tsen2 (tsen2)


Basic Information

Item Value
gene id tsen2
gene name tsen2
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1034409 ~ 1040239 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115811
GCTGCGACACCGCGACTCGTGCGTTCCTGCTGGAATAAACGCTAGAAACTCGGACAAAAGAAAACAGTAGTTGAAAACAACGCGGGGCATGTCGTGTTTGGGATCGGCCTGAGCTGTGCTCCATGACAGAAGCCGTGTTTCAGGCGCCTAAACGGCGGACGAAGGTGCACGAGCGGTTTGAAGCTCCGCTGCCGGTGTCTCTGGATGAAGGGCACGTCGTCTTCAGAGCAGAAATCCTCGCGCATCATGTCATAGTCACAGATCCTGCTCACATACTGCTTCTCTATCAGAGGGGCTTCTTCGGTAAAGGAGTGTTCTCCAGGTCCAGACCCGAGCACGTGATCTCTCCCCGGTGGAAGTGTAGGCGTCCTTTGCTTTCTAACGTTTAATGAACATCTTCTGAGTGGTTATGGATCTGACTCTTTTGTTTCAGACGCTGGAGACAGATGTGTGCCTGTCATCTCCTCAAAAGaGTACCAGAAGCGTCTCGGCTGGGCGCGAGCGGCTCTTCAGACGCAGGGCCTGGAGGACGAGTCCGTCGCCCGAGCCTTAGAGACGCTCGCTAAACCAGTGGAGCTGAGCTCTGAGGGCCGGGCGCCTGAGCAGAGCGGGGCCGGCTCTGATCCTGGAGAAGAGGAGGTGAGGACACCCGAGGAAGACGCTTCTCACTATGTCCTGGTGGAGCTCTCTGAAGACGAGtgcTCTACCGGAAAGGACCGCCGTTTTATCATGCAAGttacTCGGTGGTGGTGGACCGGTGTGACGAGTCTCTGCGGCCCTTCAGCTGGAAATCCCTGGCTGCTCTCTGCAGAATCACCGGAAACGTCTCGAAGGAGCTGATGCTGTGTTCGGTCCTCACTCCGTCAGACGTGACCGAGGACCTGCTGTCGTCTCCGGAGTGTCTGAAGCGTTTCTCCGTGCAGGAGGTCATCGTGAGCAGATGGGTCTCCTCGAGAGAACGAACCGAGCAGGAGGAAATCTAACATTCCTTTTCcatgtttattttgcttcacaagattgagctgctatttatttttccttgctAATGTTCGAAGAGTGCACGCAAAGAGCCAAAGAGTGTTCAGtaataaagacacacacacgaGAGAAGAGCGGTGTTGTGTTTTCTCACGAACCGTCGAGTCATTGTGAAGAAAACGGGGCTAAATCATATTCTGCATTTTTATGGAAACAGGGTTTCTT
>XM_043251268.1
TATATGGCGGTTTAATTTGGTTATTTGGCATTATTTACATCGTTTATATGAAGTTTCAAGCAAAAGATTCGCAGACGGAACTATTAATGGTGTTTCCCGAAGCGCCGCGGACGACCTTTGCTGCGACACCGCGACTCGTGCGTTCCTGCTGGAATAAACGCTAGAAACTCGGACAAAAGAAAACAGTAGTTGAAAACAACGCGGGGCATGTCGTGTTTGGGATCGGCCTGAGCTGTGCTCCATGACAGAAGCCGTGTTTCAGGCGCCTAAACGGCGGACGAAGGTGCACGAGCGGTTTGAAGCTCCGCTGCCGGTGTCTCTGGATGAAGGGCACGTCGTCTTCAGAGCAGAAATCCTCGCGCATCATGTCATAGTCACAGATCCTGCTCACATACTGCTTCTCTATCAGAGGGGCTTCTTCGGTAAAGGAGTGTTCTCCAGGTCCAGACCCGAGCACGTGATCTCTCCCCGGTGGAAGTACGCTGGAGACAGATGTGTGCCTGTCATCTCCTCAAAAGaGTACCAGAAGCGTCTCGGCTGGGCGCGAGCGGCTCTTCAGACGCAGGGCCTGGAGGACGAGTCCGTCGCCCGAGCCTTAGAGACGCTCGCTAAACCAGTGGAGCTGAGCTCTGAGGGCCGGGCGCCTGAGCAGAGCGGGGCCGGCTCTGATCCTGGAGAAGAGGAGGTGAGGACACCCGAGGAAGACGCTTCTCACTATGTCCTGGTGGAGCTCTCTGAAGACGAGGAGCGGAGCAGGTCGGAGCTCAGAATAAACCCTTTCACCCTGATGGAGTATCTGCAGCTGAGTTATGAAGAAGCCTTCTTTCTGGTGTACGCTCTCGGCTGTTTGTCGGTGTGTTACGGCGGGGAAGCCCTGTCGGTCACGCAGGTTTGGACCATGTTTCGCTCGCTGCAGCCCAACTTCTCCAGCTCCTACGCGGCCTATCACTACTTCCGCAGTAAAGGCTGGGTGCCCAAGTCTGGCATTAAATACGGAACGGACTTGAtgcTCTACCGGAAAGGACCGCCGTTTTATCATGCAAGttacTCGGTGGTGGTGGACCGGTGTGACGAGTCTCTGCGGCCCTTCAGCTGGAAATCCCTGGCTGCTCTCTGCAGAATCACCGGAAACGTCTCGAAGGAGCTGATGCTGTGTTCGGTCCTCACTCCGTCAGACGTGACCGAGGACCTGCTGTCGTCTCCGGAGTGTCTGAAGCGTTTCTCCGTGCAGGAGGTCATCGTGAGCAGATGGGTCTCCTCGAGAGAACGAACCGAGCAGGAGGAAATCTAACATTCCTTTTCcatgtttattttgcttcacaagattgagctgctatttatttttccttgctAATGTTCGAAGAGTGCACGCAAAGAGCCAAAGAGTGTTCAGtaataaagacacacacacgaGAGAAGAGCGGTGTTGTGTTTTCTCACGAACCGTCGAGTCATTGTGAAGAAAACGGGGCTAAATCATATTCTGCATTTTTATGGAAACAGGGTTTCTTAATAAAACGGGCTTGACTTTCTAACACTA
>XM_043251269.1
ACTGTATATGGCGGTTTAATTTGGTTATTTGGCATTATTTACATCGTTTATATGAAGTTTCAAGCAAAAGATTCGCAGACGGAACTATTAATGGTGTTTCCCGAAGCGCCGCGGACGACCTTTGCTGCGACACCGCGACTCGTGCGTTCCTGCTGGAATAAACGCTAGAAACTCGGACAAAAGAAAACAGTAGTTGAAAACAACGCGGGGCATGTCGTGTTTGGGATCGGCCTGAGCTGTGCTCCATGACAGAAGCCGTGTTTCAGGCGCCTAAACGGCGGACGAAGGTGCACGAGCGGTTTGAAGCTCCGCTGCCGGTGTCTCTGGATGAAGGGCACGTCGTCTTCAGAGCAGAAATCCTCGCGCATCATGTCATAGTCACAGATCCTGCTCACATACTGCTTCTCTATCAGAGGGGCTTCTTCGGTAAAGGAGTGTTCTCCAGGTCCAGACCCGAGCACGTGATCTCTCCCCGGTGGAAGTACGCTGGAGACAGATGTGTGCCTGTCATCTCCTCAAAAGaGTACCAGAAGCGTCTCGGCTGGGCGCGAGCGGCTCTTCAGACGCAGGGCCTGGAGGACGAGTCCGTCGCCCGAGCCTTAGAGACGCTCGCTAAACCAGTGGAGCTGAGCTCTGAGGGCCGGGCGCCTGAGCAGAGCGGGGCCGGCTCTGATCCTGGAGAAGAGGAGGTGAGGACACCCGAGGAAGACGCTTCTCACTATGTCCTGGTGGAGCTCTCTGAAGACGAGGAGCGGAGCAGGTCGGAGCTCAGAATAAACCCTTTCACCCTGATGGAGTATCTGCAGCTGAGTTATGAAGAAGAAGCCCTGTCGGTCACGCAGGTTTGGACCATGTTTCGCTCGCTGCAGCCCAACTTCTCCAGCTCCTACGCGGCCTATCACTACTTCCGCAGTAAAGGCTGGGTGCCCAAGTCTGGCATTAAATACGGAACGGACTTGAtgcTCTACCGGAAAGGACCGCCGTTTTATCATGCAAGttacTCGGTGGTGGTGGACCGGTGTGACGAGTCTCTGCGGCCCTTCAGCTGGAAATCCCTGGCTGCTCTCTGCAGAATCACCGGAAACGTCTCGAAGGAGCTGATGCTGTGTTCGGTCCTCACTCCGTCAGACGTGACCGAGGACCTGCTGTCGTCTCCGGAGTGTCTGAAGCGTTTCTCCGTGCAGGAGGTCATCGTGAGCAGATGGGTCTCCTCGAGAGAACGAACCGAGCAGGAGGAAATCTAACATTCCTTTTCcatgtttattttgcttcacaagattgagctgctatttatttttccttgctAATGTTCGAAGAGTGCACGCAAAGAGCCAAAGAGTGTTCAGtaataaagacacacacacgaGAGAAGA
>XM_043251270.1
TGTATATGGCGGTTTAATTTGGTTATTTGGCATTATTTACATCGTTTATATGAAGTTTCAAGCAAAAGATTCGCAGACGGAACTATTAATGGTGTTTCCCGAAGCGCCGCGGACGACCTTTGCTGCGACACCGCGACTCGTGCGTTCCTGCTGGAATAAACGCTAGAAACTCGGACAAAAGAAAACAGTAGTTGAAAACAACGCGGGGCATGTCGTGTTTGGGATCGGCCTGAGCTGTGCTCCATGACAGAAGCCGTGTTTCAGGCGCCTAAACGGCGGACGAAGGTGCACGAGCGGTTTGAAGCTCCGCTGCCGGTGTCTCTGGATGAAGGGCACGTCGTCTTCAGAGCAGAAATCCTCGCGCATCATGTCATAGTCACAGATCCTGCTCACATACTGCTTCTCTATCAGAGGGGCTTCTTCGGTAAAGGAGTGTTCTCCAGGTCCAGACCCGAGCACGTGATCTCTCCCCGGTGGAAGTACGCTGGAGACAGATGTGTGCCTGTCATCTCCTCAAAAGaGTACCAGAAGCGTCTCGGCTGGGCGCGAGCGGCTCTTCAGACGCAGGGCCTGGAGGACGAGTCCGTCGCCCGAGCCTTAGAGACGCTCGCTAAACCAGTGGAGCTGAGCTCTGAGGGCCGGGCGCCTGAGCAGAGCGGGGCCGGCTCTGATCCTGGAGAAGAGGAGGTGAGGACACCCGAGGAAGACGCTTCTCACTATGTCCTGGTGGAGCTCTCTGAAGACGAGGCCTTCTTTCTGGTGTACGCTCTCGGCTGTTTGTCGGTGTGTTACGGCGGGGAAGCCCTGTCGGTCACGCAGGTTTGGACCATGTTTCGCTCGCTGCAGCCCAACTTCTCCAGCTCCTACGCGGCCTATCACTACTTCCGCAGTAAAGGCTGGGTGCCCAAGTCTGGCATTAAATACGGAACGGACTTGAtgcTCTACCGGAAAGGACCGCCGTTTTATCATGCAAGttacTCGGTGGTGGTGGACCGGTGTGACGAGTCTCTGCGGCCCTTCAGCTGGAAATCCCTGGCTGCTCTCTGCAGAATCACCGGAAACGTCTCGAAGGAGCTGATGCTGTGTTCGGTCCTCACTCCGTCAGACGTGACCGAGGACCTGCTGTCGTCTCCGGAGTGTCTGAAGCGTTTCTCCGTGCAGGAGGTCATCGTGAGCAGATGGGTCTCCTCGAGAGAACGAACCGAGCAGGAGGAAATCTAACATTCCTTTTCcatgtttattttgcttcacaagattgagctgctatttatttttccttgctAATGTTCGAAGAGTGCACGCAAAGAGCCAAAGAGTGTTCAGtaataaagacacacacacgaGAGAAGA
>XM_043251271.1
ACTGTATATGGCGGTTTAATTTGGTTATTTGGCATTATTTACATCGTTTATATGAAGTTTCAAGCAAAAGATTCGCAGACGGAACTATTAATGGTGTTTCCCGAAGCGCCGCGGACGACCTTTGCTGCGACACCGCGACTCGTGCGTTCCTGCTGGAATAAACGCTAGAAACTCGGACAAAAGAAAACAGTAGTTGAAAACAACGCGGGGCATGTCGTGTTTGGGATCGGCCTGAGCTGTGCTCCATGACAGAAGCCGTGTTTCAGGCGCCTAAACGGCGGACGAAGGTGCACGAGCGGTTTGAAGCTCCGCTGCCGGTGTCTCTGGATGAAGGGCACGTCGTCTTCAGAGCAGAAATCCTCGCGCATCATGTCATAGTCACAGATCCTGCTCACATACTGCTTCTCTATCAGAGGGGCTTCTTCGGTAAAGGAGTGTTCTCCAGGTCCAGACCCGAGCACGTGATCTCTCCCCGGTGGAAGTACGCTGGAGACAGATGTGTGCCTGTCATCTCCTCAAAAGaGTACCAGAAGCGTCTCGGCTGGGCGCGAGCGGCTCTTCAGACGCAGGGCCTGGAGGACGAGTCCGTCGCCCGAGCCTTAGAGACGCTCGCTAAACCAGTGGAGCTGAGCTCTGAGGGCCGGGCGCCTGAGCAGAGCGGGGCCGGCTCTGATCCTGGAGAAGAGGAGGTGAGGACACCCGAGGAAGACGCTTCTCACTATGTCCTGGTGGAGCTCTCTGAAGACGAGGAAGCCCTGTCGGTCACGCAGGTTTGGACCATGTTTCGCTCGCTGCAGCCCAACTTCTCCAGCTCCTACGCGGCCTATCACTACTTCCGCAGTAAAGGCTGGGTGCCCAAGTCTGGCATTAAATACGGAACGGACTTGAtgcTCTACCGGAAAGGACCGCCGTTTTATCATGCAAGttacTCGGTGGTGGTGGACCGGTGTGACGAGTCTCTGCGGCCCTTCAGCTGGAAATCCCTGGCTGCTCTCTGCAGAATCACCGGAAACGTCTCGAAGGAGCTGATGCTGTGTTCGGTCCTCACTCCGTCAGACGTGACCGAGGACCTGCTGTCGTCTCCGGAGTGTCTGAAGCGTTTCTCCGTGCAGGAGGTCATCGTGAGCAGATGGGTCTCCTCGAGAGAACGAACCGAGCAGGAGGAAATCTAACATTCCTTTTCcatgtttattttgcttcacaagattgagctgctatttatttttccttgctAATGTTCGAAGAGTGCACGCAAAGAGCCAAAGAGTGTTCAGtaataaagacacacacacgaGAGAAGA

