGCTCAGCGATGCGCCGGCCGACACAGCTGCGCTTGCCCACTCCGAAGGGCAGGGAGGCGAACGGGTGACCAGCGTCTGGCCGACTCAGCCAGCGGCGCGGCACGAACTCGTCCGGGTCACAGAACTGACGCGGGTCACGGGACGTGGCGTAGTGACACAGAGTGATCAGAGTCTGACAGgagcaaacacacactggaCTCATATTCATCATATAAACAACTTTATGAAAAGGGCTTCTCTTAAAAGCTAAACAGAGTATCTGAGAGATCACTGAACCCCAG

Function

NR:

description
PREDICTED: 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115523 True 1835 lncRNA 0.43 3 405735 408404

Neighbor

gene id symbol gene type direction distance location
si:ch211-159e12.5 NA coding upstream 2327 397191 ~ 403408 (+)
LOC122354142 zgc:172352,LOC107701181,LOC107575329,LOC107747702,LOC107684012 coding upstream 40566 351955 ~ 365169 (+)
LOC122353958 sarnp,LOC107683632,LOC107696044 coding upstream 124173 280680 ~ 281562 (+)
LOC122353953 LOC107569407,LOC107688685,LOC107569398,LOC107688486 coding upstream 212878 190906 ~ 192857 (+)
LOC122354020 iars,LOC107697556 coding upstream 289234 69645 ~ 116501 (+)
slc11a2 slc11a2,LOC107669929,LOC107561796,LOC107747835,LOC107677945 coding downstream 17076 425480 ~ 438326 (+)
npffl npffl,LOC107747841,LOC107669931,LOC107738884,LOC107677943 coding downstream 31816 440220 ~ 442079 (+)
alas1 alas1 coding downstream 34549 442953 ~ 448514 (+)
LOC122354000 NA coding downstream 45158 453562 ~ 456072 (+)
poc1a poc1a,LOC108424582,LOC107747840 coding downstream 48548 456952 ~ 493701 (+)
G78047 NA non-coding upstream 262 402445 ~ 405473 (+)
LOC122353670 NA non-coding upstream 765 403452 ~ 404970 (+)
LOC122354311 NA non-coding upstream 32096 367803 ~ 373639 (+)
G78063 NA non-coding upstream 38563 247354 ~ 367172 (+)
G78061 NA non-coding upstream 54791 350619 ~ 350944 (+)
G78089 NA non-coding downstream 15982 424386 ~ 425078 (+)
LOC122353680 NA non-coding downstream 662670 1071074 ~ 1074580 (+)
G78370 NA non-coding downstream 786820 1195224 ~ 1195463 (+)
G78380 NA non-coding downstream 808820 1217224 ~ 1222835 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 868111 1276515 ~ 1277127 (+)
LOC122354326 LOC107747702,LOC107684012,LOC107574232,LOC107701181,LOC107737133 other upstream 55293 348517 ~ 350442 (+)
G78055 LOC107569407,LOC107569398,LOC107688685,LOC107571108 other upstream 71339 333069 ~ 334396 (+)
LOC122353551 NA other upstream 340587 63006 ~ 65148 (+)
G78083 NA other downstream 929 409333 ~ 410684 (+)
G78084 NA other downstream 3635 412039 ~ 412753 (+)
iars1 iars,LOC107697556 other downstream 178011 586415 ~ 599371 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other downstream 194734 603138 ~ 709490 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other downstream 439771 848175 ~ 913799 (+)

Expression


Co-expression Network