G78331


Basic Information

Item Value
gene id G78331
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1050078 ~ 1052544 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115920
agagagagagagagagagagagagagacagagagagagagagagagagattcatcATACTGGAGCAGCATCCAGCAGCTTCTAAGATCTAAAGCGGGTGAGGAGCACTATCTGGACTAAAACAGTAACTAACTGATAATGAAAGCTTTGATTAGATATTAGATTAAGTGTGTGGTCCTAAGATGCTTTTCATCGACagaattttgtgttttttaaattgtgggTAAATGGATCGTTTGAATGGTTGATTCGTTCAGGAAGTTTTACAAACAGCTAACATTCACTCGCTGGACAAAGACAACATCAGAAACATTGACTTTTCTTGAAAGTGGAGTCATTTTAAACAAGGTTACAGAAGTTCTTCAGTTCCCCCATAACTCAGGACGTGTCTCGAGCCAAATAAACCAGTTCTAAAGACtgaagtgagtgtgtgtgtgagtgtgtgtgtgtgagtgtgagtgtgtgtgtgagtgtgtctgtgtgagtctgagtgtgagtgtgtgagtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtgtctgtgagtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtgtctgtgagtgtgtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgtgtgtgtgagtgtgtgtgtgttacccgCACGTTCCCCTCTGCGCTCATCTGTTTGCGGGGTTTGTCAGGTTCTGCTCGTGTCCCGTCGGCGTACGCATGCATGTAGAAACACTTCCCTCCAAACGGACACGTTCCTCTTCCCTGATCGAAGTACTTGCAGGGCTTCTTACTGCCAGAACAGAAACACAGTCCCATCAAGGAAGAGCCCCGGGCCGGGCGACACGATACATTTATGACGACTAATAAGAATCAGTTCATGTTTGATGGATACagcgttttatttaaatatgtgacTGAATAAATGATCTTATAgtgtttgtaatttattatttttaataataataataataaaagctctATCGAGATGAAATAATgttcaataattaataatgaatacatttcacaAGATGTGAAACAAAATTCCTCGTACTGTGAAGTAAGATTTTGGTCATATTACGATATCTAGTTTAAACCAGAAGAAATCTGTCTGCATTCGgccaataaatcaatcaataaaggGACGGCTGGATGAAAACAGCTCCCCACTGCTGGACTGAGAGCCGATCAAAGACAGATGAAAGCCTGCTTCTACGGCATTACGGGAAGACTCCAAACATTTGACCTTTAACCTCATATTCTATTCATTTCTGATTGAACAGTGCAGCTGCTCTTCAAAGTCAGACCGACCCGAGACTTTAGTGAAGAGGAACGATAAAGGAAGCTAGAACACAGAAGATAAGAAATCAGAACTGGCCAAAAATCACGGTTTTTACTTCAGACTGTAAACAgtgatttttaccttttttttactatttcacCTGGTTCTTATTATGgttaactaaaaacaaaaccaaaaaaaaaaaaagttacataaaactgatgttaaaaaagagcaataaaaagtaattataataaaacgtcAACTAAAATCTAATCAAAAAACTTTGGCTAGTGCTAAACGACTTAAGACTAAAACTaaagctaataaataaactatacacAGTTAACAAACTGAATGTTTGATattaactataaaatataaattgaaatattaacataacataaaataaaagttacatttggTTACATTAAAATTTGGTTTAACTTGAACTAAAAtagcaaaagctgaaaaaaaatacataaaattgctcaaactttacttaatatttaaatgaaaatggatgatatatattgaataaaattttttaatatattaaatatattgaaattatttatgaaaaaaaaaatagcatgtcaATGATCCTAAAACGTAACAGTTCCTTTCGGAGCCCGGTGTGTCTGTTtggtaaaatgtgtttgtgaccTGGTCACACCTGACTCCGGACTTGAACTCCTCGATGAGCCGGTTCTTCTCCTCCTGGTCCTCCACCCAGTACATGCTGGGAATCACGAACTCAGACACCACACGGCACTCGGGACAGGACCTGCACACAACCACAGGTCACTCGAGCAGGTGAGAGGTCAGGTGCGGGTCGGGGTCAGGTGCGGGTCGGGTGAGAGAGGTCGGGTTAGAGAGGTCAGG

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0022037 metencephalon development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115920 True 2197 lncRNA 0.39 3 1050078 1052544

Neighbor

gene id symbol gene type direction distance location
mkrn2os.1 NA coding downstream 4122 1044079 ~ 1045956 (-)
mkrn2os.2 LOC107758069,LOC107687314,LOC107564281 coding downstream 6659 1040367 ~ 1043419 (-)
LOC122353725 timp4,LOC107571219,LOC107667868,LOC107564284,LOC107687318,LOC107742036 coding downstream 59816 985343 ~ 990262 (-)
LOC122353727 NA coding downstream 69962 977597 ~ 980116 (-)
tamm41 tamm41 coding downstream 110806 933852 ~ 939272 (-)
raf1b raf1,raf1b,LOC107742031,LOC107675968,LOC107571214 coding upstream 2033 1054577 ~ 1070499 (-)
rab43 rab43,LOC107758163,LOC107700634,LOC107675972,LOC107742026 coding upstream 40728 1093272 ~ 1097710 (-)
trnac-gca_5 NA coding upstream 53801 1106345 ~ 1106416 (-)
trnac-gca_6 NA coding upstream 54235 1106779 ~ 1106850 (-)
trnac-gca_7 NA coding upstream 54445 1106989 ~ 1107060 (-)
G78327 mkrn2,LOC107675967,LOC107571211,LOC107571213,LOC107742032 non-coding downstream 142 1049406 ~ 1049936 (-)
G78324 pparg non-coding downstream 26268 1021476 ~ 1023810 (-)
G78298 NA non-coding downstream 142504 905807 ~ 907574 (-)
G78226 slc6a11,LOC107746711,LOC107686974,LOC107561801,LOC107697565,LOC107750026 non-coding downstream 326514 722464 ~ 723564 (-)
LOC122353904 NA non-coding downstream 328447 719275 ~ 721631 (-)
G78338 NA non-coding upstream 20002 1072546 ~ 1074456 (-)
G78339 cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855 non-coding upstream 23241 1075785 ~ 1158877 (-)
G78354 NA non-coding upstream 115778 1168322 ~ 1168814 (-)
G78373 NA non-coding upstream 151332 1203876 ~ 1204107 (-)
G78378 LOC107730614,LOC107551316,LOC107654797,LOC107722003 non-coding upstream 159732 1212276 ~ 1213265 (-)
LOC122353728 NA other downstream 75291 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 255942 599107 ~ 794136 (-)
G78170 NA other downstream 594080 453134 ~ 455998 (-)
G78144 alas1 other downstream 601177 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 644667 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 164675 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 536160 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 652080 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1760808 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1767044 2819588 ~ 2830203 (-)

Expression


Co-expression Network