Function

symbol description
tsen2 Predicted to enable tRNA-intron endonuclease activity. Predicted to be involved in tRNA-type intron splice site recognition and cleavage. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Predicted to be located in nucleus. Predicted to be part of tRNA-intron endonuclease complex. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2B. Orthologous to human TSEN2 (tRNA splicing endonuclease subunit 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation biological_process
GO:0000214 tRNA-intron endonuclease complex cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000213 tRNA-intron endonuclease activity molecular_function

KEGG:

id description
K15322 TSEN2; tRNA-splicing endonuclease subunit Sen2

RNA

RNA id representative length rna type GC content exon number start site end site
TU115811 False 1203 lncRNA 0.53 7 1034532 1040210
XM_043251268.1 True 1540 mRNA 0.53 11 1034413 1040239
XM_043251269.1 False 1373 mRNA 0.54 10 1034409 1040119
XM_043251270.1 False 1350 mRNA 0.54 10 1034411 1040119
XM_043251271.1 False 1301 mRNA 0.54 9 1034409 1040119

Neighbor

gene id symbol gene type direction distance location
pparg pparg,LOC107571218,LOC107742034,LOC107667870 coding upstream 5192 1003243 ~ 1029217 (+)
syn2b syn2,syn2b,LOC107758022,LOC107742035,LOC107667867 coding upstream 32695 942791 ~ 1001714 (+)
hrh1 hrh1,LOC107697554,LOC107750035,LOC107570335,LOC107576492 coding upstream 188501 841632 ~ 845908 (+)
slc6a1b slc6a1,slc6a1b,LOC107670967,LOC107746710,LOC107697564 coding upstream 258505 767288 ~ 775904 (+)
slc6a11b slc6a11,LOC107750026,LOC107561801,LOC107697565 coding upstream 293117 721810 ~ 741292 (+)
mkrn2 mkrn2,LOC107742032,LOC107675967,LOC107571211,LOC107571213 coding downstream 6111 1046350 ~ 1053868 (+)
isy1 isy1,LOC107700632,LOC108431508,LOC108254962,LOC102298134,LOC101070566 coding downstream 37300 1077539 ~ 1083253 (+)
zgc:77375 zgc:77375,LOC107700631,LOC107758152,LOC108431553,LOC105013113 coding downstream 43732 1083971 ~ 1093073 (+)
nuf2 nuf2,LOC107570127,LOC107550318 coding downstream 58254 1098493 ~ 1105706 (+)
znf831 LOC107558955,LOC107730612,LOC107670927 coding downstream 127913 1168152 ~ 1179799 (+)
G78089 NA non-coding upstream 609331 424386 ~ 425078 (+)
G78081 LOC107747831,LOC107561793,LOC107684010 non-coding upstream 626005 405735 ~ 408404 (+)
G78047 NA non-coding upstream 628936 402445 ~ 405473 (+)
LOC122353670 NA non-coding upstream 629439 403452 ~ 404970 (+)
LOC122354311 NA non-coding upstream 660770 367803 ~ 373639 (+)
LOC122353680 NA non-coding downstream 30835 1071074 ~ 1074580 (+)
G78370 NA non-coding downstream 154985 1195224 ~ 1195463 (+)
G78380 NA non-coding downstream 176985 1217224 ~ 1222835 (+)
G78400 LOC107747473,LOC107550334,LOC107654802 non-coding downstream 236276 1276515 ~ 1277127 (+)
G78455 NA non-coding downstream 382494 1422733 ~ 1425764 (+)
atg7 atg7,vgll4,vgll4b,LOC107697561,LOC107750032,LOC107750033,LOC107697562 other upstream 120610 848175 ~ 913799 (+)
atp2b2 atp2b2,LOC107561799,LOC107570616,LOC107746712,LOC102776443,LOC107697566 other upstream 324919 603138 ~ 709490 (+)
iars1 iars,LOC107697556 other upstream 435038 586415 ~ 599371 (+)
G78084 NA other upstream 621656 412039 ~ 412753 (+)
G78083 NA other upstream 623725 409333 ~ 410684 (+)
cnbpb cnbpb,cnbp,LOC107742027,LOC107675970,LOC108431552,LOC106566283 other downstream 34468 1074707 ~ 1077399 (+)
LOC122353696 LOC107670931,LOC107551313 other downstream 146627 1186866 ~ 1191721 (+)
rbms2a rbms2,LOC107730618,LOC108424578,LOC107654803,LOC107565002,LOC107709509,LOC102312407,LOC107681488,LOC107551328 other downstream 379281 1419520 ~ 1448960 (+)
rargb LOC107730622,LOC107681487,LOC107551317,LOC107681495,LOC107754558,LOC107557540,LOC108424631,LOC105907526 other downstream 445468 1485707 ~ 1517963 (+)
G78500 NA other downstream 550505 1590744 ~ 1593125 (+)

Expression


Co-expression Network