G78378 (LOC107730614,LOC107551316,LOC107654797,LOC107722003)


Basic Information

Item Value
gene id G78378
gene name LOC107730614,LOC107551316,LOC107654797,LOC107722003
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1212276 ~ 1213265 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115985
GGGCAATTTATCACATGGGTGATACGCGTTGGatagctttattaaaaatgaatcaataacAGCTGTATTGTAGTATGAAATATGAACgagaaaagaagaaatctgGATGGGGGTAGTCAGATGAAATGAACCAGGCTATCTTCACACTCTCTGGGGACCGTGAGTTTGTACGTCTGGCAGGTCAGTTTATAGTTACATCCCTCATTGTTGTCCCAGTACTCGAACCCGCAGACCCTGTAGCAGATGGCAAACTGCAGCATGGCACCCGGCTGCAAGATGAACGGCGGCACAGGCAGGTGAAAACGAAACACGTCTGATTCTGGACGCGGCCCATCTCTGTGGACGGTGGAGATCCAGCACGCTTTGCTCTCCGCGCTGCTCCTCCAGTCCGTAAACGAGTACCGCACCGCGACCTCTTTCTCGTAGGCCAAGTTCAGCACTCGCACGGTTCCGATGATTCCCAGCTCAGAGCAAAACACCTGCTCCAGGCAAACTGGCTGCCGGCACAAGCGCTCGAGGAAACCAGCCTCGGCCAGCATGTTGACAGGGAAAGAGGGCTGGAAGTAGGGTAGGGAGAGCGCCAGGTTTTTCCTGGAAGCCAGCTCGGAGCTTGCCAGCAGTCTTGTGATAACGTGGACCGGCACCATTGGGTCCTCGCTGGCCTTGAAGAACTTCACATCTTCCAGCTCCAGCCCTAGCGAATCTACGAAGCGGACCTGCGCGGTCCTGCAGGCGCGCTTATCCGTGGAGGACGAGAGGGATTTAGCCCGTCTCCTCATGATGGGTTTTGGCTCTGGCTCGCACGACTGCCTCCGCCGCCGGACGACGGGCTCCTGGGGGGAAACCGGTTTAGGGCTGGGCGGCCGTATTGCCACAGGGGTCCTTTGTGGTGGTGGTTTGGGGCTGTAGATGTCTCGaagatgaaaggttttgatggGTCTAGATACTCCACCAAAACCACTTGTTAACTGCAAGCCTGGTCCGGATGCA

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 3D-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115985 True 990 lncRNA 0.55 1 1212276 1213265

Neighbor

gene id symbol gene type direction distance location
fam217bb NA coding downstream 592 1208200 ~ 1211684 (-)
pdrg1 pdrg1,LOC107730611,LOC107722004,LOC107670939,LOC107654798,LOC107580937,LOC107654789 coding downstream 5439 1205119 ~ 1206837 (-)
trnac-gca_119 NA coding downstream 47935 1164270 ~ 1164341 (-)
trnac-gca_118 NA coding downstream 48622 1163583 ~ 1163654 (-)
trnac-gca_117 NA coding downstream 48842 1163363 ~ 1163434 (-)
si:ch73-303b9.1 LOC107654802,LOC107747473,LOC107550334 coding upstream 63102 1276367 ~ 1277356 (-)
faim2b faim2b,LOC107730619,LOC107681489,LOC107565004,LOC107741574,LOC107551329 coding upstream 236344 1449609 ~ 1455138 (-)
nr1d4b nr1d4b,LOC107681485,LOC107730617,LOC107551331,LOC107654804,LOC107565003 coding upstream 246309 1459574 ~ 1471248 (-)
calcoco1b LOC107681486,LOC107551319,LOC107557538,LOC107687106,LOC107707358 coding upstream 306067 1519332 ~ 1529182 (-)
smug1 smug1,LOC107551321,LOC107707359,LOC107660781,LOC107557534,LOC107687108 coding upstream 334760 1548025 ~ 1551955 (-)
G78373 NA non-coding downstream 8169 1203876 ~ 1204107 (-)
G78354 NA non-coding downstream 43462 1168322 ~ 1168814 (-)
G78339 cnbp,cnbpb,LOC107742030,LOC107742027,LOC107675970,LOC106583855 non-coding downstream 53399 1075785 ~ 1158877 (-)
G78338 NA non-coding downstream 137820 1072546 ~ 1074456 (-)
G78331 NA non-coding downstream 159732 1050078 ~ 1052544 (-)
G78410 NA non-coding upstream 68467 1281732 ~ 1284944 (-)
G78413 NA non-coding upstream 74028 1287293 ~ 1298959 (-)
G78419 NA non-coding upstream 79696 1292961 ~ 1296158 (-)
G78440 LOC106565466,LOC107082107 non-coding upstream 176525 1389790 ~ 1391106 (-)
G78555 NA non-coding upstream 221373 1434638 ~ 1435929 (-)
LOC122353728 NA other downstream 237489 972954 ~ 974787 (-)
G78195 atp2b2,slc6a1b,slc6a1,LOC107561799,LOC107570616,LOC107670967,LOC107746710,LOC107570615,LOC107697564 other downstream 418140 599107 ~ 794136 (-)
G78170 NA other downstream 756278 453134 ~ 455998 (-)
G78144 alas1 other downstream 763375 443885 ~ 448901 (-)
LOC122353669 mettl21b,LOC107684011 other downstream 806865 402940 ~ 405411 (-)
phactr3b phactr3b,LOC107730624,LOC107670936,LOC107722000,LOC107654794,LOC107550338,LOC103365918,LOC106955159,LOC104947949 other upstream 3954 1217219 ~ 1260090 (-)
LOC122354408 LOC107683642,LOC107737350,LOC107572058 other upstream 375439 1588704 ~ 1696787 (-)
nab2 nab2,LOC107557549,LOC107730902,LOC107696037,LOC107683651,LOC107737369 other upstream 491359 1704624 ~ 1716129 (-)
LOC122354491 gata2a,gata2,LOC107680419,LOC107744843,LOC107573143 other upstream 1600087 2813352 ~ 2816128 (-)
LOC122354336 srpk2,srpk1b,LOC108428417,LOC107714507,LOC107699336 other upstream 1606323 2819588 ~ 2830203 (-)

Expression


Co-expression Network